DC-Build-Header: libmaus2 2.0.806+ds-1 / 2021-10-26 18:30:25 +0000 DC-Task: type:rebuild-binarch-only source:libmaus2 version:2.0.806+ds-1 chroot:unstable esttime: logfile:/tmp/libmaus2_2.0.806+ds-1_unstable_clang13.log modes:clang13:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --no-run-lintian --chroot-setup-commands=/tmp/clang13 libmaus2_2.0.806+ds-1' sbuild (Debian sbuild) 0.78.1 (09 February 2019) on ip-172-31-0-174.eu-central-1.compute.internal +==============================================================================+ | libmaus2 2.0.806+ds-1 (amd64) Tue, 26 Oct 2021 18:30:25 +0000 | +==============================================================================+ Package: libmaus2 Version: 2.0.806+ds-1 Source Version: 2.0.806+ds-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-ed828771-fd85-4835-b3df-c8944194983e' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang13 ------------ + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=13 + echo 'Install of clang-13' Install of clang-13 + apt-get update Get:1 http://127.0.0.1:12990/debian sid InRelease [165 kB] Get:2 http://127.0.0.1:12990/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://127.0.0.1:12990/debian sid/main Sources T-2021-10-26-1401.46-F-2021-10-26-0202.15.pdiff [34.5 kB] Get:4 http://127.0.0.1:12990/debian sid/main Sources T-2021-10-26-1401.46-F-2021-10-26-0202.15.pdiff [34.5 kB] Get:5 http://127.0.0.1:12990/debian sid/main amd64 Packages T-2021-10-26-1401.46-F-2021-10-26-0202.15.pdiff [38.7 kB] Get:5 http://127.0.0.1:12990/debian sid/main amd64 Packages T-2021-10-26-1401.46-F-2021-10-26-0202.15.pdiff [38.7 kB] Get:6 http://127.0.0.1:12990/debian sid/main Translation-en [6585 kB] Fetched 6951 kB in 3s (2755 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-13 libomp-13-dev libobjc-9-dev Reading package lists... Building dependency tree... The following additional packages will be installed: lib32gcc-s1 lib32stdc++6 libasan5 libbsd0 libc6-i386 libclang-common-13-dev libclang-cpp13 libclang1-13 libedit2 libgc1 libgcc-9-dev libicu67 libllvm13 libmd0 libobjc-11-dev libobjc4 libomp5-13 libxml2 libz3-4 Suggested packages: clang-13-doc libomp-13-doc Recommended packages: llvm-13-dev python3 The following NEW packages will be installed: clang-13 lib32gcc-s1 lib32stdc++6 libasan5 libbsd0 libc6-i386 libclang-common-13-dev libclang-cpp13 libclang1-13 libedit2 libgc1 libgcc-9-dev libicu67 libllvm13 libmd0 libobjc-11-dev libobjc-9-dev libobjc4 libomp-13-dev libomp5-13 libxml2 libz3-4 0 upgraded, 22 newly installed, 0 to remove and 0 not upgraded. Need to get 68.5 MB of archives. After this operation, 379 MB of additional disk space will be used. Get:1 http://127.0.0.1:12990/debian sid/main amd64 libmd0 amd64 1.0.4-1 [29.6 kB] Get:2 http://127.0.0.1:12990/debian sid/main amd64 libbsd0 amd64 0.11.3-1 [108 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 libedit2 amd64 3.1-20210910-1 [97.5 kB] Get:4 http://127.0.0.1:12990/debian sid/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:5 http://127.0.0.1:12990/debian sid/main amd64 libxml2 amd64 2.9.12+dfsg-5 [696 kB] Get:6 http://127.0.0.1:12990/debian sid/main amd64 libz3-4 amd64 4.8.12-1+b1 [6997 kB] Get:7 http://127.0.0.1:12990/debian sid/main amd64 libllvm13 amd64 1:13.0.0-8 [19.7 MB] Get:8 http://127.0.0.1:12990/debian sid/main amd64 libclang-cpp13 amd64 1:13.0.0-8 [10.5 MB] Get:9 http://127.0.0.1:12990/debian sid/main amd64 libgc1 amd64 1:8.0.4-3 [239 kB] Get:10 http://127.0.0.1:12990/debian sid/main amd64 libobjc4 amd64 11.2.0-10 [43.2 kB] Get:11 http://127.0.0.1:12990/debian sid/main amd64 libobjc-11-dev amd64 11.2.0-10 [170 kB] Get:12 http://127.0.0.1:12990/debian sid/main amd64 libc6-i386 amd64 2.32-4 [2624 kB] Get:13 http://127.0.0.1:12990/debian sid/main amd64 lib32gcc-s1 amd64 11.2.0-10 [49.9 kB] Get:14 http://127.0.0.1:12990/debian sid/main amd64 lib32stdc++6 amd64 11.2.0-10 [601 kB] Get:15 http://127.0.0.1:12990/debian sid/main amd64 libclang-common-13-dev amd64 1:13.0.0-8 [5730 kB] Get:16 http://127.0.0.1:12990/debian sid/main amd64 libclang1-13 amd64 1:13.0.0-8 [6093 kB] Get:17 http://127.0.0.1:12990/debian sid/main amd64 clang-13 amd64 1:13.0.0-8 [119 kB] Get:18 http://127.0.0.1:12990/debian sid/main amd64 libasan5 amd64 9.4.0-3 [2734 kB] Get:19 http://127.0.0.1:12990/debian sid/main amd64 libgcc-9-dev amd64 9.4.0-3 [2343 kB] Get:20 http://127.0.0.1:12990/debian sid/main amd64 libobjc-9-dev amd64 9.4.0-3 [219 kB] Get:21 http://127.0.0.1:12990/debian sid/main amd64 libomp5-13 amd64 1:13.0.0-8 [377 kB] Get:22 http://127.0.0.1:12990/debian sid/main amd64 libomp-13-dev amd64 1:13.0.0-8 [482 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 68.5 MB in 1s (133 MB/s) Selecting previously unselected package libmd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12431 files and directories currently installed.) Preparing to unpack .../00-libmd0_1.0.4-1_amd64.deb ... Unpacking libmd0:amd64 (1.0.4-1) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../01-libbsd0_0.11.3-1_amd64.deb ... Unpacking libbsd0:amd64 (0.11.3-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../02-libedit2_3.1-20210910-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20210910-1) ... Selecting previously unselected package libicu67:amd64. Preparing to unpack .../03-libicu67_67.1-7_amd64.deb ... Unpacking libicu67:amd64 (67.1-7) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../04-libxml2_2.9.12+dfsg-5_amd64.deb ... Unpacking libxml2:amd64 (2.9.12+dfsg-5) ... Selecting previously unselected package libz3-4:amd64. Preparing to unpack .../05-libz3-4_4.8.12-1+b1_amd64.deb ... Unpacking libz3-4:amd64 (4.8.12-1+b1) ... Selecting previously unselected package libllvm13:amd64. Preparing to unpack .../06-libllvm13_1%3a13.0.0-8_amd64.deb ... Unpacking libllvm13:amd64 (1:13.0.0-8) ... Selecting previously unselected package libclang-cpp13. Preparing to unpack .../07-libclang-cpp13_1%3a13.0.0-8_amd64.deb ... Unpacking libclang-cpp13 (1:13.0.0-8) ... Selecting previously unselected package libgc1:amd64. Preparing to unpack .../08-libgc1_1%3a8.0.4-3_amd64.deb ... Unpacking libgc1:amd64 (1:8.0.4-3) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../09-libobjc4_11.2.0-10_amd64.deb ... Unpacking libobjc4:amd64 (11.2.0-10) ... Selecting previously unselected package libobjc-11-dev:amd64. Preparing to unpack .../10-libobjc-11-dev_11.2.0-10_amd64.deb ... Unpacking libobjc-11-dev:amd64 (11.2.0-10) ... Selecting previously unselected package libc6-i386. Preparing to unpack .../11-libc6-i386_2.32-4_amd64.deb ... Unpacking libc6-i386 (2.32-4) ... Selecting previously unselected package lib32gcc-s1. Preparing to unpack .../12-lib32gcc-s1_11.2.0-10_amd64.deb ... Unpacking lib32gcc-s1 (11.2.0-10) ... Selecting previously unselected package lib32stdc++6. Preparing to unpack .../13-lib32stdc++6_11.2.0-10_amd64.deb ... Unpacking lib32stdc++6 (11.2.0-10) ... Selecting previously unselected package libclang-common-13-dev. Preparing to unpack .../14-libclang-common-13-dev_1%3a13.0.0-8_amd64.deb ... Unpacking libclang-common-13-dev (1:13.0.0-8) ... Selecting previously unselected package libclang1-13. Preparing to unpack .../15-libclang1-13_1%3a13.0.0-8_amd64.deb ... Unpacking libclang1-13 (1:13.0.0-8) ... Selecting previously unselected package clang-13. Preparing to unpack .../16-clang-13_1%3a13.0.0-8_amd64.deb ... Unpacking clang-13 (1:13.0.0-8) ... Selecting previously unselected package libasan5:amd64. Preparing to unpack .../17-libasan5_9.4.0-3_amd64.deb ... Unpacking libasan5:amd64 (9.4.0-3) ... Selecting previously unselected package libgcc-9-dev:amd64. Preparing to unpack .../18-libgcc-9-dev_9.4.0-3_amd64.deb ... Unpacking libgcc-9-dev:amd64 (9.4.0-3) ... Selecting previously unselected package libobjc-9-dev:amd64. Preparing to unpack .../19-libobjc-9-dev_9.4.0-3_amd64.deb ... Unpacking libobjc-9-dev:amd64 (9.4.0-3) ... Selecting previously unselected package libomp5-13:amd64. Preparing to unpack .../20-libomp5-13_1%3a13.0.0-8_amd64.deb ... Unpacking libomp5-13:amd64 (1:13.0.0-8) ... Selecting previously unselected package libomp-13-dev. Preparing to unpack .../21-libomp-13-dev_1%3a13.0.0-8_amd64.deb ... Unpacking libomp-13-dev (1:13.0.0-8) ... Setting up libicu67:amd64 (67.1-7) ... Setting up libasan5:amd64 (9.4.0-3) ... Setting up libz3-4:amd64 (4.8.12-1+b1) ... Setting up libgc1:amd64 (1:8.0.4-3) ... Setting up libmd0:amd64 (1.0.4-1) ... Setting up libc6-i386 (2.32-4) ... Setting up libomp5-13:amd64 (1:13.0.0-8) ... Setting up libbsd0:amd64 (0.11.3-1) ... Setting up libxml2:amd64 (2.9.12+dfsg-5) ... Setting up libedit2:amd64 (3.1-20210910-1) ... Setting up libobjc4:amd64 (11.2.0-10) ... Setting up libgcc-9-dev:amd64 (9.4.0-3) ... Setting up lib32gcc-s1 (11.2.0-10) ... Setting up lib32stdc++6 (11.2.0-10) ... Setting up libllvm13:amd64 (1:13.0.0-8) ... Setting up libobjc-9-dev:amd64 (9.4.0-3) ... Setting up libclang-common-13-dev (1:13.0.0-8) ... Setting up libomp-13-dev (1:13.0.0-8) ... Setting up libobjc-11-dev:amd64 (11.2.0-10) ... Setting up libclang1-13 (1:13.0.0-8) ... Setting up libclang-cpp13 (1:13.0.0-8) ... Setting up clang-13 (1:13.0.0-8) ... Processing triggers for libc-bin (2.32-4) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6 7 8 9 10 11' + cd /usr/bin + for VERSION in $VERSIONS + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-13 g++-4.6 + ln -s clang-13 gcc-4.6 + ln -s clang-13 cpp-4.6 + ln -s clang-13 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-13 g++-4.7 + ln -s clang-13 gcc-4.7 + ln -s clang-13 cpp-4.7 + ln -s clang-13 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-13 g++-4.8 + ln -s clang-13 gcc-4.8 + ln -s clang-13 cpp-4.8 + ln -s clang-13 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-13 g++-4.9 + ln -s clang-13 gcc-4.9 + ln -s clang-13 cpp-4.9 + ln -s clang-13 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-13 g++-5 + ln -s clang-13 gcc-5 + ln -s clang-13 cpp-5 + ln -s clang-13 gcc + echo 'gcc-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-13 g++-6 + ln -s clang-13 gcc-6 + ln -s clang-13 cpp-6 + ln -s clang-13 gcc + echo 'gcc-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-7 gcc-7 cpp-7 gcc + ln -s clang++-13 g++-7 + ln -s clang-13 gcc-7 + ln -s clang-13 cpp-7 + ln -s clang-13 gcc + echo 'gcc-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-8 gcc-8 cpp-8 gcc + ln -s clang++-13 g++-8 + ln -s clang-13 gcc-8 + ln -s clang-13 cpp-8 + ln -s clang-13 gcc + echo 'gcc-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-9 gcc-9 cpp-9 gcc + ln -s clang++-13 g++-9 + ln -s clang-13 gcc-9 + ln -s clang-13 cpp-9 + ln -s clang-13 gcc + echo 'gcc-9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-10 gcc-10 cpp-10 gcc + ln -s clang++-13 g++-10 + ln -s clang-13 gcc-10 + ln -s clang-13 cpp-10 + ln -s clang-13 gcc + echo 'gcc-10 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-10 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-10 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-10 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-11 gcc-11 cpp-11 gcc + ln -s clang++-13 g++-11 + ln -s clang-13 gcc-11 + ln -s clang-13 cpp-11 + ln -s clang-13 gcc + echo 'gcc-11 hold' + dpkg --set-selections + echo 'g++-11 hold' + dpkg --set-selections + cd - /build/libmaus2-oR9X4o + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang + cd /usr/bin/ + rm -f clang++ clang + ln -s clang-13 clang++ + ln -s clang-13 clang + clang++ --version Debian clang version 13.0.0-8 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/bin + clang --version Debian clang version 13.0.0-8 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/bin + cd - /build/libmaus2-oR9X4o + apt install --yes --no-install-recommends --force-yes qt5-qmake WARNING: apt does not have a stable CLI interface. Use with caution in scripts. Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: qt5-qmake-bin qtchooser The following NEW packages will be installed: qt5-qmake qt5-qmake-bin qtchooser 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 1322 kB of archives. After this operation, 4914 kB of additional disk space will be used. Get:1 http://127.0.0.1:12990/debian sid/main amd64 qt5-qmake-bin amd64 5.15.2+dfsg-12 [1046 kB] Get:2 http://127.0.0.1:12990/debian sid/main amd64 qtchooser amd64 66-2 [26.3 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 qt5-qmake amd64 5.15.2+dfsg-12 [249 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1322 kB in 0s (57.0 MB/s) Selecting previously unselected package qt5-qmake-bin. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13528 files and directories currently installed.) Preparing to unpack .../qt5-qmake-bin_5.15.2+dfsg-12_amd64.deb ... Unpacking qt5-qmake-bin (5.15.2+dfsg-12) ... Selecting previously unselected package qtchooser. Preparing to unpack .../qtchooser_66-2_amd64.deb ... Unpacking qtchooser (66-2) ... Selecting previously unselected package qt5-qmake:amd64. Preparing to unpack .../qt5-qmake_5.15.2+dfsg-12_amd64.deb ... Unpacking qt5-qmake:amd64 (5.15.2+dfsg-12) ... Setting up qt5-qmake-bin (5.15.2+dfsg-12) ... Setting up qtchooser (66-2) ... Setting up qt5-qmake:amd64 (5.15.2+dfsg-12) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + cp /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-clang/qmake.conf /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-clang/qplatformdefs.h /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++/ + ls -al /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++/ total 16 drwxr-xr-x 2 root root 4096 Oct 26 18:30 . drwxr-xr-x 76 root root 4096 Oct 26 18:30 .. -rw-r--r-- 1 root root 276 Oct 26 18:30 qmake.conf -rw-r--r-- 1 root root 3218 Oct 26 18:30 qplatformdefs.h + cat /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++/qmake.conf # # qmake configuration for linux-clang # MAKEFILE_GENERATOR = UNIX CONFIG += incremental QMAKE_INCREMENTAL_STYLE = sublib include(../common/linux.conf) include(../common/gcc-base-unix.conf) include(../common/clang.conf) QMAKE_LFLAGS += -ccc-gcc-name g++ load(qt_config) + export QMAKESPEC=/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-clang/ + QMAKESPEC=/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-clang/ + sed -i -e 's|compare_problem(2,|compare_problem(0,|g' /usr/bin/dpkg-gensymbols + sed -i -e 's|compare_problem(1,|compare_problem(0,|g' /usr/bin/dpkg-gensymbols + grep 'compare_problem(' /usr/bin/dpkg-gensymbols compare_problem(4, g_('new libraries appeared in the symbols file: %s'), "@libs"); compare_problem(3, g_('some libraries disappeared in the symbols file: %s'), "@libs"); compare_problem(0, g_('some new symbols appeared in the symbols file: %s'), compare_problem(0, g_('some symbols or patterns disappeared in the symbols file: %s'), I: Finished running '/tmp/clang13'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/libmaus2-oR9X4o/resolver-dhq9fd' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:12990/debian sid InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'libmaus2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libmaus2.git Please use: git clone https://salsa.debian.org/med-team/libmaus2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1648 kB of source archives. Get:1 http://127.0.0.1:12990/debian sid/main libmaus2 2.0.806+ds-1 (dsc) [2196 B] Get:2 http://127.0.0.1:12990/debian sid/main libmaus2 2.0.806+ds-1 (tar) [1640 kB] Get:3 http://127.0.0.1:12990/debian sid/main libmaus2 2.0.806+ds-1 (diff) [6000 B] Fetched 1648 kB in 0s (17.9 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/libmaus2-oR9X4o/libmaus2-2.0.806+ds' with '<>' I: NOTICE: Log filtering will replace 'build/libmaus2-oR9X4o' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), d-shlibs, libboost-atomic-dev, libsecrecy-dev, pkg-config, zlib1g-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, libboost-atomic-dev, libsecrecy-dev, pkg-config, zlib1g-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [411 B] Get:5 copy:/<>/apt_archive ./ Packages [493 B] Fetched 1861 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dirmngr dwz file gettext gettext-base gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm groff-base intltool-debian libarchive-zip-perl libassuan-dev libassuan0 libboost-atomic-dev libboost-atomic1.74-dev libboost-atomic1.74.0 libboost1.74-dev libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libgcc-10-dev libglib2.0-0 libgmp-dev libgmpxx4ldbl libgpg-error-dev libgpgme-dev libgpgme11 libksba8 libldap-2.4-2 libmagic-mgc libmagic1 libncursesw6 libnpth0 libpipeline1 libreadline8 libsasl2-2 libsasl2-modules-db libsecrecy-dev libsigsegv2 libsqlite3-0 libstdc++-10-dev libsub-override-perl libtool libuchardet0 m4 man-db nettle-dev pinentry-curses pkg-config po-debconf readline-common sensible-utils zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make dbus-user-session libpam-systemd pinentry-gnome3 tor gettext-doc libasprintf-dev libgettextpo-dev parcimonie xloadimage scdaemon groff libboost1.74-doc libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev gmp-doc libgmp10-doc libmpfr-dev libstdc++-10-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser pinentry-doc libmail-box-perl readline-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libldap-common libgpm2 libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dirmngr dwz file gettext gettext-base gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm groff-base intltool-debian libarchive-zip-perl libassuan-dev libassuan0 libboost-atomic-dev libboost-atomic1.74-dev libboost-atomic1.74.0 libboost1.74-dev libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libgcc-10-dev libglib2.0-0 libgmp-dev libgmpxx4ldbl libgpg-error-dev libgpgme-dev libgpgme11 libksba8 libldap-2.4-2 libmagic-mgc libmagic1 libncursesw6 libnpth0 libpipeline1 libreadline8 libsasl2-2 libsasl2-modules-db libsecrecy-dev libsigsegv2 libsqlite3-0 libstdc++-10-dev libsub-override-perl libtool libuchardet0 m4 man-db nettle-dev pinentry-curses pkg-config po-debconf readline-common sbuild-build-depends-main-dummy sensible-utils zlib1g-dev 0 upgraded, 69 newly installed, 0 to remove and 0 not upgraded. Need to get 37.3 MB of archives. After this operation, 241 MB of additional disk space will be used. 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1.74.0-11 [9533 kB] Get:58 http://127.0.0.1:12990/debian sid/main amd64 libboost-atomic1.74.0 amd64 1.74.0-11 [244 kB] Get:59 http://127.0.0.1:12990/debian sid/main amd64 libboost-atomic1.74-dev amd64 1.74.0-11 [245 kB] Get:60 http://127.0.0.1:12990/debian sid/main amd64 libboost-atomic-dev amd64 1.74.0.3 [4640 B] Get:61 http://127.0.0.1:12990/debian sid/main amd64 libglib2.0-0 amd64 2.70.0-3 [1401 kB] Get:62 http://127.0.0.1:12990/debian sid/main amd64 libgmpxx4ldbl amd64 2:6.2.1+dfsg-2 [338 kB] Get:63 http://127.0.0.1:12990/debian sid/main amd64 libgmp-dev amd64 2:6.2.1+dfsg-2 [641 kB] Get:64 http://127.0.0.1:12990/debian sid/main amd64 libgpgme11 amd64 1.16.0-1.1 [291 kB] Get:65 http://127.0.0.1:12990/debian sid/main amd64 libgpgme-dev amd64 1.16.0-1.1 [501 kB] Get:66 http://127.0.0.1:12990/debian sid/main amd64 pkg-config amd64 0.29.2-1 [65.1 kB] Get:67 http://127.0.0.1:12990/debian sid/main amd64 nettle-dev amd64 3.7.3-1 [1263 kB] Get:68 http://127.0.0.1:12990/debian sid/main amd64 libsecrecy-dev amd64 0.0.5+ds-2 [21.2 kB] Get:69 http://127.0.0.1:12990/debian sid/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 37.3 MB in 0s (153 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 14273 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.37.2-4_amd64.deb ... Unpacking bsdextrautils (2.37.2-4) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-7_amd64.deb ... Unpacking groff-base (1.22.4-7) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../05-readline-common_8.1-2_all.deb ... Unpacking readline-common (8.1-2) ... 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Setting up libmagic1:amd64 (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up libnpth0:amd64 (1.6-3) ... Setting up file (1:5.39-3) ... Setting up libassuan0:amd64 (2.5.5-1) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libgmpxx4ldbl:amd64 (2:6.2.1+dfsg-2) ... Setting up libgpg-error-dev (1.42-3) ... Setting up gnupg-l10n (2.2.27-2) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up pkg-config (0.29.2-1) ... Setting up libassuan-dev (2.5.5-1) ... Setting up d-shlibs (0.103) ... Setting up libncursesw6:amd64 (6.2+20210905-1) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2.1) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2) ... Setting up sensible-utils (0.0.17) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libelf1:amd64 (0.185-2) ... Setting up readline-common (8.1-2) ... Setting up pinentry-curses (1.1.0-4) ... Setting up libfile-stripnondeterminism-perl (1.12.0-2) ... Setting up gettext (0.21-4) ... Setting up libstdc++-10-dev:amd64 (10.3.0-11) ... Setting up libboost1.74-dev:amd64 (1.74.0-11) ... Setting up libgmp-dev:amd64 (2:6.2.1+dfsg-2) ... Setting up nettle-dev:amd64 (3.7.3-1) ... Setting up libtool (2.4.6-15) ... Setting up libreadline8:amd64 (8.1-2) ... Setting up libldap-2.4-2:amd64 (2.4.59+dfsg-1) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up autoconf (2.71-2) ... Setting up libboost-atomic1.74-dev:amd64 (1.74.0-11) ... Setting up dh-strip-nondeterminism (1.12.0-2) ... Setting up libboost-atomic-dev:amd64 (1.74.0.3) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-7) ... Setting up gpgconf (2.2.27-2) ... Setting up gpg (2.2.27-2) ... Setting up gnupg-utils (2.2.27-2) ... Setting up automake (1:1.16.5-1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gpg-agent (2.2.27-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up gpgsm (2.2.27-2) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libgpgme11:amd64 (1.16.0-1.1) ... Setting up dh-autoreconf (20) ... Setting up dirmngr (2.2.27-2) ... Setting up libgpgme-dev (1.16.0-1.1) ... Setting up gpg-wks-server (2.2.27-2) ... Setting up libsecrecy-dev:amd64 (0.0.5+ds-2) ... Setting up gpg-wks-client (2.2.27-2) ... Setting up debhelper (13.5.2) ... Setting up gnupg (2.2.27-2) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.32-4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-6-cloud-amd64 #1 SMP Debian 4.19.67-2+deb10u2 (2019-11-11) amd64 (x86_64) Toolchain package versions: binutils_2.37-7 dpkg-dev_1.20.9 g++-11_11.2.0-10 gcc-11_11.2.0-10 libc6-dev_2.32-4 libstdc++-10-dev_10.3.0-11 libstdc++-11-dev_11.2.0-10 libstdc++6_11.2.0-10 linux-libc-dev_5.14.12-1 Package versions: adduser_3.118 apt_2.3.11 autoconf_2.71-2 automake_1:1.16.5-1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12 base-passwd_3.5.52 bash_5.1-3+b2 binutils_2.37-7 binutils-common_2.37-7 binutils-x86-64-linux-gnu_2.37-7 bsdextrautils_2.37.2-4 bsdutils_1:2.37.2-4 build-essential_12.9 bzip2_1.0.8-4 clang-13_1:13.0.0-8 coreutils_8.32-4+b1 cpp_4:11.2.0-2 cpp-11_11.2.0-10 d-shlibs_0.103 dash_0.5.11+git20210120+802ebd4-2 debconf_1.5.78 debhelper_13.5.2 debian-archive-keyring_2021.1.1 debianutils_5.5-1 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-2 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9 dpkg-dev_1.20.9 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.26-1 file_1:5.39-3 findutils_4.8.0-1 g++_4:11.2.0-2 g++-11_11.2.0-10 gcc_4:11.2.0-2 gcc-10-base_10.3.0-11 gcc-11_11.2.0-10 gcc-11-base_11.2.0-10 gcc-9-base_9.4.0-3 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 lib32gcc-s1_11.2.0-10 lib32stdc++6_11.2.0-10 libacl1_2.3.1-1 libapt-pkg6.0_2.3.11 libarchive-zip-perl_1.68-1 libasan5_9.4.0-3 libasan6_11.2.0-10 libassuan-dev_2.5.5-1 libassuan0_2.5.5-1 libatomic1_11.2.0-10 libattr1_1:2.5.1-1 libaudit-common_1:3.0.6-1 libaudit1_1:3.0.6-1 libbinutils_2.37-7 libblkid1_2.37.2-4 libboost-atomic-dev_1.74.0.3 libboost-atomic1.74-dev_1.74.0-11 libboost-atomic1.74.0_1.74.0-11 libboost1.74-dev_1.74.0-11 libbsd0_0.11.3-1 libbz2-1.0_1.0.8-4 libc-bin_2.32-4 libc-dev-bin_2.32-4 libc6_2.32-4 libc6-dev_2.32-4 libc6-i386_2.32-4 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-10 libclang-common-13-dev_1:13.0.0-8 libclang-cpp13_1:13.0.0-8 libclang1-13_1:13.0.0-8 libcom-err2_1.46.4-1 libcrypt-dev_1:4.4.25-2 libcrypt1_1:4.4.25-2 libctf-nobfd0_2.37-7 libctf0_2.37-7 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.5.2 libdpkg-perl_1.20.9 libedit2_3.1-20210910-1 libelf1_0.185-2 libext2fs2_1.46.4-1 libfakeroot_1.26-1 libffi8_3.4.2-3 libfile-stripnondeterminism-perl_1.12.0-2 libgc1_1:8.0.4-3 libgcc-10-dev_10.3.0-11 libgcc-11-dev_11.2.0-10 libgcc-9-dev_9.4.0-3 libgcc-s1_11.2.0-10 libgcrypt20_1.9.4-3+b1 libgdbm-compat4_1.22-1 libgdbm6_1.22-1 libglib2.0-0_2.70.0-3 libgmp-dev_2:6.2.1+dfsg-2 libgmp10_2:6.2.1+dfsg-2 libgmpxx4ldbl_2:6.2.1+dfsg-2 libgnutls30_3.7.2-2 libgomp1_11.2.0-10 libgpg-error-dev_1.42-3 libgpg-error0_1.42-3 libgpgme-dev_1.16.0-1.1 libgpgme11_1.16.0-1.1 libgssapi-krb5-2_1.18.3-7 libhogweed6_3.7.3-1 libicu67_67.1-7 libidn2-0_2.3.2-2 libisl23_0.24-2 libitm1_11.2.0-10 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libksba8_1.6.0-2 libldap-2.4-2_2.4.59+dfsg-1 libllvm13_1:13.0.0-8 liblsan0_11.2.0-10 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmd0_1.0.4-1 libmount1_2.37.2-4 libmpc3_1.2.1-1 libmpfr6_4.1.0-3 libncursesw6_6.2+20210905-1 libnettle8_3.7.3-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libobjc-11-dev_11.2.0-10 libobjc-9-dev_9.4.0-3 libobjc4_11.2.0-10 libomp-13-dev_1:13.0.0-8 libomp5-13_1:13.0.0-8 libp11-kit0_0.24.0-5 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-6 libpipeline1_1.5.3-1 libquadmath0_11.2.0-10 libreadline8_8.1-2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.2-2 libsecrecy-dev_0.0.5+ds-2 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b2 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.37.2-4 libsqlite3-0_3.36.0-2 libss2_1.46.4-1 libssl1.1_1.1.1l-1 libstdc++-10-dev_10.3.0-11 libstdc++-11-dev_11.2.0-10 libstdc++6_11.2.0-10 libsub-override-perl_0.09-2 libsystemd0_249.5-1 libtasn1-6_4.17.0-2 libtinfo6_6.2+20210905-1 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libtsan0_11.2.0-10 libubsan1_11.2.0-10 libuchardet0_0.0.7-1 libudev1_249.5-1 libunistring2_0.9.10-6 libuuid1_2.37.2-4 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-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libmaus2 Binary: libmaus2-2, libmaus2-dev Architecture: any Version: 2.0.806+ds-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Steffen Moeller , Étienne Mollier Homepage: https://gitlab.com/german.tischler/libmaus2 Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/libmaus2 Vcs-Git: https://salsa.debian.org/med-team/libmaus2.git Build-Depends: debhelper-compat (= 13), d-shlibs, libboost-atomic-dev, libsecrecy-dev, pkg-config, zlib1g-dev Package-List: libmaus2-2 deb libs optional arch=any libmaus2-dev deb libdevel optional arch=any Checksums-Sha1: a520c7a57266077ddd57966bbfe1b40072ac6bc8 1639824 libmaus2_2.0.806+ds.orig.tar.xz af632b77133baee822ffb20c4cfd928163a658cd 6000 libmaus2_2.0.806+ds-1.debian.tar.xz Checksums-Sha256: f6d3fdedabacd302ddc1f891b6cd6b377a552413d6e43f296aa17972ea8872e6 1639824 libmaus2_2.0.806+ds.orig.tar.xz bfa85071b49c5c502041b706da11003472cfc781ff63f0f63c7364e949534ce5 6000 libmaus2_2.0.806+ds-1.debian.tar.xz Files: 2d8de83538ee57bad0cf2f82e8c2b450 1639824 libmaus2_2.0.806+ds.orig.tar.xz 152810017650de8c869b6ad15a137634 6000 libmaus2_2.0.806+ds-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmF1Y74UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdq5eQ/+KcYOqrAA7ITxWJwjpCiB/aw0SODs HGBb+aZOF3kVTbx/AEZYau3bkZpCsKH7MJ9DX5tLLyZkwrHgSorg+FyWrJfpicIf lnlu8upmH3z7OJdKSJ8VVOxrOfGU6cjkmAef9yQjGdrCiPnLTSuMgt1YDLi1/qND qZ17ymy2Uuy0UuZb1ZxFMKJi8JJP6fW6WJFzNOZx+TEERNdOAu1k0yrHb4Xm7jNN XTw4l744KEejI+ilpK+YyBuUoh+6fMh9HnUR+VmQxQ9409++jtcjQKzaDVjFx3ci Qfqr8RyS8GI7agNTHrT8akrrsBUqqqi8EVDlria8DRWJbVAquDnV3cHD0XhUVMe2 GrcivHJuK77HPwYibk8oiQ4icwzrv+8/ltOKxW6zC20ltpjArSXvl8+we+0uod1h /Ykn5ko13JJbl/2FEJrVYXBMX7rH7Fet4GLjod6hNMgNqWcQMw9TYiL/PH5aK29r MC7O9RTZsnOQLd7V9sKeeAZoThSXpcl9NaosTQ96E0XHRzPyJ4zis2kt32Va+7Ip SwJ+lqCIZVrTrk1ixisntQvoPeVh73Oi7XSvs+lYBfLjAwytjn9raJ/Wc/lA9l4z zyW1jc7ET0AuO3HT4FVgQP6YcvldFeWaAD1HxbYO4m5MNWUscOGCO0+63XZKtR3q DWd/heupF8p1oEA= =afQC -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.ITIt4OUO/trustedkeys.kbx': General error gpgv: Signature made Sun Oct 24 13:46:38 2021 UTC gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libmaus2_2.0.806+ds-1.dsc dpkg-source: info: extracting libmaus2 in /<> dpkg-source: info: unpacking libmaus2_2.0.806+ds.orig.tar.xz dpkg-source: info: unpacking libmaus2_2.0.806+ds-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=sid-amd64-sbuild-ed828771-fd85-4835-b3df-c8944194983e SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -b -rfakeroot dpkg-buildpackage: info: source package libmaus2 dpkg-buildpackage: info: source version 2.0.806+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:4: warning: The macro `AC_CANONICAL_SYSTEM' is obsolete. configure.ac:4: You should run autoupdate. ./lib/autoconf/general.m4:2081: AC_CANONICAL_SYSTEM is expanded from... configure.ac:4: the top level configure.ac:6: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:6: You should run autoupdate. m4/libtool.m4:99: AC_PROG_LIBTOOL is expanded from... configure.ac:6: the top level configure.ac:9: warning: 'AM_CONFIG_HEADER': this macro is obsolete. configure.ac:9: You should use the 'AC_CONFIG_HEADERS' macro instead. ./lib/autoconf/general.m4:2434: AC_DIAGNOSE is expanded from... aclocal.m4:1021: AM_CONFIG_HEADER is expanded from... configure.ac:9: the top level configure.ac:77: warning: The macro `AC_TRY_LINK' is obsolete. configure.ac:77: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... configure.ac:77: the top level configure.ac:153: warning: The macro `AC_TRY_LINK' is obsolete. configure.ac:153: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... configure.ac:153: the top level configure.ac:211: warning: The macro `AC_TRY_LINK' is obsolete. configure.ac:211: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... configure.ac:211: the top level configure.ac:247: warning: The macro `AC_TRY_LINK' is obsolete. configure.ac:247: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... configure.ac:247: the top level configure.ac:276: warning: The macro `AC_TRY_LINK' is obsolete. configure.ac:276: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... configure.ac:276: the top level configure.ac:331: warning: The macro `AC_TRY_LINK' is obsolete. configure.ac:331: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... configure.ac:331: the top level configure.ac:386: warning: The macro `AC_TRY_LINK' is obsolete. configure.ac:386: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... configure.ac:386: the top level configure.ac:565: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:565: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:565: the top level configure.ac:577: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:577: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:577: the top level configure.ac:589: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:589: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:589: the top level configure.ac:601: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:601: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:601: the top level configure.ac:613: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:613: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:613: the top level configure.ac:627: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:627: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:627: the top level configure.ac:641: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:641: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:641: the top level configure.ac:655: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:655: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:655: the top level configure.ac:669: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:669: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:669: the top level configure.ac:683: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:683: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:683: the top level configure.ac:696: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:696: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:696: the top level configure.ac:713: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:713: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:713: the top level configure.ac:727: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:727: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:727: the top level configure.ac:743: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:743: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:743: the top level configure.ac:759: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:759: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:759: the top level configure.ac:773: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:773: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:773: the top level configure.ac:786: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:786: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:786: the top level configure.ac:800: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:800: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:800: the top level configure.ac:813: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:813: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:813: the top level configure.ac:829: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:829: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:829: the top level configure.ac:838: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:838: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:838: the top level configure.ac:851: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:851: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:851: the top level configure.ac:865: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:865: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:865: the top level configure.ac:879: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:879: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:879: the top level configure.ac:893: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:893: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:893: the top level configure.ac:909: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:909: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:909: the top level configure.ac:951: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:951: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:951: the top level configure.ac:969: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:969: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:969: the top level configure.ac:988: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:988: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:988: the top level configure.ac:1003: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1003: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1003: the top level configure.ac:1020: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1020: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1020: the top level configure.ac:1038: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1038: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1038: the top level configure.ac:1056: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1056: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1056: the top level configure.ac:1073: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1073: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1073: the top level configure.ac:1090: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1090: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1090: the top level configure.ac:1107: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1107: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1107: the top level configure.ac:1124: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1124: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1124: the top level configure.ac:1157: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1157: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1157: the top level configure.ac:1174: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1174: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1174: the top level configure.ac:1191: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1191: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1191: the top level configure.ac:1224: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1224: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1224: the top level configure.ac:1242: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1242: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1242: the top level configure.ac:1260: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1260: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1260: the top level configure.ac:1280: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1280: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1280: the top level configure.ac:1300: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1300: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1300: the top level configure.ac:1320: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1320: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1320: the top level configure.ac:1340: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1340: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1340: the top level configure.ac:1360: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1360: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1360: the top level configure.ac:1380: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1380: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1380: the top level configure.ac:1400: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1400: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1400: the top level configure.ac:1437: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1437: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1437: the top level configure.ac:1457: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1457: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1457: the top level configure.ac:1477: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1477: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1477: the top level configure.ac:1497: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1497: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1497: the top level configure.ac:1536: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1536: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1536: the top level configure.ac:1556: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1556: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1556: the top level configure.ac:1577: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1577: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1577: the top level configure.ac:1597: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1597: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1597: the top level configure.ac:1612: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1612: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1612: the top level configure.ac:1690: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1690: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1690: the top level configure.ac:1699: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1699: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1699: the top level configure.ac:1715: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1715: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1715: the top level configure.ac:1731: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1731: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1731: the top level configure.ac:1744: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1744: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1744: the top level configure.ac:1759: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1759: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1759: the top level configure.ac:1773: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1773: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1773: the top level configure.ac:1787: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1787: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1787: the top level configure.ac:1800: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1800: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1800: the top level configure.ac:1819: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1819: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1819: the top level configure.ac:1900: warning: The macro `AC_TRY_LINK' is obsolete. configure.ac:1900: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... lib/m4sugar/m4sh.m4:692: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:699: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... m4/ax_openmp.m4:68: AX_OPENMP is expanded from... configure.ac:1900: the top level configure.ac:1910: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1910: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1910: the top level configure.ac:1926: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1926: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1926: the top level configure.ac:1946: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:1946: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:1946: the top level configure.ac:2343: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:2343: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:2343: the top level configure.ac:2382: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:2382: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:2382: the top level configure.ac:2739: warning: The macro `AC_TRY_LINK' is obsolete. configure.ac:2739: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... configure.ac:2739: the top level configure.ac:2807: warning: The macro `AC_TRY_LINK' is obsolete. configure.ac:2807: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... configure.ac:2807: the top level configure.ac:2836: warning: The macro `AC_TRY_LINK' is obsolete. configure.ac:2836: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... configure.ac:2836: the top level configure.ac:2852: warning: The macro `AC_TRY_LINK' is obsolete. configure.ac:2852: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... configure.ac:2852: the top level configure.ac:3018: warning: The macro `AC_TRY_LINK' is obsolete. configure.ac:3018: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... configure.ac:3018: the top level configure.ac:3243: warning: AC_OUTPUT should be used without arguments. configure.ac:3243: You should run autoupdate. configure.ac:6: installing './compile' configure.ac:4: installing './config.guess' configure.ac:4: installing './config.sub' configure.ac:8: installing './install-sh' configure.ac:8: installing './missing' Makefile.am: installing './INSTALL' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking configure: Configuring for source in directory . checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking for gawk... no checking for mawk... mawk checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... yes checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /bin/mkdir -p checking whether make sets $(MAKE)... yes checking whether make supports the include directive... yes (GNU style) checking whether make supports nested variables... yes checking how to create a pax tar archive... gnutar checking dependency style of gcc... none checking whether we are cross compiling... no checking for bash... /bin/bash checking for base64... /usr/bin/base64 checking for gcc... (cached) gcc checking whether the compiler supports GNU C... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to enable C11 features... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking dependency style of g++... none checking whether host cpu is x86_64... yes checking whether host os is GNU/Linux... yes checking whether we are compiling for x86_64 CPU on GNU/Linux OS ... yes checking size of unsigned long... 8 checking for winsock2.h... no checking for ws2tcpip.h... no checking for sys/wait.h... yes checking for sys/ioctl.h... yes checking for execinfo.h... yes checking for windows.h... no checking for unistd.h... (cached) yes checking for linux/sysctl.h... yes checking for features.h... yes checking for dlfcn.h... (cached) yes checking for sys/prctl.h... yes checking for libunwind.h... no checking for unw_backtrace in -lunwind... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for zlib >= 0... yes checking for libcurl >= 7.47.0... no checking for parasail-1 >= 2.4.3... no checking for zlib >= 0... yes checking whether we can compile a zlib program... yes checking for snappy.h... no checking for libdeflate.h... no checking for GetProcessMemoryInfo... no checking for dlopen... no checking for dlerror... no checking for dlsym... no checking for dlclose... no checking for dlopen in -ldl... yes checking for dlerror in -ldl... yes checking for dlsym in -ldl... yes checking for dlclose in -ldl... yes checking whether we found the dlopen function anywhere... yes checking whether we found the dlerror function anywhere... yes checking whether we found the dlsym function anywhere... yes checking whether we found the dlclose function anywhere... yes checking whether we found all the functions required for dynamic modules somewhere... yes checking whether we need the dl library for any of the dl functions... yes checking for backtrace... yes checking for gethostname... yes checking for fsync... yes checking for dup2... yes checking for execv... yes checking for mkstemp... yes checking for fcntl... yes checking for pipe... yes checking for fork... yes checking for symlink... yes checking for waitpid... yes checking for gethostbyname... yes checking for gethostbyname2... yes checking for prctl... yes checking whether SIGPIPE exists... yes checking whether SIGHUP exists... yes checking whether pid_t exists... yes checking whether getpid exists... yes checking whether O_RDONLY... yes checking whether O_WRONLY... yes checking whether O_RDWR... yes checking whether O_CREAT... yes checking whether O_TRUNC... yes checking whether OFF_T... yes checking whether lseek function exists... yes checking whether read function exists... yes checking whether fstat function exists... yes checking whether stat function exists... yes checking whether fstatfs function exists... yes checking whether sysconf function exists... yes checking whether write function exists... yes checking whether WIFEXITED exists... yes checking whether WEXITSTATUS exists... yes checking whether the C++ compiler supports the -std=c++17 flag... yes checking whether the C++ compiler supports the -msse4 flag... yes checking whether the C++ compiler supports the -msse2 flag... yes checking whether the C++ compiler supports the -mssse3 flag... yes checking whether the C++ compiler supports the -msse4.1 flag... yes checking whether the C++ compiler supports the -mavx flag... yes checking whether the C++ compiler supports the -mavx2 flag... yes checking for smmintrin.h... yes checking for immintrin.h... yes checking whether the C++ compiler supports __builtin_cpu_supports... yes checking whether the C++ compiler supports _may_i_use_cpu_feature... no checking whether the C++ compiler supports _mm_load_si128... yes checking whether the C++ compiler supports _mm_loadu_si128... yes checking whether the C++ compiler supports _mm_store_si128... yes checking whether the C++ compiler supports _mm_andnot_si128... yes checking whether the C++ compiler supports _mm_or_si128... yes checking whether the C++ compiler supports _mm_cmpeq_epi8... yes checking whether the C++ compiler supports _mm_adds_epu8... yes checking whether the C++ compiler supports _mm_min_epu8... yes checking whether the C++ compiler supports _mm_shuffle_epi8... yes checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (X128/8 variant)... yes checking whether the C++ compiler supports _mm_cmpeq_epi16... yes checking whether the C++ compiler supports _mm_adds_epu16... yes checking whether the C++ compiler supports _mm_min_epu16... yes checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (X128/16 variant)... yes checking whether the C++ compiler supports _mm256_load_si256... yes checking whether the C++ compiler supports _mm256_loadu_si256... yes checking whether the C++ compiler supports _mm256_store_si256... yes checking whether the C++ compiler supports _mm256_andnot_si256... yes checking whether the C++ compiler supports _mm256_or_si256... yes checking whether the C++ compiler supports _mm256_cmpeq_epi8... yes checking whether the C++ compiler supports _mm256_adds_epu8... yes checking whether the C++ compiler supports _mm256_shuffle_epi8... yes checking whether the C++ compiler supports _mm256_min_epu8... yes checking whether the C++ compiler supports _mm256_permute2f128_si256... yes checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (Y256/8 variant)... yes checking whether the C++ compiler supports _mm256_cmpeq_epi16... yes checking whether the C++ compiler supports _mm256_adds_epu16... yes checking whether the C++ compiler supports _mm256_min_epu16... yes checking whether the C++ compiler supports _mm256_max_epu16... yes checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (Y256/16 variant)... yes checking whether the C++ compiler supports _mm256_and_si256... yes checking whether the C++ compiler supports _mm256_i32gather_epi32... yes checking whether the C++ compiler supports _mm256_extractf128_si256... yes checking whether the C++ compiler supports _mm256_set1_epi8... yes checking whether the C++ compiler supports _mm_extract_epi8... yes checking whether the C++ compiler supports all intrinsics required for one to many global alignment using AVX2... yes checking for cstdint... yes checking whether the C++ compiler supports the -msse4 flag... yes checking for open with 2 arguments... yes checking for open with 3 arguments... yes checking for close... yes checking for O_NONBLOCK... yes checking for O_LARGEFILE... yes checking for O_BINARY... no checking for ssize_t... yes checking for socklen_t... yes checking whether the C++ compiler supports the -W flag... yes checking whether the C++ compiler supports the -Wall flag... yes checking whether the C++ compiler supports the -Wnon-virtual-dtor flag... yes checking for OpenMP flag of C++ compiler... -fopenmp checking whether the C++ compiler supports the -rdynamic flag... yes checking whether std::unique_ptr exists... yes checking whether std::shared_ptr exists... yes checking whether std::unordered_map exists... yes checking whether std::unordered_set exists... yes checking whether std::move exists... yes checking whether std::filesystem exists... yes checking whether byte ordering is bigendian... no checking for psapi.h... no checking for fcntl.h... yes checking for libgen.h... yes checking for sys/stat.h... (cached) yes checking for sys/types.h... (cached) yes checking for sys/vfs.h... yes checking for boost/smart_ptr/atomic_shared_ptr.hpp... yes checking whether std::atomic< std::shared_ptr<> > is supported... no checking whether boost::atomic_shared_ptr< > is supported... yes configure: Using atomic_shared_ptr from boost checking whether we can compile a program using statfs... yes checking whether struct statfs has field f_iosize... no checking whether struct statfs has field f_bsize... yes checking whether the C++ compiler supports the -pthread flag... yes checking whether getpagesize is present... yes checking for unsigned __int128... yes checking whether we can compile a program using the gmp library... yes checking for libsecrecy >= 0.0.0... yes checking whether we can compile a libsecrecy program... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for _LARGEFILE_SOURCE value needed for large files... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating libmaus2.pc config.status: creating ubuntu.sh config.status: creating src/libmaus2/LibMausConfig.hpp config.status: creating test/Makefile config.status: creating config.h config.status: executing libtool commands config.status: executing depfiles commands dh_auto_build make -j4 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/fastx/la-Phred.lo `test -f 'libmaus2/fastx/Phred.cpp' || echo './'`libmaus2/fastx/Phred.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bambam/la-ReadEndsContainer.lo `test -f 'libmaus2/bambam/ReadEndsContainer.cpp' || echo './'`libmaus2/bambam/ReadEndsContainer.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bambam/la-ReadEnds.lo `test -f 'libmaus2/bambam/ReadEnds.cpp' || echo './'`libmaus2/bambam/ReadEnds.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bambam/la-BamAlignmentDecoderBase.lo `test -f 'libmaus2/bambam/BamAlignmentDecoderBase.cpp' || echo './'`libmaus2/bambam/BamAlignmentDecoderBase.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/Phred.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-Phred.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/ReadEnds.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-ReadEnds.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/ReadEndsContainer.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-ReadEndsContainer.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/BamAlignmentDecoderBase.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamAlignmentDecoderBase.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/Phred.cpp -o libmaus2/fastx/la-Phred.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bambam/la-StrCmpNum.lo `test -f 'libmaus2/bambam/StrCmpNum.cpp' || echo './'`libmaus2/bambam/StrCmpNum.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/StrCmpNum.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-StrCmpNum.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/StrCmpNum.cpp -o libmaus2/bambam/la-StrCmpNum.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/huffman/la-KvInitResult.lo `test -f 'libmaus2/huffman/KvInitResult.cpp' || echo './'`libmaus2/huffman/KvInitResult.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/huffman/KvInitResult.cpp -fPIC -DPIC -o libmaus2/huffman/.libs/la-KvInitResult.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/huffman/KvInitResult.cpp -o libmaus2/huffman/la-KvInitResult.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-TempFileNameGenerator.lo `test -f 'libmaus2/util/TempFileNameGenerator.cpp' || echo './'`libmaus2/util/TempFileNameGenerator.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/TempFileNameGenerator.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-TempFileNameGenerator.o In file included from libmaus2/bambam/ReadEndsContainer.cpp:19: In file included from ./libmaus2/bambam/ReadEndsContainer.hpp:23: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27: In file included from ./libmaus2/bambam/BamAuxFilterVector.hpp:22: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from libmaus2/bambam/ReadEnds.cpp:19: In file included from ./libmaus2/bambam/ReadEnds.hpp:22: In file included from ./libmaus2/bambam/ReadEndsBase.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27: In file included from ./libmaus2/bambam/BamAuxFilterVector.hpp:22: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from libmaus2/bambam/BamAlignmentDecoderBase.cpp:19: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27: In file included from ./libmaus2/bambam/BamAuxFilterVector.hpp:22: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/TempFileNameGenerator.cpp -o libmaus2/util/la-TempFileNameGenerator.o >/dev/null 2>&1 In file included from libmaus2/bambam/ReadEnds.cpp:19: In file included from ./libmaus2/bambam/ReadEnds.hpp:22: In file included from ./libmaus2/bambam/ReadEndsBase.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ In file included from libmaus2/bambam/ReadEndsContainer.cpp:19: In file included from ./libmaus2/bambam/ReadEndsContainer.hpp:23: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ In file included from libmaus2/bambam/BamAlignmentDecoderBase.cpp:19: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ In file included from libmaus2/bambam/ReadEndsContainer.cpp:19: In file included from ./libmaus2/bambam/ReadEndsContainer.hpp:34: In file included from ./libmaus2/bambam/ReadEndsBlockDecoderBase.hpp:31: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:99:18: warning: variable 'numcache' set but not used [-Wunused-but-set-variable] unsigned int numcache = 0; ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-TempFileNameGeneratorState.lo `test -f 'libmaus2/util/TempFileNameGeneratorState.cpp' || echo './'`libmaus2/util/TempFileNameGeneratorState.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/TempFileNameGeneratorState.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-TempFileNameGeneratorState.o 3 warnings generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/BamAlignmentDecoderBase.cpp -o libmaus2/bambam/la-BamAlignmentDecoderBase.o >/dev/null 2>&1 3 warnings generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/ReadEnds.cpp -o libmaus2/bambam/la-ReadEnds.o >/dev/null 2>&1 4 warnings generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/ReadEndsContainer.cpp -o libmaus2/bambam/la-ReadEndsContainer.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-ArgInfo.lo `test -f 'libmaus2/util/ArgInfo.cpp' || echo './'`libmaus2/util/ArgInfo.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/ArgInfo.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-ArgInfo.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-BitList.lo `test -f 'libmaus2/util/BitList.cpp' || echo './'`libmaus2/util/BitList.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/BitList.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-BitList.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/BitList.cpp -o libmaus2/util/la-BitList.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-VarBitList.lo `test -f 'libmaus2/util/VarBitList.cpp' || echo './'`libmaus2/util/VarBitList.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/VarBitList.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-VarBitList.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/TempFileNameGeneratorState.cpp -o libmaus2/util/la-TempFileNameGeneratorState.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/VarBitList.cpp -o libmaus2/util/la-VarBitList.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-Concat.lo `test -f 'libmaus2/util/Concat.cpp' || echo './'`libmaus2/util/Concat.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/Concat.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-Concat.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-ConcatRequest.lo `test -f 'libmaus2/util/ConcatRequest.cpp' || echo './'`libmaus2/util/ConcatRequest.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/ArgInfo.cpp -o libmaus2/util/la-ArgInfo.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/ConcatRequest.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-ConcatRequest.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/Concat.cpp -o libmaus2/util/la-Concat.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/ConcatRequest.cpp -o libmaus2/util/la-ConcatRequest.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-ConsoleColor.lo `test -f 'libmaus2/util/ConsoleColor.cpp' || echo './'`libmaus2/util/ConsoleColor.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/ConsoleColor.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-ConsoleColor.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-DynamicLoading.lo `test -f 'libmaus2/util/DynamicLoading.cpp' || echo './'`libmaus2/util/DynamicLoading.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/DynamicLoading.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-DynamicLoading.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-GetFileSize.lo `test -f 'libmaus2/util/GetFileSize.cpp' || echo './'`libmaus2/util/GetFileSize.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/ConsoleColor.cpp -o libmaus2/util/la-ConsoleColor.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/GetFileSize.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-GetFileSize.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-Histogram.lo `test -f 'libmaus2/util/Histogram.cpp' || echo './'`libmaus2/util/Histogram.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/Histogram.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-Histogram.o 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-fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/HistogramSet.cpp -o libmaus2/util/la-HistogramSet.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-IncreasingList.lo `test -f 'libmaus2/util/IncreasingList.cpp' || echo './'`libmaus2/util/IncreasingList.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/IncreasingList.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-IncreasingList.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-IntervalTree.lo `test -f 'libmaus2/util/IntervalTree.cpp' || echo './'`libmaus2/util/IntervalTree.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/IntervalTree.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-IntervalTree.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-GenericIntervalTree.lo `test -f 'libmaus2/util/GenericIntervalTree.cpp' || echo './'`libmaus2/util/GenericIntervalTree.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/GenericIntervalTree.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-GenericIntervalTree.o In file included from libmaus2/util/IntervalTree.cpp:20: In file included from ./libmaus2/util/IntervalTree.hpp:25: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/IncreasingList.cpp -o libmaus2/util/la-IncreasingList.o >/dev/null 2>&1 1 warning generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/IntervalTree.cpp -o libmaus2/util/la-IntervalTree.o >/dev/null 2>&1 In file included from libmaus2/util/GenericIntervalTree.cpp:20: In file included from ./libmaus2/util/GenericIntervalTree.hpp:23: In file included from ./libmaus2/util/IntervalTree.hpp:25: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ 1 warning generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/GenericIntervalTree.cpp -o libmaus2/util/la-GenericIntervalTree.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-LookupIntervalTree.lo `test -f 'libmaus2/util/LookupIntervalTree.cpp' || echo './'`libmaus2/util/LookupIntervalTree.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/LookupIntervalTree.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-LookupIntervalTree.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/digest/la-md5_interface.lo `test -f 'libmaus2/digest/md5_interface.cpp' || echo './'`libmaus2/digest/md5_interface.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/digest/md5_interface.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-md5_interface.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/GetFileSize.cpp -o libmaus2/util/la-GetFileSize.o >/dev/null 2>&1 In file included from libmaus2/util/LookupIntervalTree.cpp:20: In file included from ./libmaus2/util/LookupIntervalTree.hpp:22: In file included from ./libmaus2/util/IntervalTree.hpp:25: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-MemUsage.lo `test -f 'libmaus2/util/MemUsage.cpp' || echo './'`libmaus2/util/MemUsage.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/digest/md5_interface.cpp -o libmaus2/digest/la-md5_interface.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/MemUsage.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-MemUsage.o 1 warning generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/LookupIntervalTree.cpp -o libmaus2/util/la-LookupIntervalTree.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-nstat.lo `test -f 'libmaus2/util/nstat.cpp' || echo './'`libmaus2/util/nstat.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/nstat.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-nstat.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/MemUsage.cpp -o libmaus2/util/la-MemUsage.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat 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libmaus2/util/la-nstat.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-StringSerialisation.lo `test -f 'libmaus2/util/StringSerialisation.cpp' || echo './'`libmaus2/util/StringSerialisation.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/StringSerialisation.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-StringSerialisation.o /bin/bash 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libmaus2/bambam/BamDefaultAdapters.cpp -o libmaus2/bambam/la-BamDefaultAdapters.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/DuplicationMetrics.cpp -o libmaus2/bambam/la-DuplicationMetrics.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bambam/la-BamRange.lo `test -f 'libmaus2/bambam/BamRange.cpp' || echo './'`libmaus2/bambam/BamRange.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/BamRange.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamRange.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bambam/la-BamIndexBinChunk.lo `test -f 'libmaus2/bambam/BamIndexBinChunk.cpp' || echo './'`libmaus2/bambam/BamIndexBinChunk.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/BamIndexBinChunk.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamIndexBinChunk.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/BamIndexBinChunk.cpp -o libmaus2/bambam/la-BamIndexBinChunk.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bambam/la-BamIndexLinearChunk.lo `test -f 'libmaus2/bambam/BamIndexLinearChunk.cpp' || echo './'`libmaus2/bambam/BamIndexLinearChunk.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/BamIndexLinearChunk.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamIndexLinearChunk.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/huffman/la-HuffmanTree.lo `test -f 'libmaus2/huffman/HuffmanTree.cpp' || echo './'`libmaus2/huffman/HuffmanTree.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/huffman/HuffmanTree.cpp -fPIC -DPIC -o libmaus2/huffman/.libs/la-HuffmanTree.o In file included from libmaus2/bambam/BamRange.cpp:20: In file included from ./libmaus2/bambam/BamRange.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27: In file included from ./libmaus2/bambam/BamAuxFilterVector.hpp:22: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/BamIndexLinearChunk.cpp -o libmaus2/bambam/la-BamIndexLinearChunk.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bambam/la-BamAlignmentDecoderInfo.lo `test -f 'libmaus2/bambam/BamAlignmentDecoderInfo.cpp' || echo './'`libmaus2/bambam/BamAlignmentDecoderInfo.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/BamAlignmentDecoderInfo.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamAlignmentDecoderInfo.o In file included from libmaus2/huffman/HuffmanTree.cpp:19: In file included from ./libmaus2/huffman/HuffmanTree.hpp:25: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from libmaus2/bambam/BamRange.cpp:20: In file included from ./libmaus2/bambam/BamRange.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ 1 warning generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/huffman/HuffmanTree.cpp -o libmaus2/huffman/la-HuffmanTree.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/BamAlignmentDecoderInfo.cpp -o libmaus2/bambam/la-BamAlignmentDecoderInfo.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lz/la-Lz4Base.lo `test -f 'libmaus2/lz/Lz4Base.cpp' || echo './'`libmaus2/lz/Lz4Base.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lz/Lz4Base.cpp -fPIC -DPIC -o libmaus2/lz/.libs/la-Lz4Base.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lz/la-Lz4Compress.lo `test -f 'libmaus2/lz/Lz4Compress.cpp' || echo './'`libmaus2/lz/Lz4Compress.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lz/Lz4Compress.cpp -fPIC -DPIC -o libmaus2/lz/.libs/la-Lz4Compress.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lz/Lz4Base.cpp -o libmaus2/lz/la-Lz4Base.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lz/la-Lz4DecoderBuffer.lo `test -f 'libmaus2/lz/Lz4DecoderBuffer.cpp' || echo './'`libmaus2/lz/Lz4DecoderBuffer.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lz/Lz4DecoderBuffer.cpp -fPIC -DPIC -o libmaus2/lz/.libs/la-Lz4DecoderBuffer.o /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -fopenmp -c -o libmaus2/lz/la-lz4.lo `test -f 'libmaus2/lz/lz4.c' || echo './'`libmaus2/lz/lz4.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -fopenmp -c libmaus2/lz/lz4.c -fPIC -DPIC -o libmaus2/lz/.libs/la-lz4.o 3 warnings generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/BamRange.cpp -o libmaus2/bambam/la-BamRange.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -fopenmp -c libmaus2/lz/lz4.c -o libmaus2/lz/la-lz4.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lz/Lz4DecoderBuffer.cpp -o libmaus2/lz/la-Lz4DecoderBuffer.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lz/Lz4Compress.cpp -o libmaus2/lz/la-Lz4Compress.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/fm/la-BidirectionalIndexInterval.lo `test -f 'libmaus2/fm/BidirectionalIndexInterval.cpp' || echo './'`libmaus2/fm/BidirectionalIndexInterval.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fm/BidirectionalIndexInterval.cpp -fPIC -DPIC -o libmaus2/fm/.libs/la-BidirectionalIndexInterval.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 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'./'`libmaus2/fastx/FastABgzfIndex.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/FastABgzfIndex.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-FastABgzfIndex.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/fastx/la-FastAIndexEntry.lo `test -f 'libmaus2/fastx/FastAIndexEntry.cpp' || echo './'`libmaus2/fastx/FastAIndexEntry.cpp libtool: compile: g++ -DHAVE_CONFIG_H 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-Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/fastx/la-FastAIndex.lo `test -f 'libmaus2/fastx/FastAIndex.cpp' || echo './'`libmaus2/fastx/FastAIndex.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/FastAIndex.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-FastAIndex.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/la-LocalBaseConstants.lo `test -f 'libmaus2/lcs/LocalBaseConstants.cpp' || echo './'`libmaus2/lcs/LocalBaseConstants.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/LocalBaseConstants.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-LocalBaseConstants.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/LocalBaseConstants.cpp -o libmaus2/lcs/la-LocalBaseConstants.o >/dev/null 2>&1 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--mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bambam/la-BamHeaderParserStateBase.lo `test -f 'libmaus2/bambam/BamHeaderParserStateBase.cpp' || echo './'`libmaus2/bambam/BamHeaderParserStateBase.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/BamHeaderParserStateBase.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamHeaderParserStateBase.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/LocalEditDistanceResult.cpp -o libmaus2/lcs/la-LocalEditDistanceResult.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bambam/la-GeneFlatFile.lo `test -f 'libmaus2/bambam/GeneFlatFile.cpp' || echo './'`libmaus2/bambam/GeneFlatFile.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/GeneFlatFile.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-GeneFlatFile.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bambam/la-GeneFlatFileEntry.lo `test -f 'libmaus2/bambam/GeneFlatFileEntry.cpp' || echo './'`libmaus2/bambam/GeneFlatFileEntry.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/GeneFlatFileEntry.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-GeneFlatFileEntry.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/GeneFlatFileEntry.cpp -o libmaus2/bambam/la-GeneFlatFileEntry.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/FastAIndex.cpp -o libmaus2/fastx/la-FastAIndex.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bambam/la-BamStreamingMarkDuplicatesSupport.lo `test -f 'libmaus2/bambam/BamStreamingMarkDuplicatesSupport.cpp' || echo './'`libmaus2/bambam/BamStreamingMarkDuplicatesSupport.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/BamStreamingMarkDuplicatesSupport.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamStreamingMarkDuplicatesSupport.o In file included from libmaus2/bambam/BamStreamingMarkDuplicatesSupport.cpp:19: In file included from ./libmaus2/bambam/BamStreamingMarkDuplicatesSupport.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27: In file included from ./libmaus2/bambam/BamAuxFilterVector.hpp:22: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/GeneFlatFile.cpp -o libmaus2/bambam/la-GeneFlatFile.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bambam/la-SamInfoBase.lo `test -f 'libmaus2/bambam/SamInfoBase.cpp' || echo './'`libmaus2/bambam/SamInfoBase.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/SamInfoBase.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-SamInfoBase.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/BamHeaderParserStateBase.cpp -o libmaus2/bambam/la-BamHeaderParserStateBase.o >/dev/null 2>&1 In file included from libmaus2/bambam/BamStreamingMarkDuplicatesSupport.cpp:19: In file included from ./libmaus2/bambam/BamStreamingMarkDuplicatesSupport.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ In file included from libmaus2/bambam/BamStreamingMarkDuplicatesSupport.cpp:19: In file included from ./libmaus2/bambam/BamStreamingMarkDuplicatesSupport.hpp:23: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:16: warning: variable 'ln' set but not used [-Wunused-but-set-variable] uint64_t ln = 0; ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/SamInfoBase.cpp -o libmaus2/bambam/la-SamInfoBase.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/digest/la-SHA1.lo `test -f 'libmaus2/digest/SHA1.cpp' || echo './'`libmaus2/digest/SHA1.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/digest/SHA1.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-SHA1.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/digest/la-SHA2_224.lo `test -f 'libmaus2/digest/SHA2_224.cpp' || echo './'`libmaus2/digest/SHA2_224.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/digest/SHA2_224.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-SHA2_224.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/digest/SHA1.cpp -o libmaus2/digest/la-SHA1.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/digest/SHA2_224.cpp -o libmaus2/digest/la-SHA2_224.o >/dev/null 2>&1 4 warnings generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/BamStreamingMarkDuplicatesSupport.cpp -o libmaus2/bambam/la-BamStreamingMarkDuplicatesSupport.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/digest/la-SHA2_256.lo `test -f 'libmaus2/digest/SHA2_256.cpp' || echo './'`libmaus2/digest/SHA2_256.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/digest/SHA2_256.cpp -fPIC -DPIC -o 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-I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/digest/la-SHA2_512.lo `test -f 'libmaus2/digest/SHA2_512.cpp' || echo './'`libmaus2/digest/SHA2_512.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/digest/SHA2_512.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-SHA2_512.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/digest/SHA2_256.cpp -o libmaus2/digest/la-SHA2_256.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/digest/SHA2_384.cpp -o libmaus2/digest/la-SHA2_384.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c 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--mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/digest/la-CRC32C_Core.lo `test -f 'libmaus2/digest/CRC32C_Core.cpp' || echo './'`libmaus2/digest/CRC32C_Core.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/digest/CRC32C_Core.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-CRC32C_Core.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/digest/la-CRC32C.lo `test -f 'libmaus2/digest/CRC32C.cpp' || echo './'`libmaus2/digest/CRC32C.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/digest/CRC32C.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-CRC32C.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 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-Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bambam/parallel/la-RefIdInterval.lo `test -f 'libmaus2/bambam/parallel/RefIdInterval.cpp' || echo './'`libmaus2/bambam/parallel/RefIdInterval.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/parallel/RefIdInterval.cpp -fPIC -DPIC -o libmaus2/bambam/parallel/.libs/la-RefIdInterval.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/parallel/RefIdInterval.cpp -o libmaus2/bambam/parallel/la-RefIdInterval.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/fastx/la-RefPathToken.lo `test -f 'libmaus2/fastx/RefPathToken.cpp' || echo './'`libmaus2/fastx/RefPathToken.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/RefPathToken.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-RefPathToken.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/fastx/la-RefPathTokenVector.lo `test -f 'libmaus2/fastx/RefPathTokenVector.cpp' || echo './'`libmaus2/fastx/RefPathTokenVector.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/RefPathTokenVector.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-RefPathTokenVector.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/la-AlignmentStatistics.lo `test -f 'libmaus2/lcs/AlignmentStatistics.cpp' || echo './'`libmaus2/lcs/AlignmentStatistics.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/AlignmentStatistics.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-AlignmentStatistics.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/RefPathToken.cpp -o libmaus2/fastx/la-RefPathToken.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/RefPathTokenVector.cpp -o libmaus2/fastx/la-RefPathTokenVector.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/fastx/la-SingleWordDNABitBuffer.lo `test -f 'libmaus2/fastx/SingleWordDNABitBuffer.cpp' || echo './'`libmaus2/fastx/SingleWordDNABitBuffer.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/SingleWordDNABitBuffer.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-SingleWordDNABitBuffer.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-LongestIncreasingSubsequenceExtendedResult.lo `test -f 'libmaus2/util/LongestIncreasingSubsequenceExtendedResult.cpp' || echo './'`libmaus2/util/LongestIncreasingSubsequenceExtendedResult.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/LongestIncreasingSubsequenceExtendedResult.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-LongestIncreasingSubsequenceExtendedResult.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/la-AlignerFactory.lo `test -f 'libmaus2/lcs/AlignerFactory.cpp' || echo './'`libmaus2/lcs/AlignerFactory.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/AlignerFactory.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-AlignerFactory.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/AlignmentStatistics.cpp -o libmaus2/lcs/la-AlignmentStatistics.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/SingleWordDNABitBuffer.cpp -o libmaus2/fastx/la-SingleWordDNABitBuffer.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/LongestIncreasingSubsequenceExtendedResult.cpp -o libmaus2/util/la-LongestIncreasingSubsequenceExtendedResult.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/la-BandedAlignerFactory.lo `test -f 'libmaus2/lcs/BandedAlignerFactory.cpp' || echo './'`libmaus2/lcs/BandedAlignerFactory.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/BandedAlignerFactory.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-BandedAlignerFactory.o In file included from libmaus2/lcs/AlignerFactory.cpp:19: In file included from ./libmaus2/lcs/AlignerFactory.hpp:21: In file included from ./libmaus2/lcs/Aligner.hpp:21: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/dazzler/align/la-TraceBlock.lo `test -f 'libmaus2/dazzler/align/TraceBlock.cpp' || echo './'`libmaus2/dazzler/align/TraceBlock.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/TraceBlock.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-TraceBlock.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/dazzler/align/la-ApproximateRun.lo `test -f 'libmaus2/dazzler/align/ApproximateRun.cpp' || echo './'`libmaus2/dazzler/align/ApproximateRun.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/ApproximateRun.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-ApproximateRun.o In file included from libmaus2/lcs/BandedAlignerFactory.cpp:19: In file included from ./libmaus2/lcs/BandedAlignerFactory.hpp:21: In file included from ./libmaus2/lcs/BandedAligner.hpp:21: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/TraceBlock.cpp -o libmaus2/dazzler/align/la-TraceBlock.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/ApproximateRun.cpp -o libmaus2/dazzler/align/la-ApproximateRun.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/suffixsort/la-BwtMergeBlockSortRequest.lo `test -f 'libmaus2/suffixsort/BwtMergeBlockSortRequest.cpp' || echo './'`libmaus2/suffixsort/BwtMergeBlockSortRequest.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/BwtMergeBlockSortRequest.cpp -fPIC -DPIC -o libmaus2/suffixsort/.libs/la-BwtMergeBlockSortRequest.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/dazzler/align/la-OverlapMeta.lo `test -f 'libmaus2/dazzler/align/OverlapMeta.cpp' || echo './'`libmaus2/dazzler/align/OverlapMeta.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/OverlapMeta.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-OverlapMeta.o 2 warnings generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/AlignerFactory.cpp -o libmaus2/lcs/la-AlignerFactory.o >/dev/null 2>&1 2 warnings generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/BandedAlignerFactory.cpp -o libmaus2/lcs/la-BandedAlignerFactory.o >/dev/null 2>&1 In file included from libmaus2/suffixsort/BwtMergeBlockSortRequest.cpp:19: In file included from ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:23: In file included from ./libmaus2/huffman/HuffmanTree.hpp:25: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from libmaus2/dazzler/align/OverlapMeta.cpp:18: In file included from ./libmaus2/dazzler/align/OverlapMeta.hpp:21: In file included from ./libmaus2/dazzler/align/Overlap.hpp:22: In file included from ./libmaus2/lcs/Aligner.hpp:21: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ 2 warnings generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/OverlapMeta.cpp -o libmaus2/dazzler/align/la-OverlapMeta.o >/dev/null 2>&1 In file included from libmaus2/suffixsort/BwtMergeBlockSortRequest.cpp:19: In file included from ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:38: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:334:20: warning: variable 'l_numsyms0' set but not used [-Wunused-but-set-variable] uint64_t l_numsyms0 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:339:20: warning: variable 'r_numsyms1' set but not used [-Wunused-but-set-variable] uint64_t r_numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:219:17: warning: variable 'numsyms1' set but not used [-Wunused-but-set-variable] uint64_t numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:20: warning: variable 'l_numsyms0' set but not used [-Wunused-but-set-variable] uint64_t l_numsyms0 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:20: warning: variable 'r_numsyms1' set but not used [-Wunused-but-set-variable] uint64_t r_numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:17: warning: variable 'numsyms1' set but not used [-Wunused-but-set-variable] uint64_t numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:20: warning: variable 'l_numsyms0' set but not used [-Wunused-but-set-variable] uint64_t l_numsyms0 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:20: warning: variable 'r_numsyms1' set but not used [-Wunused-but-set-variable] uint64_t r_numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:17: warning: variable 'numsyms1' set but not used [-Wunused-but-set-variable] uint64_t numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:20: warning: variable 'l_numsyms0' set but not used [-Wunused-but-set-variable] uint64_t l_numsyms0 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:20: warning: variable 'r_numsyms1' set but not used [-Wunused-but-set-variable] uint64_t r_numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:17: warning: variable 'numsyms1' set but not used [-Wunused-but-set-variable] uint64_t numsyms1 = 0; ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/dazzler/align/la-Tandem.lo `test -f 'libmaus2/dazzler/align/Tandem.cpp' || echo './'`libmaus2/dazzler/align/Tandem.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/Tandem.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-Tandem.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/dazzler/align/la-TandemVector.lo `test -f 'libmaus2/dazzler/align/TandemVector.cpp' || echo './'`libmaus2/dazzler/align/TandemVector.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/TandemVector.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-TandemVector.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/math/la-GmpInteger.lo `test -f 'libmaus2/math/GmpInteger.cpp' || echo './'`libmaus2/math/GmpInteger.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/math/GmpInteger.cpp -fPIC -DPIC -o libmaus2/math/.libs/la-GmpInteger.o In file included from libmaus2/dazzler/align/Tandem.cpp:19: In file included from ./libmaus2/dazzler/align/Tandem.hpp:21: In file included from ./libmaus2/dazzler/align/OverlapMeta.hpp:21: In file included from ./libmaus2/dazzler/align/Overlap.hpp:22: In file included from ./libmaus2/lcs/Aligner.hpp:21: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ In file included from libmaus2/dazzler/align/TandemVector.cpp:18: In file included from ./libmaus2/dazzler/align/TandemVector.hpp:21: In file included from ./libmaus2/dazzler/align/Tandem.hpp:21: In file included from ./libmaus2/dazzler/align/OverlapMeta.hpp:21: In file included from ./libmaus2/dazzler/align/Overlap.hpp:22: In file included from ./libmaus2/lcs/Aligner.hpp:21: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/math/GmpInteger.cpp -o libmaus2/math/la-GmpInteger.o >/dev/null 2>&1 13 warnings generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/BwtMergeBlockSortRequest.cpp -o libmaus2/suffixsort/la-BwtMergeBlockSortRequest.o >/dev/null 2>&1 2 warnings generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/Tandem.cpp -o libmaus2/dazzler/align/la-Tandem.o >/dev/null 2>&1 2 warnings generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/TandemVector.cpp -o libmaus2/dazzler/align/la-TandemVector.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/math/la-GmpFloat.lo `test -f 'libmaus2/math/GmpFloat.cpp' || echo './'`libmaus2/math/GmpFloat.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/math/GmpFloat.cpp -fPIC -DPIC -o libmaus2/math/.libs/la-GmpFloat.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/dazzler/align/la-TracePoint.lo `test -f 'libmaus2/dazzler/align/TracePoint.cpp' || echo './'`libmaus2/dazzler/align/TracePoint.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/TracePoint.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-TracePoint.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/math/GmpFloat.cpp -o libmaus2/math/la-GmpFloat.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/TracePoint.cpp -o libmaus2/dazzler/align/la-TracePoint.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lz/la-XzDecoder.lo `test -f 'libmaus2/lz/XzDecoder.cpp' || echo './'`libmaus2/lz/XzDecoder.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lz/XzDecoder.cpp -fPIC -DPIC -o libmaus2/lz/.libs/la-XzDecoder.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-ArgParser.lo `test -f 'libmaus2/util/ArgParser.cpp' || echo './'`libmaus2/util/ArgParser.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/ArgParser.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-ArgParser.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/fastx/la-DNAIndexMetaDataSequence.lo `test -f 'libmaus2/fastx/DNAIndexMetaDataSequence.cpp' || echo './'`libmaus2/fastx/DNAIndexMetaDataSequence.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaDataSequence.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-DNAIndexMetaDataSequence.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lz/XzDecoder.cpp -o libmaus2/lz/la-XzDecoder.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaDataSequence.cpp -o libmaus2/fastx/la-DNAIndexMetaDataSequence.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/ArgParser.cpp -o libmaus2/util/la-ArgParser.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/fastx/la-DNAIndexMetaData.lo `test -f 'libmaus2/fastx/DNAIndexMetaData.cpp' || echo './'`libmaus2/fastx/DNAIndexMetaData.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaData.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-DNAIndexMetaData.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bambam/la-PileVectorElement.lo `test -f 'libmaus2/bambam/PileVectorElement.cpp' || echo './'`libmaus2/bambam/PileVectorElement.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/PileVectorElement.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-PileVectorElement.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 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-std=c++17 -pthread -fopenmp -c libmaus2/bambam/PileVectorElement.cpp -o libmaus2/bambam/la-PileVectorElement.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaData.cpp -o libmaus2/fastx/la-DNAIndexMetaData.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/PileQualityVectorElement.cpp -o libmaus2/bambam/la-PileQualityVectorElement.o >/dev/null 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--tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/fastx/la-DNAIndexMetaDataBigBandBiDir.lo `test -f 'libmaus2/fastx/DNAIndexMetaDataBigBandBiDir.cpp' || echo './'`libmaus2/fastx/DNAIndexMetaDataBigBandBiDir.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaDataBigBandBiDir.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-DNAIndexMetaDataBigBandBiDir.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/digest/SHA3_256.cpp -o libmaus2/digest/la-SHA3_256.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/rank/la-DNARankBiDirRange.lo `test -f 'libmaus2/rank/DNARankBiDirRange.cpp' || echo './'`libmaus2/rank/DNARankBiDirRange.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/rank/DNARankBiDirRange.cpp -fPIC -DPIC -o libmaus2/rank/.libs/la-DNARankBiDirRange.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/rank/DNARankBiDirRange.cpp -o libmaus2/rank/la-DNARankBiDirRange.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaDataBigBand.cpp -o libmaus2/fastx/la-DNAIndexMetaDataBigBand.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/la-NNPTraceElement.lo `test -f 'libmaus2/lcs/NNPTraceElement.cpp' || echo './'`libmaus2/lcs/NNPTraceElement.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/NNPTraceElement.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-NNPTraceElement.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaDataBigBandBiDir.cpp -o libmaus2/fastx/la-DNAIndexMetaDataBigBandBiDir.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/la-NNPTraceContainer.lo `test -f 'libmaus2/lcs/NNPTraceContainer.cpp' || echo './'`libmaus2/lcs/NNPTraceContainer.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/NNPTraceContainer.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-NNPTraceContainer.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/NNPTraceElement.cpp -o libmaus2/lcs/la-NNPTraceElement.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/la-NNPAlignResult.lo `test -f 'libmaus2/lcs/NNPAlignResult.cpp' || echo './'`libmaus2/lcs/NNPAlignResult.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/fastx/la-FastAToCompact4BigBand.lo `test -f 'libmaus2/fastx/FastAToCompact4BigBand.cpp' || echo './'`libmaus2/fastx/FastAToCompact4BigBand.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/NNPAlignResult.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-NNPAlignResult.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/FastAToCompact4BigBand.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-FastAToCompact4BigBand.o In file included from libmaus2/lcs/NNPTraceContainer.cpp:18: In file included from ./libmaus2/lcs/NNPTraceContainer.hpp:23: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortResult.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortResult.o 2 warnings generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/NNPTraceContainer.cpp -o libmaus2/lcs/la-NNPTraceContainer.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/NNPAlignResult.cpp -o libmaus2/lcs/la-NNPAlignResult.o >/dev/null 2>&1 In file included from libmaus2/fastx/FastAToCompact4BigBand.cpp:23: In file included from ./libmaus2/fastx/StreamFastAReader.hpp:23: In file included from ./libmaus2/fastx/FastAReader.hpp:31: In file included from ./libmaus2/fastx/FastInterval.hpp:25: In file included from ./libmaus2/util/IntervalTree.hpp:25: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:22: In file included from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:26: In file included from ./libmaus2/huffman/HuffmanTree.hpp:25: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lz/la-ZlibInterface.lo `test -f 'libmaus2/lz/ZlibInterface.cpp' || echo './'`libmaus2/lz/ZlibInterface.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lz/ZlibInterface.cpp -fPIC -DPIC -o libmaus2/lz/.libs/la-ZlibInterface.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lz/ZlibInterface.cpp -o libmaus2/lz/la-ZlibInterface.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtSelectSSA.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtSelectSSA.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/aio/la-FileRemoval.lo `test -f 'libmaus2/aio/FileRemoval.cpp' || echo './'`libmaus2/aio/FileRemoval.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/FileRemoval.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-FileRemoval.o In file included from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:19: In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:334:20: warning: variable 'l_numsyms0' set but not used [-Wunused-but-set-variable] uint64_t l_numsyms0 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:339:20: warning: variable 'r_numsyms1' set but not used [-Wunused-but-set-variable] uint64_t r_numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:219:17: warning: variable 'numsyms1' set but not used [-Wunused-but-set-variable] uint64_t numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:20: warning: variable 'l_numsyms0' set but not used [-Wunused-but-set-variable] uint64_t l_numsyms0 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:20: warning: variable 'r_numsyms1' set but not used [-Wunused-but-set-variable] uint64_t r_numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:17: warning: variable 'numsyms1' set but not used [-Wunused-but-set-variable] uint64_t numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:20: warning: variable 'l_numsyms0' set but not used [-Wunused-but-set-variable] uint64_t l_numsyms0 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:20: warning: variable 'r_numsyms1' set but not used [-Wunused-but-set-variable] uint64_t r_numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:17: warning: variable 'numsyms1' set but not used [-Wunused-but-set-variable] uint64_t numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:20: warning: variable 'l_numsyms0' set but not used [-Wunused-but-set-variable] uint64_t l_numsyms0 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:20: warning: variable 'r_numsyms1' set but not used [-Wunused-but-set-variable] uint64_t r_numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:17: warning: variable 'numsyms1' set but not used [-Wunused-but-set-variable] uint64_t numsyms1 = 0; ^ 1 warning generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/FastAToCompact4BigBand.cpp -o libmaus2/fastx/la-FastAToCompact4BigBand.o >/dev/null 2>&1 In file included from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:21: In file included from ./libmaus2/sorting/PairFileSorting.hpp:27: In file included from ./libmaus2/aio/FileFragment.hpp:27: In file included from ./libmaus2/util/IntervalTree.hpp:25: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:639:12: warning: variable 'bc' set but not used [-Wunused-but-set-variable] uint64_t bc = 0; ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/rank/la-DNARankMEM.lo `test -f 'libmaus2/rank/DNARankMEM.cpp' || echo './'`libmaus2/rank/DNARankMEM.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/rank/DNARankMEM.cpp -fPIC -DPIC -o libmaus2/rank/.libs/la-DNARankMEM.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/rank/DNARankMEM.cpp -o libmaus2/rank/la-DNARankMEM.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/la-ChainAddQueueElement.lo `test -f 'libmaus2/lcs/ChainAddQueueElement.cpp' || echo './'`libmaus2/lcs/ChainAddQueueElement.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/ChainAddQueueElement.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-ChainAddQueueElement.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/ChainAddQueueElement.cpp -o libmaus2/lcs/la-ChainAddQueueElement.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/FileRemoval.cpp -o libmaus2/aio/la-FileRemoval.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/la-Chain.lo `test -f 'libmaus2/lcs/Chain.cpp' || echo './'`libmaus2/lcs/Chain.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/Chain.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-Chain.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/Chain.cpp -o libmaus2/lcs/la-Chain.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/la-ChainNode.lo `test -f 'libmaus2/lcs/ChainNode.cpp' || echo './'`libmaus2/lcs/ChainNode.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/ChainNode.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-ChainNode.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/ChainNode.cpp -o libmaus2/lcs/la-ChainNode.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/la-ChainNodeInfo.lo `test -f 'libmaus2/lcs/ChainNodeInfo.cpp' || echo './'`libmaus2/lcs/ChainNodeInfo.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/ChainNodeInfo.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-ChainNodeInfo.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/ChainNodeInfo.cpp -o libmaus2/lcs/la-ChainNodeInfo.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/la-ChainRemoveQueueElement.lo `test -f 'libmaus2/lcs/ChainRemoveQueueElement.cpp' || echo './'`libmaus2/lcs/ChainRemoveQueueElement.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/ChainRemoveQueueElement.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-ChainRemoveQueueElement.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/ChainRemoveQueueElement.cpp -o libmaus2/lcs/la-ChainRemoveQueueElement.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/la-ChainSplayTreeNode.lo `test -f 'libmaus2/lcs/ChainSplayTreeNode.cpp' || echo './'`libmaus2/lcs/ChainSplayTreeNode.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/ChainSplayTreeNode.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-ChainSplayTreeNode.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/ChainSplayTreeNode.cpp -o libmaus2/lcs/la-ChainSplayTreeNode.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/aio/la-PosixFdOutputStreamFactory.lo `test -f 'libmaus2/aio/PosixFdOutputStreamFactory.cpp' || echo './'`libmaus2/aio/PosixFdOutputStreamFactory.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/PosixFdOutputStreamFactory.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-PosixFdOutputStreamFactory.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/dazzler/align/la-OverlapHeader.lo `test -f 'libmaus2/dazzler/align/OverlapHeader.cpp' || echo './'`libmaus2/dazzler/align/OverlapHeader.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/OverlapHeader.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-OverlapHeader.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/PosixFdOutputStreamFactory.cpp -o libmaus2/aio/la-PosixFdOutputStreamFactory.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/OverlapHeader.cpp -o libmaus2/dazzler/align/la-OverlapHeader.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bambam/la-BamAlignment.lo `test -f 'libmaus2/bambam/BamAlignment.cpp' || echo './'`libmaus2/bambam/BamAlignment.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/BamAlignment.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamAlignment.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeInput.lo `test -f 'libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-MergeStrategyMergeInput.o In file included from libmaus2/bambam/BamAlignment.cpp:18: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27: In file included from ./libmaus2/bambam/BamAuxFilterVector.hpp:22: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from libmaus2/bambam/BamAlignment.cpp:18: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ In file included from libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp:22: In file included from ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:22: In file included from ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:23: In file included from ./libmaus2/huffman/HuffmanTree.hpp:25: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp:22: In file included from ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:22: In file included from ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:38: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:334:20: warning: variable 'l_numsyms0' set but not used [-Wunused-but-set-variable] uint64_t l_numsyms0 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:339:20: warning: variable 'r_numsyms1' set but not used [-Wunused-but-set-variable] uint64_t r_numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:219:17: warning: variable 'numsyms1' set but not used [-Wunused-but-set-variable] uint64_t numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:20: warning: variable 'l_numsyms0' set but not used [-Wunused-but-set-variable] uint64_t l_numsyms0 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:20: warning: variable 'r_numsyms1' set but not used [-Wunused-but-set-variable] uint64_t r_numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:17: warning: variable 'numsyms1' set but not used [-Wunused-but-set-variable] uint64_t numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:20: warning: variable 'l_numsyms0' set but not used [-Wunused-but-set-variable] uint64_t l_numsyms0 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:20: warning: variable 'r_numsyms1' set but not used [-Wunused-but-set-variable] uint64_t r_numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:17: warning: variable 'numsyms1' set but not used [-Wunused-but-set-variable] uint64_t numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:20: warning: variable 'l_numsyms0' set but not used [-Wunused-but-set-variable] uint64_t l_numsyms0 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:20: warning: variable 'r_numsyms1' set but not used [-Wunused-but-set-variable] uint64_t r_numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:17: warning: variable 'numsyms1' set but not used [-Wunused-but-set-variable] uint64_t numsyms1 = 0; ^ 3 warnings generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/BamAlignment.cpp -o libmaus2/bambam/la-BamAlignment.o >/dev/null 2>&1 2 warnings generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtSelectSSA.o >/dev/null 2>&1 13 warnings generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp -o libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeInput.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/aio/la-InputOutputStreamInstance.lo `test -f 'libmaus2/aio/InputOutputStreamInstance.cpp' || echo './'`libmaus2/aio/InputOutputStreamInstance.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/InputOutputStreamInstance.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-InputOutputStreamInstance.o 13 warnings generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortResult.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/InputOutputStreamInstance.cpp -o libmaus2/aio/la-InputOutputStreamInstance.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/dazzler/align/la-OverlapInfo.lo `test -f 'libmaus2/dazzler/align/OverlapInfo.cpp' || echo './'`libmaus2/dazzler/align/OverlapInfo.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/OverlapInfo.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-OverlapInfo.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/OverlapInfo.cpp -o libmaus2/dazzler/align/la-OverlapInfo.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/dazzler/align/la-OverlapDataInterface.lo `test -f 'libmaus2/dazzler/align/OverlapDataInterface.cpp' || echo './'`libmaus2/dazzler/align/OverlapDataInterface.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/OverlapDataInterface.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-OverlapDataInterface.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-PathTools.lo `test -f 'libmaus2/util/PathTools.cpp' || echo './'`libmaus2/util/PathTools.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/PathTools.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-PathTools.o In file included from libmaus2/dazzler/align/OverlapDataInterface.cpp:18: In file included from ./libmaus2/dazzler/align/OverlapDataInterface.hpp:21: In file included from ./libmaus2/dazzler/align/OverlapData.hpp:23: In file included from ./libmaus2/dazzler/align/Overlap.hpp:22: In file included from ./libmaus2/lcs/Aligner.hpp:21: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/PathTools.cpp -o libmaus2/util/la-PathTools.o >/dev/null 2>&1 2 warnings generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/OverlapDataInterface.cpp -o libmaus2/dazzler/align/la-OverlapDataInterface.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/aio/la-OFStreamOutputStreamFactory.lo `test -f 'libmaus2/aio/OFStreamOutputStreamFactory.cpp' || echo './'`libmaus2/aio/OFStreamOutputStreamFactory.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/OFStreamOutputStreamFactory.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-OFStreamOutputStreamFactory.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/aio/la-PosixFdInput.lo `test -f 'libmaus2/aio/PosixFdInput.cpp' || echo './'`libmaus2/aio/PosixFdInput.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/PosixFdInput.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-PosixFdInput.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/OFStreamOutputStreamFactory.cpp -o libmaus2/aio/la-OFStreamOutputStreamFactory.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/PosixFdInput.cpp -o libmaus2/aio/la-PosixFdInput.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lz/la-BgzfDeflateHeaderFunctions.lo `test -f 'libmaus2/lz/BgzfDeflateHeaderFunctions.cpp' || echo './'`libmaus2/lz/BgzfDeflateHeaderFunctions.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lz/BgzfDeflateHeaderFunctions.cpp -fPIC -DPIC -o libmaus2/lz/.libs/la-BgzfDeflateHeaderFunctions.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lz/BgzfDeflateHeaderFunctions.cpp -o libmaus2/lz/la-BgzfDeflateHeaderFunctions.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lz/la-BgzfDeflateZStreamBase.lo `test -f 'libmaus2/lz/BgzfDeflateZStreamBase.cpp' || echo './'`libmaus2/lz/BgzfDeflateZStreamBase.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lz/BgzfDeflateZStreamBase.cpp -fPIC -DPIC -o libmaus2/lz/.libs/la-BgzfDeflateZStreamBase.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bambam/la-ChecksumsFactory.lo `test -f 'libmaus2/bambam/ChecksumsFactory.cpp' || echo './'`libmaus2/bambam/ChecksumsFactory.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/ChecksumsFactory.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-ChecksumsFactory.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lz/BgzfDeflateZStreamBase.cpp -o libmaus2/lz/la-BgzfDeflateZStreamBase.o >/dev/null 2>&1 In file included from libmaus2/bambam/ChecksumsFactory.cpp:20: In file included from ./libmaus2/bambam/ChecksumsFactory.hpp:22: In file included from ./libmaus2/bambam/ChecksumsInterface.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27: In file included from ./libmaus2/bambam/BamAuxFilterVector.hpp:22: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/aio/la-SecrecyInputStreamFactory.lo `test -f 'libmaus2/aio/SecrecyInputStreamFactory.cpp' || echo './'`libmaus2/aio/SecrecyInputStreamFactory.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/SecrecyInputStreamFactory.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-SecrecyInputStreamFactory.o In file included from libmaus2/bambam/ChecksumsFactory.cpp:20: In file included from ./libmaus2/bambam/ChecksumsFactory.hpp:22: In file included from ./libmaus2/bambam/ChecksumsInterface.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/aio/la-SecrecyOutputStreamFactory.lo `test -f 'libmaus2/aio/SecrecyOutputStreamFactory.cpp' || echo './'`libmaus2/aio/SecrecyOutputStreamFactory.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/SecrecyOutputStreamFactory.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-SecrecyOutputStreamFactory.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/SecrecyInputStreamFactory.cpp -o libmaus2/aio/la-SecrecyInputStreamFactory.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -fopenmp -c -o libmaus2/bambam/la-Scram.lo `test -f 'libmaus2/bambam/Scram.c' || echo './'`libmaus2/bambam/Scram.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -fopenmp -c libmaus2/bambam/Scram.c -fPIC -DPIC -o libmaus2/bambam/.libs/la-Scram.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -fopenmp -c libmaus2/bambam/Scram.c -o libmaus2/bambam/la-Scram.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bambam/parallel/la-ScramCramEncoding.lo `test -f 'libmaus2/bambam/parallel/ScramCramEncoding.cpp' || echo './'`libmaus2/bambam/parallel/ScramCramEncoding.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/parallel/ScramCramEncoding.cpp -fPIC -DPIC -o libmaus2/bambam/parallel/.libs/la-ScramCramEncoding.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/parallel/ScramCramEncoding.cpp -o libmaus2/bambam/parallel/la-ScramCramEncoding.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentConstants128.lo `test -f 'libmaus2/lcs/SimdX86GlobalAlignmentConstants128.cpp' || echo './'`libmaus2/lcs/SimdX86GlobalAlignmentConstants128.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentConstants128.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_128_la-SimdX86GlobalAlignmentConstants128.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentConstants128.cpp -o libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentConstants128.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_8.lo `test -f 'libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_8.cpp' || echo './'`libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_8.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_8.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_8.o In file included from libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_8.cpp:21: In file included from ./libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_8.hpp:26: In file included from ./libmaus2/lcs/SimdX86BandedGlobalAlignmentTemplate.hpp:32: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ 2 warnings generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_8.cpp -o libmaus2/lcs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_8.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/SecrecyOutputStreamFactory.cpp -o libmaus2/aio/la-SecrecyOutputStreamFactory.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_16.lo `test -f 'libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_16.cpp' || echo './'`libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_16.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_16.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_16.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentX128_8.lo `test -f 'libmaus2/lcs/SimdX86GlobalAlignmentX128_8.cpp' || echo './'`libmaus2/lcs/SimdX86GlobalAlignmentX128_8.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentX128_8.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_128_la-SimdX86GlobalAlignmentX128_8.o In file included from libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_16.cpp:21: In file included from ./libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_16.hpp:26: In file included from ./libmaus2/lcs/SimdX86BandedGlobalAlignmentTemplate.hpp:32: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ 2 warnings generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_16.cpp -o libmaus2/lcs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_16.o >/dev/null 2>&1 In file included from libmaus2/lcs/SimdX86GlobalAlignmentX128_8.cpp:21: In file included from ./libmaus2/lcs/SimdX86GlobalAlignmentX128_8.hpp:26: In file included from ./libmaus2/lcs/SimdX86GlobalAlignmentTemplate.hpp:32: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ 2 warnings generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentX128_8.cpp -o libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentX128_8.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentX128_16.lo `test -f 'libmaus2/lcs/SimdX86GlobalAlignmentX128_16.cpp' || echo './'`libmaus2/lcs/SimdX86GlobalAlignmentX128_16.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentX128_16.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_128_la-SimdX86GlobalAlignmentX128_16.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentConstants256.lo `test -f 'libmaus2/lcs/SimdX86GlobalAlignmentConstants256.cpp' || echo './'`libmaus2/lcs/SimdX86GlobalAlignmentConstants256.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentConstants256.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentConstants256.o In file included from libmaus2/lcs/SimdX86GlobalAlignmentX128_16.cpp:21: In file included from ./libmaus2/lcs/SimdX86GlobalAlignmentX128_16.hpp:26: In file included from ./libmaus2/lcs/SimdX86GlobalAlignmentTemplate.hpp:32: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentConstants256.cpp -o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentConstants256.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.lo `test -f 'libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8.cpp' || echo './'`libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.o 2 warnings generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentX128_16.cpp -o libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentX128_16.o >/dev/null 2>&1 3 warnings generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/ChecksumsFactory.cpp -o libmaus2/bambam/la-ChecksumsFactory.o >/dev/null 2>&1 In file included from libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8.cpp:21: In file included from ./libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8.hpp:26: In file included from ./libmaus2/lcs/SimdX86BandedGlobalAlignmentTemplate.hpp:32: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ 2 warnings generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8.cpp -o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.lo `test -f 'libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16.cpp' || echo './'`libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.lo `test -f 'libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16.cpp' || echo './'`libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.o In file included from libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16.cpp:21: In file included from ./libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16.hpp:26: In file included from ./libmaus2/lcs/SimdX86BandedGlobalAlignmentTemplate.hpp:32: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ In file included from libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16.cpp:21: In file included from ./libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16.hpp:26: In file included from ./libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreTemplate.hpp:32: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.lo `test -f 'libmaus2/lcs/SimdX86GlobalAlignmentY256_8.cpp' || echo './'`libmaus2/lcs/SimdX86GlobalAlignmentY256_8.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentY256_8.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.o 2 warnings generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16.cpp -o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.o >/dev/null 2>&1 2 warnings generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16.cpp -o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.o >/dev/null 2>&1 In file included from libmaus2/lcs/SimdX86GlobalAlignmentY256_8.cpp:21: In file included from ./libmaus2/lcs/SimdX86GlobalAlignmentY256_8.hpp:26: In file included from ./libmaus2/lcs/SimdX86GlobalAlignmentTemplate.hpp:32: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ 2 warnings generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentY256_8.cpp -o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.lo `test -f 'libmaus2/lcs/SimdX86GlobalAlignmentY256_16.cpp' || echo './'`libmaus2/lcs/SimdX86GlobalAlignmentY256_16.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentY256_16.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/simd_align_256_la-AlignmentOneAgainstManyAVX2.lo `test -f 'libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp' || echo './'`libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-AlignmentOneAgainstManyAVX2.o In file included from libmaus2/lcs/SimdX86GlobalAlignmentY256_16.cpp:21: In file included from ./libmaus2/lcs/SimdX86GlobalAlignmentY256_16.hpp:26: In file included from ./libmaus2/lcs/SimdX86GlobalAlignmentTemplate.hpp:32: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ In file included from libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp:20: In file included from ./libmaus2/lcs/NP.hpp:21: In file included from ./libmaus2/lcs/Aligner.hpp:21: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testThreadPoolRead-testThreadPoolRead.o `test -f 'test/testThreadPoolRead.cpp' || echo './'`test/testThreadPoolRead.cpp 2 warnings generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentY256_16.cpp -o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.o >/dev/null 2>&1 2 warnings generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp -o libmaus2/lcs/simd_align_256_la-AlignmentOneAgainstManyAVX2.o >/dev/null 2>&1 g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testThreadPoolBgzfRead-testThreadPoolBgzfRead.o `test -f 'test/testThreadPoolBgzfRead.cpp' || echo './'`test/testThreadPoolBgzfRead.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testThreadPoolBgzfDecompress-testThreadPoolBgzfDecompress.o `test -f 'test/testThreadPoolBgzfDecompress.cpp' || echo './'`test/testThreadPoolBgzfDecompress.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testThreadPoolBamParse-testThreadPoolBamParse.o `test -f 'test/testThreadPoolBamParse.cpp' || echo './'`test/testThreadPoolBamParse.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testThreadPoolCramEncode-testThreadPoolCramEncode.o `test -f 'test/testThreadPoolCramEncode.cpp' || echo './'`test/testThreadPoolCramEncode.cpp In file included from test/testThreadPoolCramEncode.cpp:25: In file included from ./libmaus2/fastx/FastAReader.hpp:31: In file included from ./libmaus2/fastx/FastInterval.hpp:25: In file included from ./libmaus2/util/IntervalTree.hpp:25: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testAIO-testAIO.o `test -f 'test/testAIO.cpp' || echo './'`test/testAIO.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbitbtree-testbitbtree.o `test -f 'test/testbitbtree.cpp' || echo './'`test/testbitbtree.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testBitIO-testBitIO.o `test -f 'test/testBitIO.cpp' || echo './'`test/testBitIO.cpp In file included from test/testBitIO.cpp:30: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbtree-testbtree.o `test -f 'test/testbtree.cpp' || echo './'`test/testbtree.cpp 1 warning generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testBWTDyn-testBWTDyn.o `test -f 'test/testBWTDyn.cpp' || echo './'`test/testBWTDyn.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testBWTHufDyn-testBWTHufDyn.o `test -f 'test/testBWTHufDyn.cpp' || echo './'`test/testBWTHufDyn.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testDivSufSort-testDivSufSort.o `test -f 'test/testDivSufSort.cpp' || echo './'`test/testDivSufSort.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testDNABitWords-testDNABitWords.o `test -f 'test/testDNABitWords.cpp' || echo './'`test/testDNABitWords.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testFastRead-testFastRead.o `test -f 'test/testFastRead.cpp' || echo './'`test/testFastRead.cpp In file included from test/testFastRead.cpp:23: In file included from ./libmaus2/fastx/FastAReader.hpp:31: In file included from ./libmaus2/fastx/FastInterval.hpp:25: In file included from ./libmaus2/util/IntervalTree.hpp:25: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testHuffman-testHuffman.o `test -f 'test/testHuffman.cpp' || echo './'`test/testHuffman.cpp 1 warning generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testIsa-testIsa.o `test -f 'test/testIsa.cpp' || echo './'`test/testIsa.cpp In file included from test/testHuffman.cpp:27: In file included from ./libmaus2/huffman/HuffmanTree.hpp:25: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ 1 warning generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testkmp-testkmp.o `test -f 'test/testkmp.cpp' || echo './'`test/testkmp.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testlz-testlz.o `test -f 'test/testlz.cpp' || echo './'`test/testlz.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testRank-testRank.o `test -f 'test/testRank.cpp' || echo './'`test/testRank.cpp In file included from test/testRank.cpp:35: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testToWaveletTreeBits-testToWaveletTreeBits.o `test -f 'test/testToWaveletTreeBits.cpp' || echo './'`test/testToWaveletTreeBits.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testWaveletExternal-testWaveletExternal.o `test -f 'test/testWaveletExternal.cpp' || echo './'`test/testWaveletExternal.cpp In file included from test/testWaveletExternal.cpp:28: In file included from ./libmaus2/wavelet/ImpExternalWaveletGeneratorCompactHuffman.hpp:33: In file included from ./libmaus2/huffman/HuffmanTree.hpp:25: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testTrie-testTrie.o `test -f 'test/testTrie.cpp' || echo './'`test/testTrie.cpp 1 warning generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbandedlcs-testbandedlcs.o `test -f 'test/testbandedlcs.cpp' || echo './'`test/testbandedlcs.cpp In file included from test/testbandedlcs.cpp:23: In file included from ./libmaus2/fastx/FastAReader.hpp:31: In file included from ./libmaus2/fastx/FastInterval.hpp:25: In file included from ./libmaus2/util/IntervalTree.hpp:25: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbamwriter-testbamwriter.o `test -f 'test/testbamwriter.cpp' || echo './'`test/testbamwriter.cpp In file included from test/testbamwriter.cpp:19: In file included from ./libmaus2/bambam/BamWriter.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27: In file included from ./libmaus2/bambam/BamAuxFilterVector.hpp:22: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ 1 warning generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testarraydecode-testarraydecode.o `test -f 'test/testarraydecode.cpp' || echo './'`test/testarraydecode.cpp 1 warning generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testsnappy-testsnappy.o `test -f 'test/testsnappy.cpp' || echo './'`test/testsnappy.cpp In file included from test/testbamwriter.cpp:19: In file included from ./libmaus2/bambam/BamWriter.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testsnappyconcat-testsnappyconcat.o `test -f 'test/testsnappyconcat.cpp' || echo './'`test/testsnappyconcat.cpp In file included from test/testbamwriter.cpp:22: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:16: warning: variable 'ln' set but not used [-Wunused-but-set-variable] uint64_t ln = 0; ^ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testgunzip-testgunzip.o `test -f 'test/testgunzip.cpp' || echo './'`test/testgunzip.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testhashcollisions-testhashcollisions.o `test -f 'test/testhashcollisions.cpp' || echo './'`test/testhashcollisions.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testsimplebloomcollisions-testsimplebloomcollisions.o `test -f 'test/testsimplebloomcollisions.cpp' || echo './'`test/testsimplebloomcollisions.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testsimplehash-testsimplehash.o `test -f 'test/testsimplehash.cpp' || echo './'`test/testsimplehash.cpp In file included from test/testsimplebloomcollisions.cpp:20: In file included from ./libmaus2/util/SimpleBloomFilter.hpp:25: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ 1 warning generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testsimplecountinghash-testsimplecountinghash.o `test -f 'test/testsimplecountinghash.cpp' || echo './'`test/testsimplecountinghash.cpp 1 warning generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testcachealignedalloc-testcachealignedalloc.o `test -f 'test/testcachealignedalloc.cpp' || echo './'`test/testcachealignedalloc.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testsyncfastreaderbase-testsyncfastreaderbase.o `test -f 'test/testsyncfastreaderbase.cpp' || echo './'`test/testsyncfastreaderbase.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testdl-testdl.o `test -f 'test/testdl.cpp' || echo './'`test/testdl.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testdifenc-testdifenc.o `test -f 'test/testdifenc.cpp' || echo './'`test/testdifenc.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbwtmergeinternal-testbwtmergeinternal.o `test -f 'test/testbwtmergeinternal.cpp' || echo './'`test/testbwtmergeinternal.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testfastarewrite-testfastarewrite.o `test -f 'test/testfastarewrite.cpp' || echo './'`test/testfastarewrite.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testfastarecode-testfastarecode.o `test -f 'test/testfastarecode.cpp' || echo './'`test/testfastarecode.cpp In file included from test/testfastarewrite.cpp:6: In file included from ./libmaus2/fastx/FastAReader.hpp:31: In file included from ./libmaus2/fastx/FastInterval.hpp:25: In file included from ./libmaus2/util/IntervalTree.hpp:25: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from test/testfastarecode.cpp:24: In file included from ./libmaus2/fastx/FastAReader.hpp:31: In file included from ./libmaus2/fastx/FastInterval.hpp:25: In file included from ./libmaus2/util/IntervalTree.hpp:25: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ 1 warning generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbamtofastq-testbamtofastq.o `test -f 'test/testbamtofastq.cpp' || echo './'`test/testbamtofastq.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbamrange-testbamrange.o `test -f 'test/testbamrange.cpp' || echo './'`test/testbamrange.cpp In file included from test/testbamtofastq.cpp:19: In file included from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentFilter.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27: In file included from ./libmaus2/bambam/BamAuxFilterVector.hpp:22: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ 1 warning generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbamdamage-testbamdamage.o `test -f 'test/testbamdamage.cpp' || echo './'`test/testbamdamage.cpp In file included from test/testbamrange.cpp:20: In file included from ./libmaus2/bambam/BamRangeDecoder.hpp:22: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27: In file included from ./libmaus2/bambam/BamAuxFilterVector.hpp:22: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ 4 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testgamma-testgamma.o `test -f 'test/testgamma.cpp' || echo './'`test/testgamma.cpp In file included from test/testbamtofastq.cpp:19: In file included from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentFilter.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ In file included from test/testbamdamage.cpp:3: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27: In file included from ./libmaus2/bambam/BamAuxFilterVector.hpp:22: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from test/testbamtofastq.cpp:19: In file included from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:23: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:16: warning: variable 'ln' set but not used [-Wunused-but-set-variable] uint64_t ln = 0; ^ In file included from test/testbamrange.cpp:20: In file included from ./libmaus2/bambam/BamRangeDecoder.hpp:22: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ In file included from test/testbamrange.cpp:20: In file included from ./libmaus2/bambam/BamRangeDecoder.hpp:22: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:16: warning: variable 'ln' set but not used [-Wunused-but-set-variable] uint64_t ln = 0; ^ In file included from test/testbamdamage.cpp:3: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ In file included from test/testbamdamage.cpp:3: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:16: warning: variable 'ln' set but not used [-Wunused-but-set-variable] uint64_t ln = 0; ^ In file included from test/testgamma.cpp:42: In file included from ./libmaus2/gamma/SparseGammaGapMerge.hpp:24: In file included from ./libmaus2/gamma/SparseGammaGapConcatDecoder.hpp:22: In file included from ./libmaus2/gamma/SparseGammaGapFileIndexMultiDecoder.hpp:22: In file included from ./libmaus2/gamma/SparseGammaGapFileIndexDecoder.hpp:24: In file included from ./libmaus2/util/GenericIntervalTree.hpp:23: In file included from ./libmaus2/util/IntervalTree.hpp:25: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ test/testbamdamage.cpp:19:12: warning: variable 'total' set but not used [-Wunused-but-set-variable] uint64_t total = 0; ^ In file included from test/testgamma.cpp:1899: ./libmaus2/gamma/GammaFlaggedIntervalEncoder.hpp:76:15: warning: variable 'vsum' set but not used [-Wunused-but-set-variable] uint64_t vsum = pa[0].to-pa[0].from; ^ 5 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testcompact-testcompact.o `test -f 'test/testcompact.cpp' || echo './'`test/testcompact.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbytetocompact-testbytetocompact.o `test -f 'test/testbytetocompact.cpp' || echo './'`test/testbytetocompact.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testscramtosam-testscramtosam.o `test -f 'test/testscramtosam.cpp' || echo './'`test/testscramtosam.cpp 4 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testpacdecode-testpacdecode.o `test -f 'test/testpacdecode.cpp' || echo './'`test/testpacdecode.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testutf8split-testutf8split.o `test -f 'test/testutf8split.cpp' || echo './'`test/testutf8split.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testcirchash-testcirchash.o `test -f 'test/testcirchash.cpp' || echo './'`test/testcirchash.cpp In file included from test/testcirchash.cpp:20: In file included from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentFilter.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27: In file included from ./libmaus2/bambam/BamAuxFilterVector.hpp:22: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from test/testutf8split.cpp:31: In file included from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:26: In file included from ./libmaus2/huffman/HuffmanTree.hpp:25: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from test/testcirchash.cpp:20: In file included from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentFilter.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ In file included from test/testutf8split.cpp:35: ./libmaus2/wavelet/Utf8ToImpHuffmanWaveletTree.hpp:310:20: warning: variable 'l_numsyms0' set but not used [-Wunused-but-set-variable] uint64_t l_numsyms0 = 0; ^ ./libmaus2/wavelet/Utf8ToImpHuffmanWaveletTree.hpp:315:20: warning: variable 'r_numsyms1' set but not used [-Wunused-but-set-variable] uint64_t r_numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpHuffmanWaveletTree.hpp:195:17: warning: variable 'numsyms1' set but not used [-Wunused-but-set-variable] uint64_t numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpHuffmanWaveletTree.hpp:825:20: warning: variable 'l_numsyms0' set but not used [-Wunused-but-set-variable] uint64_t l_numsyms0 = 0; ^ ./libmaus2/wavelet/Utf8ToImpHuffmanWaveletTree.hpp:830:20: warning: variable 'r_numsyms1' set but not used [-Wunused-but-set-variable] uint64_t r_numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpHuffmanWaveletTree.hpp:710:17: warning: variable 'numsyms1' set but not used [-Wunused-but-set-variable] uint64_t numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpHuffmanWaveletTree.hpp:1347:20: warning: variable 'l_numsyms0' set but not used [-Wunused-but-set-variable] uint64_t l_numsyms0 = 0; ^ ./libmaus2/wavelet/Utf8ToImpHuffmanWaveletTree.hpp:1352:20: warning: variable 'r_numsyms1' set but not used [-Wunused-but-set-variable] uint64_t r_numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpHuffmanWaveletTree.hpp:1232:17: warning: variable 'numsyms1' set but not used [-Wunused-but-set-variable] uint64_t numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpHuffmanWaveletTree.hpp:1936:20: warning: variable 'l_numsyms0' set but not used [-Wunused-but-set-variable] uint64_t l_numsyms0 = 0; ^ ./libmaus2/wavelet/Utf8ToImpHuffmanWaveletTree.hpp:1941:20: warning: variable 'r_numsyms1' set but not used [-Wunused-but-set-variable] uint64_t r_numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpHuffmanWaveletTree.hpp:1821:17: warning: variable 'numsyms1' set but not used [-Wunused-but-set-variable] uint64_t numsyms1 = 0; ^ In file included from test/testutf8split.cpp:203: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:334:20: warning: variable 'l_numsyms0' set but not used [-Wunused-but-set-variable] uint64_t l_numsyms0 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:339:20: warning: variable 'r_numsyms1' set but not used [-Wunused-but-set-variable] uint64_t r_numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:219:17: warning: variable 'numsyms1' set but not used [-Wunused-but-set-variable] uint64_t numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:20: warning: variable 'l_numsyms0' set but not used [-Wunused-but-set-variable] uint64_t l_numsyms0 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:20: warning: variable 'r_numsyms1' set but not used [-Wunused-but-set-variable] uint64_t r_numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:17: warning: variable 'numsyms1' set but not used [-Wunused-but-set-variable] uint64_t numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:20: warning: variable 'l_numsyms0' set but not used [-Wunused-but-set-variable] uint64_t l_numsyms0 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:20: warning: variable 'r_numsyms1' set but not used [-Wunused-but-set-variable] uint64_t r_numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:17: warning: variable 'numsyms1' set but not used [-Wunused-but-set-variable] uint64_t numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:20: warning: variable 'l_numsyms0' set but not used [-Wunused-but-set-variable] uint64_t l_numsyms0 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:20: warning: variable 'r_numsyms1' set but not used [-Wunused-but-set-variable] uint64_t r_numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:17: warning: variable 'numsyms1' set but not used [-Wunused-but-set-variable] uint64_t numsyms1 = 0; ^ In file included from test/testcirchash.cpp:20: In file included from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:23: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:16: warning: variable 'ln' set but not used [-Wunused-but-set-variable] uint64_t ln = 0; ^ 2 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testrmmtree-testrmmtree.o `test -f 'test/testrmmtree.cpp' || echo './'`test/testrmmtree.cpp 4 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testcst-testcst.o `test -f 'test/testcst.cpp' || echo './'`test/testcst.cpp 25 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbamcmp-testbamcmp.o `test -f 'test/testbamcmp.cpp' || echo './'`test/testbamcmp.cpp In file included from test/testcst.cpp:21: In file included from ./libmaus2/suffixtree/CompressedSuffixTree.hpp:22: In file included from ./libmaus2/lf/ImpCompactHuffmanWaveletLF.hpp:23: In file included from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:26: In file included from ./libmaus2/huffman/HuffmanTree.hpp:25: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from test/testbamcmp.cpp:19: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27: In file included from ./libmaus2/bambam/BamAuxFilterVector.hpp:22: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from test/testbamcmp.cpp:19: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ In file included from test/testbamcmp.cpp:19: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:16: warning: variable 'ln' set but not used [-Wunused-but-set-variable] uint64_t ln = 0; ^ 4 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbamdif-testbamdif.o `test -f 'test/testbamdif.cpp' || echo './'`test/testbamdif.cpp In file included from test/testbamdif.cpp:19: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27: In file included from ./libmaus2/bambam/BamAuxFilterVector.hpp:22: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testqreorder-testqreorder.o `test -f 'test/testqreorder.cpp' || echo './'`test/testqreorder.cpp In file included from test/testbamdif.cpp:19: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ In file included from test/testbamdif.cpp:19: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:16: warning: variable 'ln' set but not used [-Wunused-but-set-variable] uint64_t ln = 0; ^ 1 warning generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testfqbgzf-testfqbgzf.o `test -f 'test/testfqbgzf.cpp' || echo './'`test/testfqbgzf.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testcompactfastrandom-testcompactfastrandom.o `test -f 'test/testcompactfastrandom.cpp' || echo './'`test/testcompactfastrandom.cpp 4 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbamindex-testbamindex.o `test -f 'test/testbamindex.cpp' || echo './'`test/testbamindex.cpp In file included from test/testfqbgzf.cpp:23: In file included from ./libmaus2/fastx/StreamFastQReader.hpp:23: In file included from ./libmaus2/fastx/FastQReader.hpp:27: In file included from ./libmaus2/fastx/FastInterval.hpp:25: In file included from ./libmaus2/util/IntervalTree.hpp:25: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from test/testcompactfastrandom.cpp:1: In file included from ./libmaus2/fastx/CompactFastDecoder.hpp:22: In file included from ./libmaus2/aio/ReorderConcatGenericInput.hpp:24: In file included from ./libmaus2/aio/FileFragment.hpp:27: In file included from ./libmaus2/util/IntervalTree.hpp:25: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from test/testfqbgzf.cpp:38: ./libmaus2/clustering/KMeans.hpp:596:15: warning: variable 'clusters' set but not used [-Wunused-but-set-variable] double clusters = 0.0; ^ ./libmaus2/clustering/KMeans.hpp:672:15: warning: variable 'clusters' set but not used [-Wunused-but-set-variable] double clusters = 0.0; ^ In file included from test/testbamindex.cpp:21: In file included from ./libmaus2/bambam/BamIndexGenerator.hpp:31: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27: In file included from ./libmaus2/bambam/BamAuxFilterVector.hpp:22: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ 1 warning generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbamrewrite-testbamrewrite.o `test -f 'test/testbamrewrite.cpp' || echo './'`test/testbamrewrite.cpp In file included from test/testbamindex.cpp:21: In file included from ./libmaus2/bambam/BamIndexGenerator.hpp:31: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ In file included from test/testbamindex.cpp:23: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:16: warning: variable 'ln' set but not used [-Wunused-but-set-variable] uint64_t ln = 0; ^ In file included from test/testbamrewrite.cpp:21: In file included from ./libmaus2/bambam/BamParallelRewrite.hpp:23: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27: In file included from ./libmaus2/bambam/BamAuxFilterVector.hpp:22: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ 3 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testfastqstream-testfastqstream.o `test -f 'test/testfastqstream.cpp' || echo './'`test/testfastqstream.cpp In file included from test/testbamrewrite.cpp:21: In file included from ./libmaus2/bambam/BamParallelRewrite.hpp:23: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ In file included from test/testbamrewrite.cpp:21: In file included from ./libmaus2/bambam/BamParallelRewrite.hpp:23: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:16: warning: variable 'ln' set but not used [-Wunused-but-set-variable] uint64_t ln = 0; ^ 4 warnings generated. In file included from test/testfastqstream.cpp:20: In file included from ./libmaus2/fastx/StreamFastQReader.hpp:23: In file included from ./libmaus2/fastx/FastQReader.hpp:27: In file included from ./libmaus2/fastx/FastInterval.hpp:25: In file included from ./libmaus2/util/IntervalTree.hpp:25: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testsort-testsort.o `test -f 'test/testsort.cpp' || echo './'`test/testsort.cpp In file included from test/testsort.cpp:22: ./libmaus2/huffman/LFRankPosEncoder.hpp:455:15: warning: variable 'nummeta' set but not used [-Wunused-but-set-variable] uint64_t nummeta = 0; ^ In file included from test/testsort.cpp:605: In file included from ./libmaus2/sorting/PairFileSorting.hpp:27: In file included from ./libmaus2/aio/FileFragment.hpp:27: In file included from ./libmaus2/util/IntervalTree.hpp:25: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ 1 warning generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testexternalsort-testexternalsort.o `test -f 'test/testexternalsort.cpp' || echo './'`test/testexternalsort.cpp 4 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testcollatespeed-testcollatespeed.o `test -f 'test/testcollatespeed.cpp' || echo './'`test/testcollatespeed.cpp 4 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbamheaderparser-testbamheaderparser.o `test -f 'test/testbamheaderparser.cpp' || echo './'`test/testbamheaderparser.cpp In file included from test/testcollatespeed.cpp:21: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27: In file included from ./libmaus2/bambam/BamAuxFilterVector.hpp:22: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from test/testbamheaderparser.cpp:20: In file included from ./libmaus2/bambam/BamRangeDecoder.hpp:22: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27: In file included from ./libmaus2/bambam/BamAuxFilterVector.hpp:22: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbammergecoordinate-testbammergecoordinate.o `test -f 'test/testbammergecoordinate.cpp' || echo './'`test/testbammergecoordinate.cpp In file included from test/testcollatespeed.cpp:21: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ In file included from test/testbamheaderparser.cpp:20: In file included from ./libmaus2/bambam/BamRangeDecoder.hpp:22: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ In file included from test/testcollatespeed.cpp:21: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:16: warning: variable 'ln' set but not used [-Wunused-but-set-variable] uint64_t ln = 0; ^ In file included from test/testbammergecoordinate.cpp:20: In file included from ./libmaus2/bambam/BamMergeCoordinate.hpp:22: In file included from ./libmaus2/bambam/BamCatHeader.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27: In file included from ./libmaus2/bambam/BamAuxFilterVector.hpp:22: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from test/testbamheaderparser.cpp:20: In file included from ./libmaus2/bambam/BamRangeDecoder.hpp:22: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:16: warning: variable 'ln' set but not used [-Wunused-but-set-variable] uint64_t ln = 0; ^ In file included from test/testbammergecoordinate.cpp:20: In file included from ./libmaus2/bambam/BamMergeCoordinate.hpp:22: In file included from ./libmaus2/bambam/BamCatHeader.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ In file included from test/testbammergecoordinate.cpp:20: In file included from ./libmaus2/bambam/BamMergeCoordinate.hpp:22: In file included from ./libmaus2/bambam/BamCatHeader.hpp:23: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:16: warning: variable 'ln' set but not used [-Wunused-but-set-variable] uint64_t ln = 0; ^ 4 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbammergecollate-testbammergecollate.o `test -f 'test/testbammergecollate.cpp' || echo './'`test/testbammergecollate.cpp In file included from test/testbammergecollate.cpp:19: In file included from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentFilter.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27: In file included from ./libmaus2/bambam/BamAuxFilterVector.hpp:22: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from test/testbammergecollate.cpp:19: In file included from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentFilter.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ In file included from test/testbammergecollate.cpp:19: In file included from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:23: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:16: warning: variable 'ln' set but not used [-Wunused-but-set-variable] uint64_t ln = 0; ^ 4 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbammergequeryname-testbammergequeryname.o `test -f 'test/testbammergequeryname.cpp' || echo './'`test/testbammergequeryname.cpp In file included from test/testbammergequeryname.cpp:20: In file included from ./libmaus2/bambam/BamMergeQueryName.hpp:22: In file included from ./libmaus2/bambam/BamCatHeader.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27: In file included from ./libmaus2/bambam/BamAuxFilterVector.hpp:22: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from test/testbammergequeryname.cpp:20: In file included from ./libmaus2/bambam/BamMergeQueryName.hpp:22: In file included from ./libmaus2/bambam/BamCatHeader.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ In file included from test/testbammergequeryname.cpp:20: In file included from ./libmaus2/bambam/BamMergeQueryName.hpp:22: In file included from ./libmaus2/bambam/BamCatHeader.hpp:23: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:16: warning: variable 'ln' set but not used [-Wunused-but-set-variable] uint64_t ln = 0; ^ 2 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbamcat-testbamcat.o `test -f 'test/testbamcat.cpp' || echo './'`test/testbamcat.cpp In file included from test/testbamcat.cpp:20: In file included from ./libmaus2/bambam/BamCat.hpp:22: In file included from ./libmaus2/bambam/BamCatHeader.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27: In file included from ./libmaus2/bambam/BamAuxFilterVector.hpp:22: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from test/testbamcat.cpp:20: In file included from ./libmaus2/bambam/BamCat.hpp:22: In file included from ./libmaus2/bambam/BamCatHeader.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ In file included from test/testbamcat.cpp:20: In file included from ./libmaus2/bambam/BamCat.hpp:22: In file included from ./libmaus2/bambam/BamCatHeader.hpp:23: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:16: warning: variable 'ln' set but not used [-Wunused-but-set-variable] uint64_t ln = 0; ^ 4 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testautoarray2d-testautoarray2d.o `test -f 'test/testautoarray2d.cpp' || echo './'`test/testautoarray2d.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testhist-testhist.o `test -f 'test/testhist.cpp' || echo './'`test/testhist.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testfastaparse-testfastaparse.o `test -f 'test/testfastaparse.cpp' || echo './'`test/testfastaparse.cpp 4 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testvalidatebamindex-testvalidatebamindex.o `test -f 'test/testvalidatebamindex.cpp' || echo './'`test/testvalidatebamindex.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testeditdistance-testeditdistance.o `test -f 'test/testeditdistance.cpp' || echo './'`test/testeditdistance.cpp In file included from test/testeditdistance.cpp:20: In file included from ./libmaus2/lcs/MetaEditDistance.hpp:22: In file included from ./libmaus2/lcs/EditDistance.hpp:24: In file included from ./libmaus2/lcs/EditDistanceTraceContainer.hpp:22: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ In file included from test/testvalidatebamindex.cpp:21: In file included from ./libmaus2/bambam/BamIndexGenerator.hpp:31: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27: In file included from ./libmaus2/bambam/BamAuxFilterVector.hpp:22: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from test/testvalidatebamindex.cpp:21: In file included from ./libmaus2/bambam/BamIndexGenerator.hpp:31: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ In file included from test/testvalidatebamindex.cpp:23: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:16: warning: variable 'ln' set but not used [-Wunused-but-set-variable] uint64_t ln = 0; ^ 2 warnings generated. 4 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testsimplethreadpool-testsimplethreadpool.o `test -f 'test/testsimplethreadpool.cpp' || echo './'`test/testsimplethreadpool.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testsimplethreadpoolbamdecode-testsimplethreadpoolbamdecode.o `test -f 'test/testsimplethreadpoolbamdecode.cpp' || echo './'`test/testsimplethreadpoolbamdecode.cpp In file included from test/testsimplethreadpoolbamdecode.cpp:19: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27: In file included from ./libmaus2/bambam/BamAuxFilterVector.hpp:22: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from test/testsimplethreadpoolbamdecode.cpp:19: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testgaparraybyte-testgaparraybyte.o `test -f 'test/testgaparraybyte.cpp' || echo './'`test/testgaparraybyte.cpp In file included from test/testsimplethreadpoolbamdecode.cpp:21: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:16: warning: variable 'ln' set but not used [-Wunused-but-set-variable] uint64_t ln = 0; ^ In file included from test/testgaparraybyte.cpp:24: In file included from ./libmaus2/suffixsort/GapArrayByte.hpp:25: In file included from ./libmaus2/huffman/GapEncoder.hpp:25: In file included from ./libmaus2/huffman/GapDecoder.hpp:26: In file included from ./libmaus2/util/IntervalTree.hpp:25: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ 4 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testzlibconcat-testzlibconcat.o `test -f 'test/testzlibconcat.cpp' || echo './'`test/testzlibconcat.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testsimplecompressblock-testsimplecompressblock.o `test -f 'test/testsimplecompressblock.cpp' || echo './'`test/testsimplecompressblock.cpp 4 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testfaindex-testfaindex.o `test -f 'test/testfaindex.cpp' || echo './'`test/testfaindex.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testfastablockrecode-testfastablockrecode.o `test -f 'test/testfastablockrecode.cpp' || echo './'`test/testfastablockrecode.cpp 1 warning generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testrlhist-testrlhist.o `test -f 'test/testrlhist.cpp' || echo './'`test/testrlhist.cpp In file included from test/testfastablockrecode.cpp:21: In file included from ./libmaus2/fastx/FastaBPDecoder.hpp:22: In file included from ./libmaus2/fastx/FastaBPSequenceDecoder.hpp:25: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27: In file included from ./libmaus2/bambam/BamAuxFilterVector.hpp:22: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from test/testfastablockrecode.cpp:21: In file included from ./libmaus2/fastx/FastaBPDecoder.hpp:22: In file included from ./libmaus2/fastx/FastaBPSequenceDecoder.hpp:25: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testnumcpus-testnumcpus.o `test -f 'test/testnumcpus.cpp' || echo './'`test/testnumcpus.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testdiag-testdiag.o `test -f 'test/testdiag.cpp' || echo './'`test/testdiag.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testlowmembamheaderparser-testlowmembamheaderparser.o `test -f 'test/testlowmembamheaderparser.cpp' || echo './'`test/testlowmembamheaderparser.cpp In file included from test/testlowmembamheaderparser.cpp:20: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27: In file included from ./libmaus2/bambam/BamAuxFilterVector.hpp:22: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ 3 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testgeneflatfile-testgeneflatfile.o `test -f 'test/testgeneflatfile.cpp' || echo './'`test/testgeneflatfile.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testurlinputstream-testurlinputstream.o `test -f 'test/testurlinputstream.cpp' || echo './'`test/testurlinputstream.cpp In file included from test/testlowmembamheaderparser.cpp:20: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ In file included from test/testlowmembamheaderparser.cpp:20: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:16: warning: variable 'ln' set but not used [-Wunused-but-set-variable] uint64_t ln = 0; ^ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testsimpletrie-testsimpletrie.o `test -f 'test/testsimpletrie.cpp' || echo './'`test/testsimpletrie.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testlru-testlru.o `test -f 'test/testlru.cpp' || echo './'`test/testlru.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbytecnt-testbytecnt.o `test -f 'test/testbytecnt.cpp' || echo './'`test/testbytecnt.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/teststronglyconnectedcomponents-teststronglyconnectedcomponents.o `test -f 'test/teststronglyconnectedcomponents.cpp' || echo './'`test/teststronglyconnectedcomponents.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testtopologicalsorting-testtopologicalsorting.o `test -f 'test/testtopologicalsorting.cpp' || echo './'`test/testtopologicalsorting.cpp 4 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testlinebuffer-testlinebuffer.o `test -f 'test/testlinebuffer.cpp' || echo './'`test/testlinebuffer.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testsamdecoder-testsamdecoder.o `test -f 'test/testsamdecoder.cpp' || echo './'`test/testsamdecoder.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testdecimalnumberparser-testdecimalnumberparser.o `test -f 'test/testdecimalnumberparser.cpp' || echo './'`test/testdecimalnumberparser.cpp In file included from test/testsamdecoder.cpp:21: In file included from ./libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22: In file included from ./libmaus2/bambam/BamWriter.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27: In file included from ./libmaus2/bambam/BamAuxFilterVector.hpp:22: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from test/testsamdecoder.cpp:21: In file included from ./libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22: In file included from ./libmaus2/bambam/BamWriter.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testunsignedinteger-testunsignedinteger.o `test -f 'test/testunsignedinteger.cpp' || echo './'`test/testunsignedinteger.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testmd5-testmd5.o `test -f 'test/testmd5.cpp' || echo './'`test/testmd5.cpp 4 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testsha-testsha.o `test -f 'test/testsha.cpp' || echo './'`test/testsha.cpp In file included from test/testsamdecoder.cpp:22: In file included from ./libmaus2/bambam/SamDecoder.hpp:23: In file included from ./libmaus2/bambam/SamInfo.hpp:26: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:16: warning: variable 'ln' set but not used [-Wunused-but-set-variable] uint64_t ln = 0; ^ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testparallelbamvalidation-testparallelbamvalidation.o `test -f 'test/testparallelbamvalidation.cpp' || echo './'`test/testparallelbamvalidation.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testparallelbamrewrite-testparallelbamrewrite.o `test -f 'test/testparallelbamrewrite.cpp' || echo './'`test/testparallelbamrewrite.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbammateerase-testbammateerase.o `test -f 'test/testbammateerase.cpp' || echo './'`test/testbammateerase.cpp In file included from test/testparallelbamvalidation.cpp:40: In file included from ./libmaus2/bambam/parallel/ParseInfo.hpp:22: In file included from ./libmaus2/bambam/BamHeaderLowMem.hpp:25: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from test/testparallelbamrewrite.cpp:20: In file included from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22: In file included from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22: In file included from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27: In file included from ./libmaus2/bambam/BamAuxFilterVector.hpp:22: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from test/testparallelbamvalidation.cpp:40: In file included from ./libmaus2/bambam/parallel/ParseInfo.hpp:22: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:16: warning: variable 'ln' set but not used [-Wunused-but-set-variable] uint64_t ln = 0; ^ In file included from test/testbammateerase.cpp:20: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27: In file included from ./libmaus2/bambam/BamAuxFilterVector.hpp:22: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from test/testparallelbamvalidation.cpp:40: In file included from ./libmaus2/bambam/parallel/ParseInfo.hpp:24: In file included from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ In file included from test/testparallelbamrewrite.cpp:20: In file included from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22: In file included from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22: In file included from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ In file included from test/testbammateerase.cpp:20: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ In file included from test/testparallelbamrewrite.cpp:54: In file included from ./libmaus2/bambam/parallel/ParseInfo.hpp:22: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:16: warning: variable 'ln' set but not used [-Wunused-but-set-variable] uint64_t ln = 0; ^ In file included from test/testbammateerase.cpp:20: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:16: warning: variable 'ln' set but not used [-Wunused-but-set-variable] uint64_t ln = 0; ^ 4 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testparallelbamblocksort-testparallelbamblocksort.o `test -f 'test/testparallelbamblocksort.cpp' || echo './'`test/testparallelbamblocksort.cpp 4 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testmapperm-testmapperm.o `test -f 'test/testmapperm.cpp' || echo './'`test/testmapperm.cpp In file included from test/testparallelbamblocksort.cpp:19: In file included from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24: In file included from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:24: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27: In file included from ./libmaus2/bambam/BamAuxFilterVector.hpp:22: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from test/testmapperm.cpp:21: In file included from ./libmaus2/bambam/BamWriter.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27: In file included from ./libmaus2/bambam/BamAuxFilterVector.hpp:22: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from test/testparallelbamblocksort.cpp:19: In file included from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24: In file included from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:24: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ In file included from test/testparallelbamblocksort.cpp:19: In file included from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:36: In file included from ./libmaus2/bambam/parallel/GenericInputControlReadWorkPackageDispatcher.hpp:22: In file included from ./libmaus2/bambam/parallel/GenericInputControlReadWorkPackageReturnInterface.hpp:22: In file included from ./libmaus2/bambam/parallel/GenericInputControlReadWorkPackage.hpp:22: In file included from ./libmaus2/bambam/parallel/GenericInputSingleData.hpp:30: In file included from ./libmaus2/bambam/parallel/GenericInputSingleDataBamParseInfo.hpp:23: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:16: warning: variable 'ln' set but not used [-Wunused-but-set-variable] uint64_t ln = 0; ^ In file included from test/testmapperm.cpp:21: In file included from ./libmaus2/bambam/BamWriter.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ In file included from test/testparallelbamblocksort.cpp:20: In file included from ./libmaus2/bambam/parallel/BlockSortControl.hpp:37: In file included from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteReadEndsWorkPackageDispatcher.hpp:28: In file included from ./libmaus2/bambam/parallel/ReadEndsContainerFreeListInterface.hpp:22: In file included from ./libmaus2/bambam/ReadEndsContainer.hpp:34: In file included from ./libmaus2/bambam/ReadEndsBlockDecoderBase.hpp:31: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:99:18: warning: variable 'numcache' set but not used [-Wunused-but-set-variable] unsigned int numcache = 0; ^ 4 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testexternalmemoryindex-testexternalmemoryindex.o `test -f 'test/testexternalmemoryindex.cpp' || echo './'`test/testexternalmemoryindex.cpp In file included from test/testexternalmemoryindex.cpp:20: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:99:18: warning: variable 'numcache' set but not used [-Wunused-but-set-variable] unsigned int numcache = 0; ^ In file included from test/testexternalmemoryindex.cpp:22: In file included from ./libmaus2/bambam/ReadEndsBase.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27: In file included from ./libmaus2/bambam/BamAuxFilterVector.hpp:22: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from test/testexternalmemoryindex.cpp:22: In file included from ./libmaus2/bambam/ReadEndsBase.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ 3 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testfastqtobam-testfastqtobam.o `test -f 'test/testfastqtobam.cpp' || echo './'`test/testfastqtobam.cpp 4 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testsamrecoding-testsamrecoding.o `test -f 'test/testsamrecoding.cpp' || echo './'`test/testsamrecoding.cpp In file included from test/testfastqtobam.cpp:22: In file included from ./libmaus2/bambam/parallel/FastqToBamControl.hpp:22: In file included from ./libmaus2/bambam/parallel/FastqParsePackageDispatcher.hpp:28: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27: In file included from ./libmaus2/bambam/BamAuxFilterVector.hpp:22: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ 4 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testdazzlerdb-testdazzlerdb.o `test -f 'test/testdazzlerdb.cpp' || echo './'`test/testdazzlerdb.cpp In file included from test/testsamrecoding.cpp:20: In file included from ./libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27: In file included from ./libmaus2/bambam/BamAuxFilterVector.hpp:22: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from test/testfastqtobam.cpp:22: In file included from ./libmaus2/bambam/parallel/FastqToBamControl.hpp:22: In file included from ./libmaus2/bambam/parallel/FastqParsePackageDispatcher.hpp:28: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ In file included from test/testsamrecoding.cpp:20: In file included from ./libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ In file included from test/testsamrecoding.cpp:20: In file included from ./libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:16: warning: variable 'ln' set but not used [-Wunused-but-set-variable] uint64_t ln = 0; ^ In file included from test/testdazzlerdb.cpp:18: In file included from ./libmaus2/dazzler/align/TandemVectorPartContainer.hpp:22: In file included from ./libmaus2/dazzler/align/TandemVector.hpp:21: In file included from ./libmaus2/dazzler/align/Tandem.hpp:21: In file included from ./libmaus2/dazzler/align/OverlapMeta.hpp:21: In file included from ./libmaus2/dazzler/align/Overlap.hpp:22: In file included from ./libmaus2/lcs/Aligner.hpp:21: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ In file included from test/testdazzlerdb.cpp:19: In file included from ./libmaus2/dazzler/align/OverlapMetaIteratorGet.hpp:21: In file included from ./libmaus2/dazzler/align/OverlapIndexer.hpp:30: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:99:18: warning: variable 'numcache' set but not used [-Wunused-but-set-variable] unsigned int numcache = 0; ^ In file included from test/testdazzlerdb.cpp:32: ./libmaus2/dazzler/align/SortingOverlapOutputBuffer.hpp:132:15: warning: variable 'novl' set but not used [-Wunused-but-set-variable] uint64_t novl = 0; ^ 3 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testfastashred-testfastashred.o `test -f 'test/testfastashred.cpp' || echo './'`test/testfastashred.cpp In file included from test/testfastashred.cpp:20: In file included from ./libmaus2/fastx/StreamFastAReader.hpp:23: In file included from ./libmaus2/fastx/FastAReader.hpp:31: In file included from ./libmaus2/fastx/FastInterval.hpp:25: In file included from ./libmaus2/util/IntervalTree.hpp:25: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ 4 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testalignerspeed-testalignerspeed.o `test -f 'test/testalignerspeed.cpp' || echo './'`test/testalignerspeed.cpp 1 warning generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testfastasingleline-testfastasingleline.o `test -f 'test/testfastasingleline.cpp' || echo './'`test/testfastasingleline.cpp In file included from test/testalignerspeed.cpp:18: In file included from ./libmaus2/lcs/NNPCor.hpp:22: In file included from ./libmaus2/lcs/NNPTraceContainer.hpp:23: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ In file included from test/testalignerspeed.cpp:18: ./libmaus2/lcs/NNPCor.hpp:1985:14: warning: variable 'ed' set but not used [-Wunused-but-set-variable] uint64_t ed = 0; ^ ./libmaus2/lcs/NNPCor.hpp:2114:14: warning: variable 'ed' set but not used [-Wunused-but-set-variable] uint64_t ed = 0; ^ In file included from test/testfastasingleline.cpp:18: In file included from ./libmaus2/fastx/StreamFastAReader.hpp:23: In file included from ./libmaus2/fastx/FastAReader.hpp:31: In file included from ./libmaus2/fastx/FastInterval.hpp:25: In file included from ./libmaus2/util/IntervalTree.hpp:25: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from test/testalignerspeed.cpp:39: In file included from ./libmaus2/random/DNABaseNoiseSpiker.hpp:22: In file included from ./libmaus2/fastx/StreamFastAReader.hpp:23: In file included from ./libmaus2/fastx/FastAReader.hpp:31: In file included from ./libmaus2/fastx/FastInterval.hpp:25: In file included from ./libmaus2/util/IntervalTree.hpp:25: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ 1 warning generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testdazzleralignmentrewrite-testdazzleralignmentrewrite.o `test -f 'test/testdazzleralignmentrewrite.cpp' || echo './'`test/testdazzleralignmentrewrite.cpp In file included from test/testdazzleralignmentrewrite.cpp:18: In file included from ./libmaus2/dazzler/align/AlignmentFile.hpp:21: In file included from ./libmaus2/dazzler/align/Overlap.hpp:22: In file included from ./libmaus2/lcs/Aligner.hpp:21: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ 2 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testxz-testxz.o `test -f 'test/testxz.cpp' || echo './'`test/testxz.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testdazzlerindex-testdazzlerindex.o `test -f 'test/testdazzlerindex.cpp' || echo './'`test/testdazzlerindex.cpp In file included from test/testdazzlerindex.cpp:19: In file included from ./libmaus2/dazzler/align/OverlapIndexer.hpp:21: In file included from ./libmaus2/dazzler/align/AlignmentFileDecoder.hpp:21: In file included from ./libmaus2/dazzler/align/DalignerIndexDecoder.hpp:21: In file included from ./libmaus2/dazzler/align/AlignmentFile.hpp:21: In file included from ./libmaus2/dazzler/align/Overlap.hpp:22: In file included from ./libmaus2/lcs/Aligner.hpp:21: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ In file included from test/testdazzlerindex.cpp:19: In file included from ./libmaus2/dazzler/align/OverlapIndexer.hpp:30: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:99:18: warning: variable 'numcache' set but not used [-Wunused-but-set-variable] unsigned int numcache = 0; ^ 5 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testargparser-testargparser.o `test -f 'test/testargparser.cpp' || echo './'`test/testargparser.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testdnarank-testdnarank.o `test -f 'test/testdnarank.cpp' || echo './'`test/testdnarank.cpp 3 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testlowbits-testlowbits.o `test -f 'test/testlowbits.cpp' || echo './'`test/testlowbits.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testfastaexplode-testfastaexplode.o `test -f 'test/testfastaexplode.cpp' || echo './'`test/testfastaexplode.cpp In file included from test/testfastaexplode.cpp:21: In file included from ./libmaus2/fastx/StreamFastAReader.hpp:23: In file included from ./libmaus2/fastx/FastAReader.hpp:31: In file included from ./libmaus2/fastx/FastInterval.hpp:25: In file included from ./libmaus2/util/IntervalTree.hpp:25: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from test/testdnarank.cpp:20: In file included from ./libmaus2/rank/DNARankSuffixTreeNodeEnumerator.hpp:22: In file included from ./libmaus2/rank/DNARank.hpp:35: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from test/testdnarank.cpp:29: In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:334:20: warning: variable 'l_numsyms0' set but not used [-Wunused-but-set-variable] uint64_t l_numsyms0 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:339:20: warning: variable 'r_numsyms1' set but not used [-Wunused-but-set-variable] uint64_t r_numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:219:17: warning: variable 'numsyms1' set but not used [-Wunused-but-set-variable] uint64_t numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:20: warning: variable 'l_numsyms0' set but not used [-Wunused-but-set-variable] uint64_t l_numsyms0 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:20: warning: variable 'r_numsyms1' set but not used [-Wunused-but-set-variable] uint64_t r_numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:17: warning: variable 'numsyms1' set but not used [-Wunused-but-set-variable] uint64_t numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:20: warning: variable 'l_numsyms0' set but not used [-Wunused-but-set-variable] uint64_t l_numsyms0 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:20: warning: variable 'r_numsyms1' set but not used [-Wunused-but-set-variable] uint64_t r_numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:17: warning: variable 'numsyms1' set but not used [-Wunused-but-set-variable] uint64_t numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:20: warning: variable 'l_numsyms0' set but not used [-Wunused-but-set-variable] uint64_t l_numsyms0 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:20: warning: variable 'r_numsyms1' set but not used [-Wunused-but-set-variable] uint64_t r_numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:17: warning: variable 'numsyms1' set but not used [-Wunused-but-set-variable] uint64_t numsyms1 = 0; ^ 1 warning generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testfaextract-testfaextract.o `test -f 'test/testfaextract.cpp' || echo './'`test/testfaextract.cpp In file included from test/testfaextract.cpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27: In file included from ./libmaus2/bambam/BamAuxFilterVector.hpp:22: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from test/testfaextract.cpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ 4 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testmurmur3-testmurmur3.o `test -f 'test/testmurmur3.cpp' || echo './'`test/testmurmur3.cpp In file included from test/testfaextract.cpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:16: warning: variable 'ln' set but not used [-Wunused-but-set-variable] uint64_t ln = 0; ^ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testpairalign-testpairalign.o `test -f 'test/testpairalign.cpp' || echo './'`test/testpairalign.cpp In file included from test/testpairalign.cpp:18: In file included from ./libmaus2/fastx/FastAReader.hpp:31: In file included from ./libmaus2/fastx/FastInterval.hpp:25: In file included from ./libmaus2/util/IntervalTree.hpp:25: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from test/testpairalign.cpp:20: In file included from ./libmaus2/lcs/NP.hpp:21: In file included from ./libmaus2/lcs/Aligner.hpp:21: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ 4 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testsplaytree-testsplaytree.o `test -f 'test/testsplaytree.cpp' || echo './'`test/testsplaytree.cpp In file included from test/testpairalign.cpp:24: In file included from ./libmaus2/dazzler/align/AlignmentWriter.hpp:21: In file included from ./libmaus2/dazzler/align/OverlapIndexer.hpp:30: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:99:18: warning: variable 'numcache' set but not used [-Wunused-but-set-variable] unsigned int numcache = 0; ^ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbwtconstruction-testbwtconstruction.o `test -f 'test/testbwtconstruction.cpp' || echo './'`test/testbwtconstruction.cpp In file included from test/testbwtconstruction.cpp:19: In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22: In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22: In file included from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24: In file included from ./libmaus2/gamma/GammaRLEncoder.hpp:29: In file included from ./libmaus2/gamma/GammaRLDecoder.hpp:28: In file included from ./libmaus2/util/IntervalTree.hpp:25: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from test/testbwtconstruction.cpp:19: In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22: In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:37: In file included from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22: In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:334:20: warning: variable 'l_numsyms0' set but not used [-Wunused-but-set-variable] uint64_t l_numsyms0 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:339:20: warning: variable 'r_numsyms1' set but not used [-Wunused-but-set-variable] uint64_t r_numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:219:17: warning: variable 'numsyms1' set but not used [-Wunused-but-set-variable] uint64_t numsyms1 = 0; ^ 4 warnings generated. ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:20: warning: variable 'l_numsyms0' set but not used [-Wunused-but-set-variable] uint64_t l_numsyms0 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:20: warning: variable 'r_numsyms1' set but not used [-Wunused-but-set-variable] uint64_t r_numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:17: warning: variable 'numsyms1' set but not used [-Wunused-but-set-variable] uint64_t numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:20: warning: variable 'l_numsyms0' set but not used [-Wunused-but-set-variable] uint64_t l_numsyms0 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:20: warning: variable 'r_numsyms1' set but not used [-Wunused-but-set-variable] uint64_t r_numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:17: warning: variable 'numsyms1' set but not used [-Wunused-but-set-variable] uint64_t numsyms1 = 0; ^ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbwtconstructionfasta-testbwtconstructionfasta.o `test -f 'test/testbwtconstructionfasta.cpp' || echo './'`test/testbwtconstructionfasta.cpp ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:20: warning: variable 'l_numsyms0' set but not used [-Wunused-but-set-variable] uint64_t l_numsyms0 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:20: warning: variable 'r_numsyms1' set but not used [-Wunused-but-set-variable] uint64_t r_numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:17: warning: variable 'numsyms1' set but not used [-Wunused-but-set-variable] uint64_t numsyms1 = 0; ^ In file included from test/testbwtconstructionfasta.cpp:22: In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22: In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22: In file included from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24: In file included from ./libmaus2/gamma/GammaRLEncoder.hpp:29: In file included from ./libmaus2/gamma/GammaRLDecoder.hpp:28: In file included from ./libmaus2/util/IntervalTree.hpp:25: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from test/testbwtconstructionfasta.cpp:22: In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22: In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:37: In file included from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22: In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:334:20: warning: variable 'l_numsyms0' set but not used [-Wunused-but-set-variable] uint64_t l_numsyms0 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:339:20: warning: variable 'r_numsyms1' set but not used [-Wunused-but-set-variable] uint64_t r_numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:219:17: warning: variable 'numsyms1' set but not used [-Wunused-but-set-variable] uint64_t numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:20: warning: variable 'l_numsyms0' set but not used [-Wunused-but-set-variable] uint64_t l_numsyms0 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:20: warning: variable 'r_numsyms1' set but not used [-Wunused-but-set-variable] uint64_t r_numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:17: warning: variable 'numsyms1' set but not used [-Wunused-but-set-variable] uint64_t numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:20: warning: variable 'l_numsyms0' set but not used [-Wunused-but-set-variable] uint64_t l_numsyms0 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:20: warning: variable 'r_numsyms1' set but not used [-Wunused-but-set-variable] uint64_t r_numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:17: warning: variable 'numsyms1' set but not used [-Wunused-but-set-variable] uint64_t numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:20: warning: variable 'l_numsyms0' set but not used [-Wunused-but-set-variable] uint64_t l_numsyms0 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:20: warning: variable 'r_numsyms1' set but not used [-Wunused-but-set-variable] uint64_t r_numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:17: warning: variable 'numsyms1' set but not used [-Wunused-but-set-variable] uint64_t numsyms1 = 0; ^ 13 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testarrayinput-testarrayinput.o `test -f 'test/testarrayinput.cpp' || echo './'`test/testarrayinput.cpp 13 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testsymcnt-testsymcnt.o `test -f 'test/testsymcnt.cpp' || echo './'`test/testsymcnt.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testgammapd-testgammapd.o `test -f 'test/testgammapd.cpp' || echo './'`test/testgammapd.cpp 13 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testdnasuffixtrav-testdnasuffixtrav.o `test -f 'test/testdnasuffixtrav.cpp' || echo './'`test/testdnasuffixtrav.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testserialisedsorting-testserialisedsorting.o `test -f 'test/testserialisedsorting.cpp' || echo './'`test/testserialisedsorting.cpp In file included from test/testdnasuffixtrav.cpp:22: In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22: In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22: In file included from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24: In file included from ./libmaus2/gamma/GammaRLEncoder.hpp:29: In file included from ./libmaus2/gamma/GammaRLDecoder.hpp:28: In file included from ./libmaus2/util/IntervalTree.hpp:25: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from test/testdnasuffixtrav.cpp:22: In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22: In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:37: In file included from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22: In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:334:20: warning: variable 'l_numsyms0' set but not used [-Wunused-but-set-variable] uint64_t l_numsyms0 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:339:20: warning: variable 'r_numsyms1' set but not used [-Wunused-but-set-variable] uint64_t r_numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:219:17: warning: variable 'numsyms1' set but not used [-Wunused-but-set-variable] uint64_t numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:20: warning: variable 'l_numsyms0' set but not used [-Wunused-but-set-variable] uint64_t l_numsyms0 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:20: warning: variable 'r_numsyms1' set but not used [-Wunused-but-set-variable] uint64_t r_numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:17: warning: variable 'numsyms1' set but not used [-Wunused-but-set-variable] uint64_t numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:20: warning: variable 'l_numsyms0' set but not used [-Wunused-but-set-variable] uint64_t l_numsyms0 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:20: warning: variable 'r_numsyms1' set but not used [-Wunused-but-set-variable] uint64_t r_numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:17: warning: variable 'numsyms1' set but not used [-Wunused-but-set-variable] uint64_t numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:20: warning: variable 'l_numsyms0' set but not used [-Wunused-but-set-variable] uint64_t l_numsyms0 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:20: warning: variable 'r_numsyms1' set but not used [-Wunused-but-set-variable] uint64_t r_numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:17: warning: variable 'numsyms1' set but not used [-Wunused-but-set-variable] uint64_t numsyms1 = 0; ^ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbamnumericalindex-testbamnumericalindex.o `test -f 'test/testbamnumericalindex.cpp' || echo './'`test/testbamnumericalindex.cpp In file included from test/testbamnumericalindex.cpp:19: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27: In file included from ./libmaus2/bambam/BamAuxFilterVector.hpp:22: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from test/testbamnumericalindex.cpp:19: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ In file included from test/testbamnumericalindex.cpp:19: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:16: warning: variable 'ln' set but not used [-Wunused-but-set-variable] uint64_t ln = 0; ^ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testnpl-testnpl.o `test -f 'test/testnpl.cpp' || echo './'`test/testnpl.cpp In file included from test/testnpl.cpp:18: In file included from ./libmaus2/lcs/NPLinMem.hpp:21: In file included from ./libmaus2/lcs/NPNoTrace.hpp:21: In file included from ./libmaus2/lcs/Aligner.hpp:21: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ In file included from test/testnpl.cpp:21: ./libmaus2/lcs/NNPCor.hpp:1985:14: warning: variable 'ed' set but not used [-Wunused-but-set-variable] uint64_t ed = 0; ^ ./libmaus2/lcs/NNPCor.hpp:2114:14: warning: variable 'ed' set but not used [-Wunused-but-set-variable] uint64_t ed = 0; ^ 13 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testkcnt-testkcnt.o `test -f 'test/testkcnt.cpp' || echo './'`test/testkcnt.cpp 5 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testintervaltree-testintervaltree.o `test -f 'test/testintervaltree.cpp' || echo './'`test/testintervaltree.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testbamgetrefreg-testbamgetrefreg.o `test -f 'test/testbamgetrefreg.cpp' || echo './'`test/testbamgetrefreg.cpp 4 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/teststringgraph-teststringgraph.o `test -f 'test/teststringgraph.cpp' || echo './'`test/teststringgraph.cpp In file included from test/testbamgetrefreg.cpp:20: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27: In file included from ./libmaus2/bambam/BamAuxFilterVector.hpp:22: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from test/testbamgetrefreg.cpp:20: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ In file included from test/teststringgraph.cpp:20: In file included from ./libmaus2/fastx/FastAReader.hpp:31: In file included from ./libmaus2/fastx/FastInterval.hpp:25: In file included from ./libmaus2/util/IntervalTree.hpp:25: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from test/testbamgetrefreg.cpp:20: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:16: warning: variable 'ln' set but not used [-Wunused-but-set-variable] uint64_t ln = 0; ^ 4 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testlognormal-testlognormal.o `test -f 'test/testlognormal.cpp' || echo './'`test/testlognormal.cpp In file included from test/testlognormal.cpp:20: In file included from ./libmaus2/fastx/StreamFastAReader.hpp:23: In file included from ./libmaus2/fastx/FastAReader.hpp:31: In file included from ./libmaus2/fastx/FastInterval.hpp:25: In file included from ./libmaus2/util/IntervalTree.hpp:25: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ 1 warning generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testConstantSumCombinatorics-testConstantSumCombinatorics.o `test -f 'test/testConstantSumCombinatorics.cpp' || echo './'`test/testConstantSumCombinatorics.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testmatrix-testmatrix.o `test -f 'test/testmatrix.cpp' || echo './'`test/testmatrix.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testconvpowercache-testconvpowercache.o `test -f 'test/testconvpowercache.cpp' || echo './'`test/testconvpowercache.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testlassort-testlassort.o `test -f 'test/testlassort.cpp' || echo './'`test/testlassort.cpp In file included from test/testlassort.cpp:20: In file included from ./libmaus2/dazzler/align/LasSort2.hpp:21: In file included from ./libmaus2/dazzler/align/SimpleOverlapParser.hpp:22: In file included from ./libmaus2/dazzler/align/OverlapParser.hpp:22: In file included from ./libmaus2/dazzler/align/OverlapData.hpp:23: In file included from ./libmaus2/dazzler/align/Overlap.hpp:22: In file included from ./libmaus2/lcs/Aligner.hpp:21: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ In file included from test/testlassort.cpp:20: In file included from ./libmaus2/dazzler/align/LasSort2.hpp:26: In file included from ./libmaus2/dazzler/align/OverlapIndexer.hpp:30: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:99:18: warning: variable 'numcache' set but not used [-Wunused-but-set-variable] unsigned int numcache = 0; ^ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testnnplocalaligner-testnnplocalaligner.o `test -f 'test/testnnplocalaligner.cpp' || echo './'`test/testnnplocalaligner.cpp 4 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testBamRawDecoder-testBamRawDecoder.o `test -f 'test/testBamRawDecoder.cpp' || echo './'`test/testBamRawDecoder.cpp 1 warning generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testpanic-testpanic.o `test -f 'test/testpanic.cpp' || echo './'`test/testpanic.cpp In file included from test/testnnplocalaligner.cpp:21: In file included from ./libmaus2/dazzler/align/Overlap.hpp:22: In file included from ./libmaus2/lcs/Aligner.hpp:21: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ In file included from test/testnnplocalaligner.cpp:22: In file included from ./libmaus2/lcs/NNPCorLocalAligner.hpp:21: ./libmaus2/lcs/NNPCor.hpp:1985:14: warning: variable 'ed' set but not used [-Wunused-but-set-variable] uint64_t ed = 0; ^ ./libmaus2/lcs/NNPCor.hpp:2114:14: warning: variable 'ed' set but not used [-Wunused-but-set-variable] uint64_t ed = 0; ^ In file included from test/testnnplocalaligner.cpp:24: In file included from ./libmaus2/dazzler/align/AlignmentWriter.hpp:21: In file included from ./libmaus2/dazzler/align/OverlapIndexer.hpp:30: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:99:18: warning: variable 'numcache' set but not used [-Wunused-but-set-variable] unsigned int numcache = 0; ^ In file included from test/testBamRawDecoder.cpp:21: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27: In file included from ./libmaus2/bambam/BamAuxFilterVector.hpp:22: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from test/testBamRawDecoder.cpp:21: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testavlset-testavlset.o `test -f 'test/testavlset.cpp' || echo './'`test/testavlset.cpp 3 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testlibcurl-testlibcurl.o `test -f 'test/testlibcurl.cpp' || echo './'`test/testlibcurl.cpp 3 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testRunLengthBitVector-testRunLengthBitVector.o `test -f 'test/testRunLengthBitVector.cpp' || echo './'`test/testRunLengthBitVector.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testnplself-testnplself.o `test -f 'test/testnplself.cpp' || echo './'`test/testnplself.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testCopy-testCopy.o `test -f 'test/testCopy.cpp' || echo './'`test/testCopy.cpp In file included from test/testnplself.cpp:18: In file included from ./libmaus2/lcs/NPLSelf.hpp:21: In file included from ./libmaus2/lcs/Aligner.hpp:21: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ test/testRunLengthBitVector.cpp:124:13: warning: variable 'runsum' set but not used [-Wunused-but-set-variable] uint64_t runsum = 0; ^ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testprotalign-testprotalign.o `test -f 'test/testprotalign.cpp' || echo './'`test/testprotalign.cpp 2 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testparasail-testparasail.o `test -f 'test/testparasail.cpp' || echo './'`test/testparasail.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -mavx2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testavx-testavx.o `test -f 'test/testavx.cpp' || echo './'`test/testavx.cpp In file included from test/testparasail.cpp:18: In file included from ./libmaus2/protein/ProteinAlignment.hpp:26: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ 2 warnings generated. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o test/testThreadPool-testThreadPool.o `test -f 'test/testThreadPool.cpp' || echo './'`test/testThreadPool.cpp In file included from test/testavx.cpp:18: In file included from ./libmaus2/lcs/AlignmentOneAgainstManyFactory.hpp:21: In file included from ./libmaus2/lcs/AlignmentOneAgainstManyGeneric.hpp:22: In file included from ./libmaus2/lcs/NP.hpp:21: In file included from ./libmaus2/lcs/Aligner.hpp:21: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ 2 warnings generated. /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/la-StaticInitialization.lo `test -f 'libmaus2/StaticInitialization.cpp' || echo './'`libmaus2/StaticInitialization.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/StaticInitialization.cpp -fPIC -DPIC -o libmaus2/.libs/la-StaticInitialization.o 1 warning generated. /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bitio/la-CompactArray.lo `test -f 'libmaus2/bitio/CompactArray.cpp' || echo './'`libmaus2/bitio/CompactArray.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bitio/CompactArray.cpp -fPIC -DPIC -o libmaus2/bitio/.libs/la-CompactArray.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bitio/CompactArray.cpp -o libmaus2/bitio/la-CompactArray.o >/dev/null 2>&1 In file included from libmaus2/StaticInitialization.cpp:499: In file included from ./libmaus2/sorting/PairFileSorting.hpp:27: In file included from ./libmaus2/aio/FileFragment.hpp:27: In file included from ./libmaus2/util/IntervalTree.hpp:25: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ 5 warnings generated. /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/rank/la-RankTable.lo `test -f 'libmaus2/rank/RankTable.cpp' || echo './'`libmaus2/rank/RankTable.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/rank/RankTable.cpp -fPIC -DPIC -o libmaus2/rank/.libs/la-RankTable.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/rank/la-log2table.lo `test -f 'libmaus2/rank/log2table.cpp' || echo './'`libmaus2/rank/log2table.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/rank/log2table.cpp -fPIC -DPIC -o libmaus2/rank/.libs/la-log2table.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/fastx/la-isFastQ.lo `test -f 'libmaus2/fastx/isFastQ.cpp' || echo './'`libmaus2/fastx/isFastQ.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/isFastQ.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-isFastQ.o In file included from libmaus2/StaticInitialization.cpp:560: In file included from ./libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/rank/log2table.cpp -o libmaus2/rank/la-log2table.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/rank/RankTable.cpp -o libmaus2/rank/la-RankTable.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fastx/isFastQ.cpp -o libmaus2/fastx/la-isFastQ.o >/dev/null 2>&1 In file included from libmaus2/StaticInitialization.cpp:560: In file included from ./libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23: In file included from ./libmaus2/bambam/BamDecoder.hpp:22: In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:16: warning: variable 'ln' set but not used [-Wunused-but-set-variable] uint64_t ln = 0; ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/wavelet/la-toWaveletTreeBits.lo `test -f 'libmaus2/wavelet/toWaveletTreeBits.cpp' || echo './'`libmaus2/wavelet/toWaveletTreeBits.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/wavelet/toWaveletTreeBits.cpp -fPIC -DPIC -o libmaus2/wavelet/.libs/la-toWaveletTreeBits.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/suffixsort/la-divsufsort.lo `test -f 'libmaus2/suffixsort/divsufsort.cpp' || echo './'`libmaus2/suffixsort/divsufsort.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/divsufsort.cpp -fPIC -DPIC -o libmaus2/suffixsort/.libs/la-divsufsort.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/digest/la-md5.lo `test -f 'libmaus2/digest/md5.cpp' || echo './'`libmaus2/digest/md5.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/digest/md5.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-md5.o libmaus2/digest/md5.cpp:164:18: warning: performing pointer subtraction with a null pointer may have undefined behavior [-Wnull-pointer-subtraction] if (!((data - (const md5_byte_t *)0) & 3)) { ^ ~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/digest/md5.cpp -o libmaus2/digest/la-md5.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/math/la-primes16.lo `test -f 'libmaus2/math/primes16.cpp' || echo './'`libmaus2/math/primes16.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/math/primes16.cpp -fPIC -DPIC -o libmaus2/math/.libs/la-primes16.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/math/primes16.cpp -o libmaus2/math/la-primes16.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/divsufsort.cpp -o libmaus2/suffixsort/la-divsufsort.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/util/la-OutputFileNameTools.lo `test -f 'libmaus2/util/OutputFileNameTools.cpp' || echo './'`libmaus2/util/OutputFileNameTools.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/OutputFileNameTools.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-OutputFileNameTools.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/util/OutputFileNameTools.cpp -o libmaus2/util/la-OutputFileNameTools.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/select/la-ESelectBase.lo `test -f 'libmaus2/select/ESelectBase.cpp' || echo './'`libmaus2/select/ESelectBase.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/select/ESelectBase.cpp -fPIC -DPIC -o libmaus2/select/.libs/la-ESelectBase.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bambam/la-CigarStringParser.lo `test -f 'libmaus2/bambam/CigarStringParser.cpp' || echo './'`libmaus2/bambam/CigarStringParser.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/CigarStringParser.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-CigarStringParser.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/select/ESelectBase.cpp -o libmaus2/select/la-ESelectBase.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/wavelet/toWaveletTreeBits.cpp -o libmaus2/wavelet/la-toWaveletTreeBits.o >/dev/null 2>&1 In file included from libmaus2/bambam/CigarStringParser.cpp:20: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ 2 warnings generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/CigarStringParser.cpp -o libmaus2/bambam/la-CigarStringParser.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lz/la-SnappyCompress.lo `test -f 'libmaus2/lz/SnappyCompress.cpp' || echo './'`libmaus2/lz/SnappyCompress.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lz/SnappyCompress.cpp -fPIC -DPIC -o libmaus2/lz/.libs/la-SnappyCompress.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lz/SnappyCompress.cpp -o libmaus2/lz/la-SnappyCompress.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/huffman/la-IndexLoaderBase.lo `test -f 'libmaus2/huffman/IndexLoaderBase.cpp' || echo './'`libmaus2/huffman/IndexLoaderBase.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/huffman/IndexLoaderBase.cpp -fPIC -DPIC -o libmaus2/huffman/.libs/la-IndexLoaderBase.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/fm/la-MausFmToBwaConversion.lo `test -f 'libmaus2/fm/MausFmToBwaConversion.cpp' || echo './'`libmaus2/fm/MausFmToBwaConversion.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fm/MausFmToBwaConversion.cpp -fPIC -DPIC -o libmaus2/fm/.libs/la-MausFmToBwaConversion.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/suffixtree/la-CompressedSuffixTree.lo `test -f 'libmaus2/suffixtree/CompressedSuffixTree.cpp' || echo './'`libmaus2/suffixtree/CompressedSuffixTree.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixtree/CompressedSuffixTree.cpp -fPIC -DPIC -o libmaus2/suffixtree/.libs/la-CompressedSuffixTree.o In file included from libmaus2/suffixtree/CompressedSuffixTree.cpp:19: In file included from ./libmaus2/suffixtree/CompressedSuffixTree.hpp:22: In file included from ./libmaus2/lf/ImpCompactHuffmanWaveletLF.hpp:23: In file included from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:26: In file included from ./libmaus2/huffman/HuffmanTree.hpp:25: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from libmaus2/fm/MausFmToBwaConversion.cpp:24: In file included from ./libmaus2/gamma/GammaRLDecoder.hpp:28: In file included from ./libmaus2/util/IntervalTree.hpp:25: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/huffman/IndexLoaderBase.cpp -o libmaus2/huffman/la-IndexLoaderBase.o >/dev/null 2>&1 4 warnings generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/StaticInitialization.cpp -o libmaus2/la-StaticInitialization.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/gamma/la-SparseGammaGapFileIndexDecoderEntry.lo `test -f 'libmaus2/gamma/SparseGammaGapFileIndexDecoderEntry.cpp' || echo './'`libmaus2/gamma/SparseGammaGapFileIndexDecoderEntry.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/gamma/SparseGammaGapFileIndexDecoderEntry.cpp -fPIC -DPIC -o libmaus2/gamma/.libs/la-SparseGammaGapFileIndexDecoderEntry.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/gamma/SparseGammaGapFileIndexDecoderEntry.cpp -o libmaus2/gamma/la-SparseGammaGapFileIndexDecoderEntry.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/lcs/la-EditDistanceResult.lo `test -f 'libmaus2/lcs/EditDistanceResult.cpp' || echo './'`libmaus2/lcs/EditDistanceResult.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/EditDistanceResult.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-EditDistanceResult.o 1 warning generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixtree/CompressedSuffixTree.cpp -o libmaus2/suffixtree/la-CompressedSuffixTree.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/lcs/EditDistanceResult.cpp -o libmaus2/lcs/la-EditDistanceResult.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/hashing/la-Crc32.lo `test -f 'libmaus2/hashing/Crc32.cpp' || echo './'`libmaus2/hashing/Crc32.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/hashing/Crc32.cpp -fPIC -DPIC -o libmaus2/hashing/.libs/la-Crc32.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/hashing/Crc32.cpp -o libmaus2/hashing/la-Crc32.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/hashing/la-MurmurHash3.lo `test -f 'libmaus2/hashing/MurmurHash3.cpp' || echo './'`libmaus2/hashing/MurmurHash3.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/hashing/MurmurHash3.cpp -fPIC -DPIC -o libmaus2/hashing/.libs/la-MurmurHash3.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/hashing/MurmurHash3.cpp -o libmaus2/hashing/la-MurmurHash3.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/trie/la-SimpleTrie.lo `test -f 'libmaus2/trie/SimpleTrie.cpp' || echo './'`libmaus2/trie/SimpleTrie.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/trie/SimpleTrie.cpp -fPIC -DPIC -o libmaus2/trie/.libs/la-SimpleTrie.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/trie/SimpleTrie.cpp -o libmaus2/trie/la-SimpleTrie.o >/dev/null 2>&1 1 warning generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/fm/MausFmToBwaConversion.cpp -o libmaus2/fm/la-MausFmToBwaConversion.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/alignment/la-FactorMatchInfo.lo `test -f 'libmaus2/alignment/FactorMatchInfo.cpp' || echo './'`libmaus2/alignment/FactorMatchInfo.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/alignment/FactorMatchInfo.cpp -fPIC -DPIC -o libmaus2/alignment/.libs/la-FactorMatchInfo.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/alignment/FactorMatchInfo.cpp -o libmaus2/alignment/la-FactorMatchInfo.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/alignment/la-KmerInfo.lo `test -f 'libmaus2/alignment/KmerInfo.cpp' || echo './'`libmaus2/alignment/KmerInfo.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/alignment/KmerInfo.cpp -fPIC -DPIC -o libmaus2/alignment/.libs/la-KmerInfo.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bambam/parallel/la-ValidationFragment.lo `test -f 'libmaus2/bambam/parallel/ValidationFragment.cpp' || echo './'`libmaus2/bambam/parallel/ValidationFragment.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/parallel/ValidationFragment.cpp -fPIC -DPIC -o libmaus2/bambam/parallel/.libs/la-ValidationFragment.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/alignment/KmerInfo.cpp -o libmaus2/alignment/la-KmerInfo.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/bambam/parallel/la-GenericInputControlStreamInfo.lo `test -f 'libmaus2/bambam/parallel/GenericInputControlStreamInfo.cpp' || echo './'`libmaus2/bambam/parallel/GenericInputControlStreamInfo.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/parallel/GenericInputControlStreamInfo.cpp -fPIC -DPIC -o libmaus2/bambam/parallel/.libs/la-GenericInputControlStreamInfo.o In file included from libmaus2/bambam/parallel/ValidationFragment.cpp:19: In file included from ./libmaus2/bambam/parallel/ValidationFragment.hpp:22: In file included from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22: In file included from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27: In file included from ./libmaus2/bambam/BamAuxFilterVector.hpp:22: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ In file included from libmaus2/bambam/parallel/ValidationFragment.cpp:19: In file included from ./libmaus2/bambam/parallel/ValidationFragment.hpp:22: In file included from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22: In file included from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22: In file included from ./libmaus2/bambam/BamAlignment.hpp:24: In file included from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: In file included from ./libmaus2/bambam/CigarStringParser.hpp:25: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/parallel/GenericInputControlStreamInfo.cpp -o libmaus2/bambam/parallel/la-GenericInputControlStreamInfo.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/dazzler/db/la-FastaInfo.lo `test -f 'libmaus2/dazzler/db/FastaInfo.cpp' || echo './'`libmaus2/dazzler/db/FastaInfo.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/db/FastaInfo.cpp -fPIC -DPIC -o libmaus2/dazzler/db/.libs/la-FastaInfo.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/dazzler/db/la-IndexBase.lo `test -f 'libmaus2/dazzler/db/IndexBase.cpp' || echo './'`libmaus2/dazzler/db/IndexBase.cpp 3 warnings generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/db/IndexBase.cpp -fPIC -DPIC -o libmaus2/dazzler/db/.libs/la-IndexBase.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/bambam/parallel/ValidationFragment.cpp -o libmaus2/bambam/parallel/la-ValidationFragment.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/db/FastaInfo.cpp -o libmaus2/dazzler/db/la-FastaInfo.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/db/IndexBase.cpp -o libmaus2/dazzler/db/la-IndexBase.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/dazzler/db/la-DatabaseFile.lo `test -f 'libmaus2/dazzler/db/DatabaseFile.cpp' || echo './'`libmaus2/dazzler/db/DatabaseFile.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/db/DatabaseFile.cpp -fPIC -DPIC -o libmaus2/dazzler/db/.libs/la-DatabaseFile.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/dazzler/db/la-Read.lo `test -f 'libmaus2/dazzler/db/Read.cpp' || echo './'`libmaus2/dazzler/db/Read.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/db/Read.cpp -fPIC -DPIC -o libmaus2/dazzler/db/.libs/la-Read.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/dazzler/align/la-Path.lo `test -f 'libmaus2/dazzler/align/Path.cpp' || echo './'`libmaus2/dazzler/align/Path.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/Path.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-Path.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/db/Read.cpp -o libmaus2/dazzler/db/la-Read.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/Path.cpp -o libmaus2/dazzler/align/la-Path.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/dazzler/align/la-Overlap.lo `test -f 'libmaus2/dazzler/align/Overlap.cpp' || echo './'`libmaus2/dazzler/align/Overlap.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/Overlap.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-Overlap.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/aio/la-InputStreamInstance.lo `test -f 'libmaus2/aio/InputStreamInstance.cpp' || echo './'`libmaus2/aio/InputStreamInstance.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/InputStreamInstance.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-InputStreamInstance.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/db/DatabaseFile.cpp -o libmaus2/dazzler/db/la-DatabaseFile.o >/dev/null 2>&1 In file included from libmaus2/dazzler/align/Overlap.cpp:18: In file included from ./libmaus2/dazzler/align/Overlap.hpp:22: In file included from ./libmaus2/lcs/Aligner.hpp:21: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:24: warning: variable 'bpos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:14: warning: variable 'apos' set but not used [-Wunused-but-set-variable] uint64_t apos = 0, bpos = 0; ^ 2 warnings generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/dazzler/align/Overlap.cpp -o libmaus2/dazzler/align/la-Overlap.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/aio/la-OutputStreamInstance.lo `test -f 'libmaus2/aio/OutputStreamInstance.cpp' || echo './'`libmaus2/aio/OutputStreamInstance.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/OutputStreamInstance.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-OutputStreamInstance.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/aio/la-OutputStreamFactoryContainer.lo `test -f 'libmaus2/aio/OutputStreamFactoryContainer.cpp' || echo './'`libmaus2/aio/OutputStreamFactoryContainer.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/OutputStreamFactoryContainer.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-OutputStreamFactoryContainer.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeGapRequest.lo `test -f 'libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-MergeStrategyMergeGapRequest.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/OutputStreamFactoryContainer.cpp -o libmaus2/aio/la-OutputStreamFactoryContainer.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.cpp -o libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeGapRequest.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/InputStreamInstance.cpp -o libmaus2/aio/la-InputStreamInstance.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSort.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSort.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtComputeSSA.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtComputeSSA.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/aio/OutputStreamInstance.cpp -o libmaus2/aio/la-OutputStreamInstance.o >/dev/null 2>&1 In file included from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22: In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22: In file included from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24: In file included from ./libmaus2/gamma/GammaRLEncoder.hpp:29: In file included from ./libmaus2/gamma/GammaRLDecoder.hpp:28: In file included from ./libmaus2/util/IntervalTree.hpp:25: In file included from ./libmaus2/bitio/BitVector.hpp:29: ./libmaus2/rank/ERank3C.hpp:346:16: warning: variable 'mc' set but not used [-Wunused-but-set-variable] uint64_t mc = 0; // total 1 bits accu ^ libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp:576:12: warning: variable 'bc' set but not used [-Wunused-but-set-variable] uint64_t bc = 0; ^ In file included from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22: In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:37: In file included from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22: In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:334:20: warning: variable 'l_numsyms0' set but not used [-Wunused-but-set-variable] uint64_t l_numsyms0 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:339:20: warning: variable 'r_numsyms1' set but not used [-Wunused-but-set-variable] uint64_t r_numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:219:17: warning: variable 'numsyms1' set but not used [-Wunused-but-set-variable] uint64_t numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:20: warning: variable 'l_numsyms0' set but not used [-Wunused-but-set-variable] uint64_t l_numsyms0 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:20: warning: variable 'r_numsyms1' set but not used [-Wunused-but-set-variable] uint64_t r_numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:17: warning: variable 'numsyms1' set but not used [-Wunused-but-set-variable] uint64_t numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:20: warning: variable 'l_numsyms0' set but not used [-Wunused-but-set-variable] uint64_t l_numsyms0 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:20: warning: variable 'r_numsyms1' set but not used [-Wunused-but-set-variable] uint64_t r_numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:17: warning: variable 'numsyms1' set but not used [-Wunused-but-set-variable] uint64_t numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:20: warning: variable 'l_numsyms0' set but not used [-Wunused-but-set-variable] uint64_t l_numsyms0 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:20: warning: variable 'r_numsyms1' set but not used [-Wunused-but-set-variable] uint64_t r_numsyms1 = 0; ^ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:17: warning: variable 'numsyms1' set but not used [-Wunused-but-set-variable] uint64_t numsyms1 = 0; ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/timing/la-RealTimeClock.lo `test -f 'libmaus2/timing/RealTimeClock.cpp' || echo './'`libmaus2/timing/RealTimeClock.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 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-Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/gtf/la-CDS.lo `test -f 'libmaus2/gtf/CDS.cpp' || echo './'`libmaus2/gtf/CDS.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/gtf/la-Exon.lo `test -f 'libmaus2/gtf/Exon.cpp' || echo './'`libmaus2/gtf/Exon.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/gtf/CDS.cpp -fPIC -DPIC -o libmaus2/gtf/.libs/la-CDS.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/gtf/Exon.cpp -fPIC -DPIC -o libmaus2/gtf/.libs/la-Exon.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/gtf/CDS.cpp -o libmaus2/gtf/la-CDS.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 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-D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/gtf/ExonSubInfo.cpp -fPIC -DPIC -o libmaus2/gtf/.libs/la-ExonSubInfo.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/gtf/ExonSubInfo.cpp -o libmaus2/gtf/la-ExonSubInfo.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 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-fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/network/la-CurlInitObject.lo `test -f 'libmaus2/network/CurlInitObject.cpp' || echo './'`libmaus2/network/CurlInitObject.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/network/CurlInitObject.cpp -fPIC -DPIC -o libmaus2/network/.libs/la-CurlInitObject.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong 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-Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/arch/PageSize.cpp -o libmaus2/arch/la-PageSize.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c -o libmaus2/exception/la-LibMausException.lo `test -f 'libmaus2/exception/LibMausException.cpp' || echo './'`libmaus2/exception/LibMausException.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/exception/LibMausException.cpp -fPIC -DPIC -o libmaus2/exception/.libs/la-LibMausException.o /bin/bash ../libtool --tag=CXX --mode=link g++ -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:806:0 -L/lib -Wl,-z,relro -Wl,-z,now -rdynamic -o libmaus2_posix.la -rpath /usr/lib/x86_64-linux-gnu libmaus2/posix/la-PosixExecute.lo libmaus2/posix/la-PosixFunctions.lo -ldl -lz libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/x86_64-linux-gnu/crti.o /usr/bin/../lib/gcc/x86_64-linux-gnu/11/crtbeginS.o libmaus2/posix/.libs/la-PosixExecute.o libmaus2/posix/.libs/la-PosixFunctions.o -L/lib -ldl -lz -L/usr/bin/../lib/gcc/x86_64-linux-gnu/11 -L/lib/x86_64-linux-gnu -L/lib/../lib64 -L/usr/lib/x86_64-linux-gnu -L/usr/lib/llvm-13/bin/../lib -L/usr/lib -lstdc++ -lm -lc -lgcc_s -lgcc /usr/bin/../lib/gcc/x86_64-linux-gnu/11/crtendS.o /usr/lib/x86_64-linux-gnu/crtn.o -pthread -fopenmp -g -O2 -fstack-protector-strong -O3 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_posix.so.2 -o .libs/libmaus2_posix.so.2.0.806 clang: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument] clang: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument] clang: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument] libtool: link: (cd ".libs" && rm -f "libmaus2_posix.so.2" && ln -s "libmaus2_posix.so.2.0.806" "libmaus2_posix.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2_posix.so" && ln -s "libmaus2_posix.so.2.0.806" "libmaus2_posix.so") libtool: link: ar cr .libs/libmaus2_posix.a libmaus2/posix/la-PosixExecute.o libmaus2/posix/la-PosixFunctions.o libtool: link: ranlib .libs/libmaus2_posix.a libtool: link: ( cd ".libs" && rm -f "libmaus2_posix.la" && ln -s "../libmaus2_posix.la" "libmaus2_posix.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:806:0 -L/lib -Wl,-z,relro -Wl,-z,now -rdynamic -o libmaus2_demangle.la -rpath /usr/lib/x86_64-linux-gnu libmaus2/demangle/la-Demangle.lo -ldl -lz libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/exception/LibMausException.cpp -o libmaus2/exception/la-LibMausException.o >/dev/null 2>&1 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/x86_64-linux-gnu/crti.o /usr/bin/../lib/gcc/x86_64-linux-gnu/11/crtbeginS.o libmaus2/demangle/.libs/la-Demangle.o -L/lib -ldl -lz -L/usr/bin/../lib/gcc/x86_64-linux-gnu/11 -L/lib/x86_64-linux-gnu -L/lib/../lib64 -L/usr/lib/x86_64-linux-gnu -L/usr/lib/llvm-13/bin/../lib -L/usr/lib -lstdc++ -lm -lc -lgcc_s -lgcc /usr/bin/../lib/gcc/x86_64-linux-gnu/11/crtendS.o /usr/lib/x86_64-linux-gnu/crtn.o -pthread -fopenmp -g -O2 -fstack-protector-strong -O3 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_demangle.so.2 -o .libs/libmaus2_demangle.so.2.0.806 clang: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument] clang: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument] clang: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument] libtool: link: (cd ".libs" && rm -f "libmaus2_demangle.so.2" && ln -s "libmaus2_demangle.so.2.0.806" "libmaus2_demangle.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2_demangle.so" && ln -s "libmaus2_demangle.so.2.0.806" "libmaus2_demangle.so") libtool: link: ar cr .libs/libmaus2_demangle.a libmaus2/demangle/la-Demangle.o libtool: link: ranlib .libs/libmaus2_demangle.a libtool: link: ( cd ".libs" && rm -f "libmaus2_demangle.la" && ln -s "../libmaus2_demangle.la" "libmaus2_demangle.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:806:0 -L/lib -Wl,-z,relro -Wl,-z,now -rdynamic -o libmaus2_arch.la -rpath /usr/lib/x86_64-linux-gnu libmaus2/arch/la-I386Features.lo libmaus2/arch/la-CacheLineSize.lo libmaus2/arch/la-PageSize.lo -ldl -lz libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/x86_64-linux-gnu/crti.o /usr/bin/../lib/gcc/x86_64-linux-gnu/11/crtbeginS.o libmaus2/arch/.libs/la-I386Features.o libmaus2/arch/.libs/la-CacheLineSize.o libmaus2/arch/.libs/la-PageSize.o -L/lib -ldl -lz -L/usr/bin/../lib/gcc/x86_64-linux-gnu/11 -L/lib/x86_64-linux-gnu -L/lib/../lib64 -L/usr/lib/x86_64-linux-gnu -L/usr/lib/llvm-13/bin/../lib -L/usr/lib -lstdc++ -lm -lc -lgcc_s -lgcc /usr/bin/../lib/gcc/x86_64-linux-gnu/11/crtendS.o /usr/lib/x86_64-linux-gnu/crtn.o -pthread -fopenmp -g -O2 -fstack-protector-strong -O3 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_arch.so.2 -o .libs/libmaus2_arch.so.2.0.806 clang: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument] clang: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument] clang: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument] libtool: link: (cd ".libs" && rm -f "libmaus2_arch.so.2" && ln -s "libmaus2_arch.so.2.0.806" "libmaus2_arch.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2_arch.so" && ln -s "libmaus2_arch.so.2.0.806" "libmaus2_arch.so") libtool: link: ar cr .libs/libmaus2_arch.a libmaus2/arch/la-I386Features.o libmaus2/arch/la-CacheLineSize.o libmaus2/arch/la-PageSize.o libtool: link: ranlib .libs/libmaus2_arch.a libtool: link: ( cd ".libs" && rm -f "libmaus2_arch.la" && ln -s "../libmaus2_arch.la" "libmaus2_arch.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:806:0 -L/lib -Wl,-z,relro -Wl,-z,now -rdynamic -o libmaus2_stacktrace.la -rpath /usr/lib/x86_64-linux-gnu libmaus2/stacktrace/la-StackTrace.lo libmaus2/stacktrace/la-StackTraceBufferContainer.lo -ldl libmaus2_posix.la libmaus2_demangle.la -lz libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/x86_64-linux-gnu/crti.o /usr/bin/../lib/gcc/x86_64-linux-gnu/11/crtbeginS.o libmaus2/stacktrace/.libs/la-StackTrace.o libmaus2/stacktrace/.libs/la-StackTraceBufferContainer.o -Wl,-rpath -Wl,/<>/src/.libs -L/lib -ldl ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so -lz -L/usr/bin/../lib/gcc/x86_64-linux-gnu/11 -L/lib/x86_64-linux-gnu -L/lib/../lib64 -L/usr/lib/x86_64-linux-gnu -L/usr/lib/llvm-13/bin/../lib -L/usr/lib -lstdc++ -lm -lc -lgcc_s -lgcc /usr/bin/../lib/gcc/x86_64-linux-gnu/11/crtendS.o /usr/lib/x86_64-linux-gnu/crtn.o -pthread -fopenmp -g -O2 -fstack-protector-strong -O3 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_stacktrace.so.2 -o .libs/libmaus2_stacktrace.so.2.0.806 clang: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument] clang: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument] clang: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument] libtool: link: (cd ".libs" && rm -f "libmaus2_stacktrace.so.2" && ln -s "libmaus2_stacktrace.so.2.0.806" "libmaus2_stacktrace.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2_stacktrace.so" && ln -s "libmaus2_stacktrace.so.2.0.806" "libmaus2_stacktrace.so") libtool: link: ar cr .libs/libmaus2_stacktrace.a libmaus2/stacktrace/la-StackTrace.o libmaus2/stacktrace/la-StackTraceBufferContainer.o libtool: link: ranlib .libs/libmaus2_stacktrace.a libtool: link: ( cd ".libs" && rm -f "libmaus2_stacktrace.la" && ln -s "../libmaus2_stacktrace.la" "libmaus2_stacktrace.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:806:0 -L/lib -Wl,-z,relro -Wl,-z,now -rdynamic -o libmaus2_autoarray.la -rpath /usr/lib/x86_64-linux-gnu libmaus2/autoarray/la-AutoArray.lo -ldl libmaus2_stacktrace.la libmaus2_demangle.la libmaus2_arch.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:806:0 -L/lib -Wl,-z,relro -Wl,-z,now -rdynamic -o libmaus2_exception.la -rpath /usr/lib/x86_64-linux-gnu libmaus2/exception/la-LibMausException.lo -ldl libmaus2_stacktrace.la libmaus2_demangle.la -lz libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/x86_64-linux-gnu/crti.o /usr/bin/../lib/gcc/x86_64-linux-gnu/11/crtbeginS.o libmaus2/exception/.libs/la-LibMausException.o -Wl,-rpath -Wl,/<>/src/.libs -L/lib -ldl ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_demangle.so -lz -L/usr/bin/../lib/gcc/x86_64-linux-gnu/11 -L/lib/x86_64-linux-gnu -L/lib/../lib64 -L/usr/lib/x86_64-linux-gnu -L/usr/lib/llvm-13/bin/../lib -L/usr/lib -lstdc++ -lm -lc -lgcc_s -lgcc /usr/bin/../lib/gcc/x86_64-linux-gnu/11/crtendS.o /usr/lib/x86_64-linux-gnu/crtn.o -pthread -fopenmp -g -O2 -fstack-protector-strong -O3 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_exception.so.2 -o .libs/libmaus2_exception.so.2.0.806 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/x86_64-linux-gnu/crti.o /usr/bin/../lib/gcc/x86_64-linux-gnu/11/crtbeginS.o libmaus2/autoarray/.libs/la-AutoArray.o -Wl,-rpath -Wl,/<>/src/.libs -L/lib -ldl ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so -lz -L/usr/bin/../lib/gcc/x86_64-linux-gnu/11 -L/lib/x86_64-linux-gnu -L/lib/../lib64 -L/usr/lib/x86_64-linux-gnu -L/usr/lib/llvm-13/bin/../lib -L/usr/lib -lstdc++ -lm -lc -lgcc_s -lgcc /usr/bin/../lib/gcc/x86_64-linux-gnu/11/crtendS.o /usr/lib/x86_64-linux-gnu/crtn.o -pthread -fopenmp -g -O2 -fstack-protector-strong -O3 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_autoarray.so.2 -o .libs/libmaus2_autoarray.so.2.0.806 clang: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument] clang: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument] clang: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument] clang: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument] clang: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument] clang: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument] libtool: link: (cd ".libs" && rm -f "libmaus2_exception.so.2" && ln -s "libmaus2_exception.so.2.0.806" "libmaus2_exception.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2_exception.so" && ln -s "libmaus2_exception.so.2.0.806" "libmaus2_exception.so") libtool: link: (cd ".libs" && rm -f "libmaus2_autoarray.so.2" && ln -s "libmaus2_autoarray.so.2.0.806" "libmaus2_autoarray.so.2") libtool: link: ar cr .libs/libmaus2_exception.a libmaus2/exception/la-LibMausException.o libtool: link: (cd ".libs" && rm -f "libmaus2_autoarray.so" && ln -s "libmaus2_autoarray.so.2.0.806" "libmaus2_autoarray.so") libtool: link: ranlib .libs/libmaus2_exception.a libtool: link: ar cr .libs/libmaus2_autoarray.a libmaus2/autoarray/la-AutoArray.o libtool: link: ranlib .libs/libmaus2_autoarray.a libtool: link: ( cd ".libs" && rm -f "libmaus2_exception.la" && ln -s "../libmaus2_exception.la" "libmaus2_exception.la" ) libtool: link: ( cd ".libs" && rm -f "libmaus2_autoarray.la" && ln -s "../libmaus2_autoarray.la" "libmaus2_autoarray.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:806:0 -L/lib -Wl,-z,relro -Wl,-z,now -rdynamic -o libmaus2_parallel.la -rpath /usr/lib/x86_64-linux-gnu libmaus2/parallel/la-SimpleThreadWorkPackage.lo libmaus2/parallel/la-StdSemaphore.lo libmaus2/parallel/la-StdMutex.lo libmaus2/parallel/la-StdSpinLock.lo libmaus2/parallel/la-StaticInitialisation.lo -ldl libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_demangle.la libmaus2_arch.la -lz libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/x86_64-linux-gnu/crti.o /usr/bin/../lib/gcc/x86_64-linux-gnu/11/crtbeginS.o libmaus2/parallel/.libs/la-SimpleThreadWorkPackage.o libmaus2/parallel/.libs/la-StdSemaphore.o libmaus2/parallel/.libs/la-StdMutex.o libmaus2/parallel/.libs/la-StdSpinLock.o libmaus2/parallel/.libs/la-StaticInitialisation.o -Wl,-rpath -Wl,/<>/src/.libs -L/lib -ldl ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so -lz -L/usr/bin/../lib/gcc/x86_64-linux-gnu/11 -L/lib/x86_64-linux-gnu -L/lib/../lib64 -L/usr/lib/x86_64-linux-gnu -L/usr/lib/llvm-13/bin/../lib -L/usr/lib -lstdc++ -lm -lc -lgcc_s -lgcc /usr/bin/../lib/gcc/x86_64-linux-gnu/11/crtendS.o /usr/lib/x86_64-linux-gnu/crtn.o -pthread -fopenmp -g -O2 -fstack-protector-strong -O3 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_parallel.so.2 -o .libs/libmaus2_parallel.so.2.0.806 clang: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument] clang: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument] clang: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument] libtool: link: (cd ".libs" && rm -f "libmaus2_parallel.so.2" && ln -s "libmaus2_parallel.so.2.0.806" "libmaus2_parallel.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2_parallel.so" && ln -s "libmaus2_parallel.so.2.0.806" "libmaus2_parallel.so") libtool: link: ar cr .libs/libmaus2_parallel.a libmaus2/parallel/la-SimpleThreadWorkPackage.o libmaus2/parallel/la-StdSemaphore.o libmaus2/parallel/la-StdMutex.o libmaus2/parallel/la-StdSpinLock.o libmaus2/parallel/la-StaticInitialisation.o libtool: link: ranlib .libs/libmaus2_parallel.a libtool: link: ( cd ".libs" && rm -f "libmaus2_parallel.la" && ln -s "../libmaus2_parallel.la" "libmaus2_parallel.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -msse2 -mssse3 -msse4.1 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:806:0 -Wl,-z,relro -Wl,-z,now -rdynamic -o libmaus2_simd_align_128.la -rpath /usr/lib/x86_64-linux-gnu libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentConstants128.lo libmaus2/lcs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_8.lo libmaus2/lcs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_16.lo libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentX128_8.lo libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentX128_16.lo -ldl libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -msse2 -mssse3 -msse4.1 -mavx2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:806:0 -Wl,-z,relro -Wl,-z,now -rdynamic -o libmaus2_simd_align_256.la -rpath /usr/lib/x86_64-linux-gnu libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentConstants256.lo libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.lo libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.lo libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.lo libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.lo libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.lo libmaus2/lcs/simd_align_256_la-AlignmentOneAgainstManyAVX2.lo -ldl libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la -lz libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/x86_64-linux-gnu/crti.o /usr/bin/../lib/gcc/x86_64-linux-gnu/11/crtbeginS.o libmaus2/lcs/.libs/simd_align_128_la-SimdX86GlobalAlignmentConstants128.o libmaus2/lcs/.libs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_8.o libmaus2/lcs/.libs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_16.o libmaus2/lcs/.libs/simd_align_128_la-SimdX86GlobalAlignmentX128_8.o libmaus2/lcs/.libs/simd_align_128_la-SimdX86GlobalAlignmentX128_16.o -Wl,-rpath -Wl,/<>/src/.libs -ldl ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so -lz -L/usr/bin/../lib/gcc/x86_64-linux-gnu/11 -L/lib/x86_64-linux-gnu -L/lib/../lib64 -L/usr/lib/x86_64-linux-gnu -L/usr/lib/llvm-13/bin/../lib -L/lib -L/usr/lib -lstdc++ -lm -lc -lgcc_s -lgcc /usr/bin/../lib/gcc/x86_64-linux-gnu/11/crtendS.o /usr/lib/x86_64-linux-gnu/crtn.o -msse2 -mssse3 -msse4.1 -pthread -fopenmp -g -O2 -fstack-protector-strong -O3 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_simd_align_128.so.2 -o .libs/libmaus2_simd_align_128.so.2.0.806 clang: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument] clang: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument] clang: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument] libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/x86_64-linux-gnu/crti.o /usr/bin/../lib/gcc/x86_64-linux-gnu/11/crtbeginS.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentConstants256.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.o libmaus2/lcs/.libs/simd_align_256_la-AlignmentOneAgainstManyAVX2.o -Wl,-rpath -Wl,/<>/src/.libs -ldl ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so -lz -L/usr/bin/../lib/gcc/x86_64-linux-gnu/11 -L/lib/x86_64-linux-gnu -L/lib/../lib64 -L/usr/lib/x86_64-linux-gnu -L/usr/lib/llvm-13/bin/../lib -L/lib -L/usr/lib -lstdc++ -lm -lc -lgcc_s -lgcc /usr/bin/../lib/gcc/x86_64-linux-gnu/11/crtendS.o /usr/lib/x86_64-linux-gnu/crtn.o -msse2 -mssse3 -msse4.1 -mavx2 -pthread -fopenmp -g -O2 -fstack-protector-strong -O3 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_simd_align_256.so.2 -o .libs/libmaus2_simd_align_256.so.2.0.806 clang: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument] clang: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument] clang: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument] libtool: link: (cd ".libs" && rm -f "libmaus2_simd_align_128.so.2" && ln -s "libmaus2_simd_align_128.so.2.0.806" "libmaus2_simd_align_128.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2_simd_align_128.so" && ln -s "libmaus2_simd_align_128.so.2.0.806" "libmaus2_simd_align_128.so") libtool: link: ar cr .libs/libmaus2_simd_align_128.a libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentConstants128.o libmaus2/lcs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_8.o libmaus2/lcs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_16.o libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentX128_8.o libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentX128_16.o libtool: link: ranlib .libs/libmaus2_simd_align_128.a libtool: link: ( cd ".libs" && rm -f "libmaus2_simd_align_128.la" && ln -s "../libmaus2_simd_align_128.la" "libmaus2_simd_align_128.la" ) libtool: link: (cd ".libs" && rm -f "libmaus2_simd_align_256.so.2" && ln -s "libmaus2_simd_align_256.so.2.0.806" "libmaus2_simd_align_256.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2_simd_align_256.so" && ln -s "libmaus2_simd_align_256.so.2.0.806" "libmaus2_simd_align_256.so") libtool: link: ar cr .libs/libmaus2_simd_align_256.a libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentConstants256.o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.o libmaus2/lcs/simd_align_256_la-AlignmentOneAgainstManyAVX2.o libtool: link: ranlib .libs/libmaus2_simd_align_256.a libtool: link: ( cd ".libs" && rm -f "libmaus2_simd_align_256.la" && ln -s "../libmaus2_simd_align_256.la" "libmaus2_simd_align_256.la" ) 13 warnings generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSort.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link g++ -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:806:0 -L/lib -Wl,-z,relro -Wl,-z,now -rdynamic -o libmaus2.la -rpath /usr/lib/x86_64-linux-gnu libmaus2/la-StaticInitialization.lo libmaus2/bitio/la-CompactArray.lo libmaus2/rank/la-RankTable.lo libmaus2/rank/la-log2table.lo libmaus2/fastx/la-isFastQ.lo libmaus2/wavelet/la-toWaveletTreeBits.lo libmaus2/suffixsort/la-divsufsort.lo libmaus2/digest/la-md5.lo libmaus2/math/la-primes16.lo libmaus2/util/la-OutputFileNameTools.lo libmaus2/select/la-ESelectBase.lo libmaus2/bambam/la-CigarStringParser.lo libmaus2/fastx/la-Phred.lo libmaus2/lz/la-SnappyCompress.lo libmaus2/bambam/la-ReadEndsContainer.lo libmaus2/bambam/la-ReadEnds.lo libmaus2/huffman/la-IndexLoaderBase.lo libmaus2/bambam/la-BamAlignmentDecoderBase.lo libmaus2/bambam/la-StrCmpNum.lo libmaus2/huffman/la-KvInitResult.lo libmaus2/fm/la-MausFmToBwaConversion.lo libmaus2/util/la-TempFileNameGenerator.lo libmaus2/util/la-TempFileNameGeneratorState.lo libmaus2/util/la-ArgInfo.lo libmaus2/util/la-BitList.lo libmaus2/util/la-VarBitList.lo libmaus2/util/la-Concat.lo libmaus2/util/la-ConcatRequest.lo libmaus2/util/la-ConsoleColor.lo libmaus2/util/la-DynamicLoading.lo libmaus2/util/la-GetFileSize.lo libmaus2/util/la-Histogram.lo libmaus2/util/la-HistogramSet.lo libmaus2/util/la-IncreasingList.lo libmaus2/util/la-IntervalTree.lo libmaus2/util/la-GenericIntervalTree.lo libmaus2/util/la-LookupIntervalTree.lo libmaus2/digest/la-md5_interface.lo libmaus2/util/la-MemUsage.lo libmaus2/util/la-nstat.lo libmaus2/util/la-SaturatingCounter.lo libmaus2/util/la-StringSerialisation.lo libmaus2/util/la-SuccinctBorderArray.lo libmaus2/util/la-Terminal.lo libmaus2/util/la-OctetString.lo libmaus2/util/la-Utf8String.lo libmaus2/util/la-Utf8BlockIndexDecoder.lo libmaus2/util/la-Utf8BlockIndex.lo libmaus2/util/la-Utf8DecoderBuffer.lo libmaus2/util/la-Utf8DecoderWrapper.lo libmaus2/suffixtree/la-CompressedSuffixTree.lo libmaus2/bambam/la-AlignmentValidity.lo libmaus2/bambam/la-BamFlagBase.lo libmaus2/bambam/la-ReadGroup.lo libmaus2/bambam/la-DuplicationMetrics.lo libmaus2/bambam/la-BamDefaultAdapters.lo libmaus2/bambam/la-BamRange.lo libmaus2/bambam/la-BamIndexBinChunk.lo libmaus2/bambam/la-BamIndexLinearChunk.lo libmaus2/huffman/la-HuffmanTree.lo libmaus2/bambam/la-BamAlignmentDecoderInfo.lo libmaus2/lz/la-Lz4Base.lo libmaus2/lz/la-Lz4Compress.lo libmaus2/lz/la-Lz4DecoderBuffer.lo libmaus2/lz/la-lz4.lo libmaus2/fm/la-BidirectionalIndexInterval.lo libmaus2/fm/la-BidirectionalIndexIntervalSymbol.lo libmaus2/gamma/la-SparseGammaGapFileIndexDecoderEntry.lo libmaus2/fastx/la-FastALineParserLineInfo.lo libmaus2/fastx/la-FastAMatchTable.lo libmaus2/lcs/la-EditDistanceResult.lo libmaus2/fastx/la-FastABgzfIndexEntry.lo libmaus2/fastx/la-FastABgzfIndex.lo libmaus2/fastx/la-FastAIndexEntry.lo libmaus2/fastx/la-FastAIndex.lo libmaus2/hashing/la-Crc32.lo libmaus2/hashing/la-MurmurHash3.lo libmaus2/lcs/la-LocalBaseConstants.lo libmaus2/lcs/la-LocalEditDistanceResult.lo libmaus2/bambam/la-BamHeaderParserStateBase.lo libmaus2/bambam/la-GeneFlatFile.lo libmaus2/bambam/la-GeneFlatFileEntry.lo libmaus2/trie/la-SimpleTrie.lo libmaus2/bambam/la-BamStreamingMarkDuplicatesSupport.lo libmaus2/alignment/la-FactorMatchInfo.lo libmaus2/alignment/la-KmerInfo.lo libmaus2/bambam/la-SamInfoBase.lo libmaus2/digest/la-SHA1.lo libmaus2/digest/la-SHA2_224.lo libmaus2/digest/la-SHA2_256.lo libmaus2/digest/la-SHA2_384.lo libmaus2/digest/la-SHA2_512.lo libmaus2/digest/la-CRC32.lo libmaus2/digest/la-CRC32C_Core.lo libmaus2/digest/la-CRC32C.lo libmaus2/digest/la-CRC32_Core.lo libmaus2/bambam/parallel/la-ValidationFragment.lo libmaus2/bambam/parallel/la-GenericInputControlStreamInfo.lo libmaus2/fastx/la-NameInfoBase.lo libmaus2/bambam/parallel/la-RefIdInterval.lo libmaus2/fastx/la-RefPathToken.lo libmaus2/fastx/la-RefPathTokenVector.lo libmaus2/dazzler/db/la-FastaInfo.lo libmaus2/dazzler/db/la-IndexBase.lo libmaus2/dazzler/db/la-DatabaseFile.lo libmaus2/dazzler/db/la-Read.lo libmaus2/dazzler/align/la-Path.lo libmaus2/dazzler/align/la-Overlap.lo libmaus2/lcs/la-AlignmentStatistics.lo libmaus2/fastx/la-SingleWordDNABitBuffer.lo libmaus2/util/la-LongestIncreasingSubsequenceExtendedResult.lo libmaus2/lcs/la-AlignerFactory.lo libmaus2/lcs/la-BandedAlignerFactory.lo libmaus2/aio/la-InputStreamInstance.lo libmaus2/aio/la-OutputStreamInstance.lo libmaus2/aio/la-OutputStreamFactoryContainer.lo libmaus2/dazzler/align/la-TraceBlock.lo libmaus2/dazzler/align/la-ApproximateRun.lo libmaus2/suffixsort/la-BwtMergeBlockSortRequest.lo libmaus2/dazzler/align/la-OverlapMeta.lo libmaus2/dazzler/align/la-Tandem.lo libmaus2/dazzler/align/la-TandemVector.lo libmaus2/math/la-GmpInteger.lo libmaus2/math/la-GmpFloat.lo libmaus2/dazzler/align/la-TracePoint.lo libmaus2/lz/la-XzDecoder.lo libmaus2/util/la-ArgParser.lo libmaus2/fastx/la-DNAIndexMetaDataSequence.lo libmaus2/fastx/la-DNAIndexMetaData.lo libmaus2/bambam/la-PileVectorElement.lo libmaus2/bambam/la-PileQualityVectorElement.lo libmaus2/digest/la-SHA3_256.lo libmaus2/fastx/la-DNAIndexMetaDataBigBand.lo libmaus2/fastx/la-DNAIndexMetaDataBigBandBiDir.lo libmaus2/rank/la-DNARankBiDirRange.lo libmaus2/lcs/la-NNPTraceElement.lo libmaus2/lcs/la-NNPTraceContainer.lo libmaus2/lcs/la-NNPAlignResult.lo libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeGapRequest.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSort.lo libmaus2/suffixsort/bwtb3m/la-BwtComputeSSA.lo libmaus2/fastx/la-FastAToCompact4BigBand.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortResult.lo libmaus2/lz/la-ZlibInterface.lo libmaus2/suffixsort/bwtb3m/la-BwtSelectSSA.lo libmaus2/aio/la-FileRemoval.lo libmaus2/rank/la-DNARankMEM.lo libmaus2/lcs/la-ChainAddQueueElement.lo libmaus2/lcs/la-Chain.lo libmaus2/lcs/la-ChainNode.lo libmaus2/lcs/la-ChainNodeInfo.lo libmaus2/lcs/la-ChainRemoveQueueElement.lo libmaus2/lcs/la-ChainSplayTreeNode.lo libmaus2/timing/la-RealTimeClock.lo libmaus2/aio/la-PosixFdOutputStreamFactory.lo libmaus2/dazzler/align/la-OverlapHeader.lo libmaus2/bambam/la-BamAlignment.lo libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeInput.lo libmaus2/aio/la-InputOutputStreamInstance.lo libmaus2/dazzler/align/la-OverlapInfo.lo libmaus2/dazzler/align/la-OverlapDataInterface.lo libmaus2/util/la-PathTools.lo libmaus2/aio/la-OFStreamOutputStreamFactory.lo libmaus2/aio/la-PosixFdInput.lo libmaus2/lz/la-BgzfDeflateHeaderFunctions.lo libmaus2/lz/la-BgzfDeflateZStreamBase.lo libmaus2/gtf/la-CDS.lo libmaus2/gtf/la-Exon.lo libmaus2/gtf/la-ExonInfo.lo libmaus2/gtf/la-ExonInterval.lo libmaus2/gtf/la-ExonSubInfo.lo libmaus2/protein/la-Blosum62.lo libmaus2/protein/la-CodonMapper.lo libmaus2/bambam/la-ChecksumsFactory.lo libmaus2/vcf/la-VCFSortEntry.lo libmaus2/network/la-CurlInitObject.lo libmaus2/network/la-CurlOutputBlock.lo libmaus2/network/la-CurlResponseAcceptor.lo libmaus2/network/la-HttpCurlResponseAcceptor.lo libmaus2/network/la-FtpCurlResponseAcceptor.lo libmaus2/network/la-CurlObject.lo libmaus2/network/la-CurlObjectReader.lo libmaus2/network/la-CurlObjectThreadCallable.lo libmaus2/network/la-CurlInputStreamBuffer.lo libmaus2/network/la-CurlInputStream.lo libmaus2/network/la-GetHostName.lo libmaus2/aio/la-SecrecyInputStreamFactory.lo libmaus2/aio/la-SecrecyOutputStreamFactory.lo libmaus2/bambam/la-Scram.lo libmaus2/bambam/parallel/la-ScramCramEncoding.lo libmaus2/parallel/threadpool/bgzf/la-BgzfDecompressContext.lo libmaus2/parallel/threadpool/bgzf/la-BgzfCompressContext.lo -ldl -lz -lgmp -lnettle -lgpgme -lgpg-error -lassuan libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la -lz libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/x86_64-linux-gnu/crti.o /usr/bin/../lib/gcc/x86_64-linux-gnu/11/crtbeginS.o libmaus2/.libs/la-StaticInitialization.o libmaus2/bitio/.libs/la-CompactArray.o libmaus2/rank/.libs/la-RankTable.o libmaus2/rank/.libs/la-log2table.o libmaus2/fastx/.libs/la-isFastQ.o libmaus2/wavelet/.libs/la-toWaveletTreeBits.o libmaus2/suffixsort/.libs/la-divsufsort.o libmaus2/digest/.libs/la-md5.o libmaus2/math/.libs/la-primes16.o libmaus2/util/.libs/la-OutputFileNameTools.o libmaus2/select/.libs/la-ESelectBase.o libmaus2/bambam/.libs/la-CigarStringParser.o libmaus2/fastx/.libs/la-Phred.o libmaus2/lz/.libs/la-SnappyCompress.o libmaus2/bambam/.libs/la-ReadEndsContainer.o libmaus2/bambam/.libs/la-ReadEnds.o libmaus2/huffman/.libs/la-IndexLoaderBase.o libmaus2/bambam/.libs/la-BamAlignmentDecoderBase.o libmaus2/bambam/.libs/la-StrCmpNum.o libmaus2/huffman/.libs/la-KvInitResult.o libmaus2/fm/.libs/la-MausFmToBwaConversion.o libmaus2/util/.libs/la-TempFileNameGenerator.o libmaus2/util/.libs/la-TempFileNameGeneratorState.o libmaus2/util/.libs/la-ArgInfo.o libmaus2/util/.libs/la-BitList.o libmaus2/util/.libs/la-VarBitList.o libmaus2/util/.libs/la-Concat.o libmaus2/util/.libs/la-ConcatRequest.o libmaus2/util/.libs/la-ConsoleColor.o libmaus2/util/.libs/la-DynamicLoading.o libmaus2/util/.libs/la-GetFileSize.o libmaus2/util/.libs/la-Histogram.o libmaus2/util/.libs/la-HistogramSet.o libmaus2/util/.libs/la-IncreasingList.o libmaus2/util/.libs/la-IntervalTree.o libmaus2/util/.libs/la-GenericIntervalTree.o libmaus2/util/.libs/la-LookupIntervalTree.o libmaus2/digest/.libs/la-md5_interface.o libmaus2/util/.libs/la-MemUsage.o libmaus2/util/.libs/la-nstat.o libmaus2/util/.libs/la-SaturatingCounter.o libmaus2/util/.libs/la-StringSerialisation.o libmaus2/util/.libs/la-SuccinctBorderArray.o libmaus2/util/.libs/la-Terminal.o libmaus2/util/.libs/la-OctetString.o libmaus2/util/.libs/la-Utf8String.o libmaus2/util/.libs/la-Utf8BlockIndexDecoder.o libmaus2/util/.libs/la-Utf8BlockIndex.o libmaus2/util/.libs/la-Utf8DecoderBuffer.o libmaus2/util/.libs/la-Utf8DecoderWrapper.o libmaus2/suffixtree/.libs/la-CompressedSuffixTree.o libmaus2/bambam/.libs/la-AlignmentValidity.o libmaus2/bambam/.libs/la-BamFlagBase.o libmaus2/bambam/.libs/la-ReadGroup.o libmaus2/bambam/.libs/la-DuplicationMetrics.o libmaus2/bambam/.libs/la-BamDefaultAdapters.o libmaus2/bambam/.libs/la-BamRange.o libmaus2/bambam/.libs/la-BamIndexBinChunk.o libmaus2/bambam/.libs/la-BamIndexLinearChunk.o libmaus2/huffman/.libs/la-HuffmanTree.o libmaus2/bambam/.libs/la-BamAlignmentDecoderInfo.o libmaus2/lz/.libs/la-Lz4Base.o libmaus2/lz/.libs/la-Lz4Compress.o libmaus2/lz/.libs/la-Lz4DecoderBuffer.o libmaus2/lz/.libs/la-lz4.o libmaus2/fm/.libs/la-BidirectionalIndexInterval.o libmaus2/fm/.libs/la-BidirectionalIndexIntervalSymbol.o libmaus2/gamma/.libs/la-SparseGammaGapFileIndexDecoderEntry.o libmaus2/fastx/.libs/la-FastALineParserLineInfo.o libmaus2/fastx/.libs/la-FastAMatchTable.o libmaus2/lcs/.libs/la-EditDistanceResult.o libmaus2/fastx/.libs/la-FastABgzfIndexEntry.o libmaus2/fastx/.libs/la-FastABgzfIndex.o libmaus2/fastx/.libs/la-FastAIndexEntry.o libmaus2/fastx/.libs/la-FastAIndex.o libmaus2/hashing/.libs/la-Crc32.o libmaus2/hashing/.libs/la-MurmurHash3.o libmaus2/lcs/.libs/la-LocalBaseConstants.o libmaus2/lcs/.libs/la-LocalEditDistanceResult.o libmaus2/bambam/.libs/la-BamHeaderParserStateBase.o libmaus2/bambam/.libs/la-GeneFlatFile.o libmaus2/bambam/.libs/la-GeneFlatFileEntry.o libmaus2/trie/.libs/la-SimpleTrie.o libmaus2/bambam/.libs/la-BamStreamingMarkDuplicatesSupport.o libmaus2/alignment/.libs/la-FactorMatchInfo.o libmaus2/alignment/.libs/la-KmerInfo.o libmaus2/bambam/.libs/la-SamInfoBase.o libmaus2/digest/.libs/la-SHA1.o libmaus2/digest/.libs/la-SHA2_224.o libmaus2/digest/.libs/la-SHA2_256.o libmaus2/digest/.libs/la-SHA2_384.o libmaus2/digest/.libs/la-SHA2_512.o libmaus2/digest/.libs/la-CRC32.o libmaus2/digest/.libs/la-CRC32C_Core.o libmaus2/digest/.libs/la-CRC32C.o libmaus2/digest/.libs/la-CRC32_Core.o libmaus2/bambam/parallel/.libs/la-ValidationFragment.o libmaus2/bambam/parallel/.libs/la-GenericInputControlStreamInfo.o libmaus2/fastx/.libs/la-NameInfoBase.o libmaus2/bambam/parallel/.libs/la-RefIdInterval.o libmaus2/fastx/.libs/la-RefPathToken.o libmaus2/fastx/.libs/la-RefPathTokenVector.o libmaus2/dazzler/db/.libs/la-FastaInfo.o libmaus2/dazzler/db/.libs/la-IndexBase.o libmaus2/dazzler/db/.libs/la-DatabaseFile.o libmaus2/dazzler/db/.libs/la-Read.o libmaus2/dazzler/align/.libs/la-Path.o libmaus2/dazzler/align/.libs/la-Overlap.o libmaus2/lcs/.libs/la-AlignmentStatistics.o libmaus2/fastx/.libs/la-SingleWordDNABitBuffer.o libmaus2/util/.libs/la-LongestIncreasingSubsequenceExtendedResult.o libmaus2/lcs/.libs/la-AlignerFactory.o libmaus2/lcs/.libs/la-BandedAlignerFactory.o libmaus2/aio/.libs/la-InputStreamInstance.o libmaus2/aio/.libs/la-OutputStreamInstance.o libmaus2/aio/.libs/la-OutputStreamFactoryContainer.o libmaus2/dazzler/align/.libs/la-TraceBlock.o libmaus2/dazzler/align/.libs/la-ApproximateRun.o libmaus2/suffixsort/.libs/la-BwtMergeBlockSortRequest.o libmaus2/dazzler/align/.libs/la-OverlapMeta.o libmaus2/dazzler/align/.libs/la-Tandem.o libmaus2/dazzler/align/.libs/la-TandemVector.o libmaus2/math/.libs/la-GmpInteger.o libmaus2/math/.libs/la-GmpFloat.o libmaus2/dazzler/align/.libs/la-TracePoint.o libmaus2/lz/.libs/la-XzDecoder.o libmaus2/util/.libs/la-ArgParser.o libmaus2/fastx/.libs/la-DNAIndexMetaDataSequence.o libmaus2/fastx/.libs/la-DNAIndexMetaData.o libmaus2/bambam/.libs/la-PileVectorElement.o libmaus2/bambam/.libs/la-PileQualityVectorElement.o libmaus2/digest/.libs/la-SHA3_256.o libmaus2/fastx/.libs/la-DNAIndexMetaDataBigBand.o libmaus2/fastx/.libs/la-DNAIndexMetaDataBigBandBiDir.o libmaus2/rank/.libs/la-DNARankBiDirRange.o libmaus2/lcs/.libs/la-NNPTraceElement.o libmaus2/lcs/.libs/la-NNPTraceContainer.o libmaus2/lcs/.libs/la-NNPAlignResult.o libmaus2/suffixsort/bwtb3m/.libs/la-MergeStrategyMergeGapRequest.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSort.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtComputeSSA.o libmaus2/fastx/.libs/la-FastAToCompact4BigBand.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortResult.o libmaus2/lz/.libs/la-ZlibInterface.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtSelectSSA.o libmaus2/aio/.libs/la-FileRemoval.o libmaus2/rank/.libs/la-DNARankMEM.o libmaus2/lcs/.libs/la-ChainAddQueueElement.o libmaus2/lcs/.libs/la-Chain.o libmaus2/lcs/.libs/la-ChainNode.o libmaus2/lcs/.libs/la-ChainNodeInfo.o libmaus2/lcs/.libs/la-ChainRemoveQueueElement.o libmaus2/lcs/.libs/la-ChainSplayTreeNode.o libmaus2/timing/.libs/la-RealTimeClock.o libmaus2/aio/.libs/la-PosixFdOutputStreamFactory.o libmaus2/dazzler/align/.libs/la-OverlapHeader.o libmaus2/bambam/.libs/la-BamAlignment.o libmaus2/suffixsort/bwtb3m/.libs/la-MergeStrategyMergeInput.o libmaus2/aio/.libs/la-InputOutputStreamInstance.o libmaus2/dazzler/align/.libs/la-OverlapInfo.o libmaus2/dazzler/align/.libs/la-OverlapDataInterface.o libmaus2/util/.libs/la-PathTools.o libmaus2/aio/.libs/la-OFStreamOutputStreamFactory.o libmaus2/aio/.libs/la-PosixFdInput.o libmaus2/lz/.libs/la-BgzfDeflateHeaderFunctions.o libmaus2/lz/.libs/la-BgzfDeflateZStreamBase.o libmaus2/gtf/.libs/la-CDS.o libmaus2/gtf/.libs/la-Exon.o libmaus2/gtf/.libs/la-ExonInfo.o libmaus2/gtf/.libs/la-ExonInterval.o libmaus2/gtf/.libs/la-ExonSubInfo.o libmaus2/protein/.libs/la-Blosum62.o libmaus2/protein/.libs/la-CodonMapper.o libmaus2/bambam/.libs/la-ChecksumsFactory.o libmaus2/vcf/.libs/la-VCFSortEntry.o libmaus2/network/.libs/la-CurlInitObject.o libmaus2/network/.libs/la-CurlOutputBlock.o libmaus2/network/.libs/la-CurlResponseAcceptor.o libmaus2/network/.libs/la-HttpCurlResponseAcceptor.o libmaus2/network/.libs/la-FtpCurlResponseAcceptor.o libmaus2/network/.libs/la-CurlObject.o libmaus2/network/.libs/la-CurlObjectReader.o libmaus2/network/.libs/la-CurlObjectThreadCallable.o libmaus2/network/.libs/la-CurlInputStreamBuffer.o libmaus2/network/.libs/la-CurlInputStream.o libmaus2/network/.libs/la-GetHostName.o libmaus2/aio/.libs/la-SecrecyInputStreamFactory.o libmaus2/aio/.libs/la-SecrecyOutputStreamFactory.o libmaus2/bambam/.libs/la-Scram.o libmaus2/bambam/parallel/.libs/la-ScramCramEncoding.o libmaus2/parallel/threadpool/bgzf/.libs/la-BgzfDecompressContext.o libmaus2/parallel/threadpool/bgzf/.libs/la-BgzfCompressContext.o -Wl,-rpath -Wl,/<>/src/.libs -L/lib -ldl -lgmp -lnettle -lgpgme -lgpg-error -lassuan ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so -lz -L/usr/bin/../lib/gcc/x86_64-linux-gnu/11 -L/lib/x86_64-linux-gnu -L/lib/../lib64 -L/usr/lib/x86_64-linux-gnu -L/usr/lib/llvm-13/bin/../lib -L/usr/lib -lstdc++ -lm -lc -lgcc_s -lgcc /usr/bin/../lib/gcc/x86_64-linux-gnu/11/crtendS.o /usr/lib/x86_64-linux-gnu/crtn.o -pthread -fopenmp -g -O2 -fstack-protector-strong -O3 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2.so.2 -o .libs/libmaus2.so.2.0.806 clang: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument] clang: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument] clang: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument] libtool: link: (cd ".libs" && rm -f "libmaus2.so.2" && ln -s "libmaus2.so.2.0.806" "libmaus2.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2.so" && ln -s "libmaus2.so.2.0.806" "libmaus2.so") libtool: link: ar cr .libs/libmaus2.a libmaus2/la-StaticInitialization.o libmaus2/bitio/la-CompactArray.o libmaus2/rank/la-RankTable.o libmaus2/rank/la-log2table.o libmaus2/fastx/la-isFastQ.o libmaus2/wavelet/la-toWaveletTreeBits.o libmaus2/suffixsort/la-divsufsort.o libmaus2/digest/la-md5.o libmaus2/math/la-primes16.o libmaus2/util/la-OutputFileNameTools.o libmaus2/select/la-ESelectBase.o libmaus2/bambam/la-CigarStringParser.o libmaus2/fastx/la-Phred.o libmaus2/lz/la-SnappyCompress.o libmaus2/bambam/la-ReadEndsContainer.o libmaus2/bambam/la-ReadEnds.o libmaus2/huffman/la-IndexLoaderBase.o libmaus2/bambam/la-BamAlignmentDecoderBase.o libmaus2/bambam/la-StrCmpNum.o libmaus2/huffman/la-KvInitResult.o libmaus2/fm/la-MausFmToBwaConversion.o libmaus2/util/la-TempFileNameGenerator.o libmaus2/util/la-TempFileNameGeneratorState.o libmaus2/util/la-ArgInfo.o libmaus2/util/la-BitList.o libmaus2/util/la-VarBitList.o libmaus2/util/la-Concat.o libmaus2/util/la-ConcatRequest.o libmaus2/util/la-ConsoleColor.o libmaus2/util/la-DynamicLoading.o libmaus2/util/la-GetFileSize.o libmaus2/util/la-Histogram.o libmaus2/util/la-HistogramSet.o libmaus2/util/la-IncreasingList.o libmaus2/util/la-IntervalTree.o libmaus2/util/la-GenericIntervalTree.o libmaus2/util/la-LookupIntervalTree.o libmaus2/digest/la-md5_interface.o libmaus2/util/la-MemUsage.o libmaus2/util/la-nstat.o libmaus2/util/la-SaturatingCounter.o libmaus2/util/la-StringSerialisation.o libmaus2/util/la-SuccinctBorderArray.o libmaus2/util/la-Terminal.o libmaus2/util/la-OctetString.o libmaus2/util/la-Utf8String.o libmaus2/util/la-Utf8BlockIndexDecoder.o libmaus2/util/la-Utf8BlockIndex.o libmaus2/util/la-Utf8DecoderBuffer.o libmaus2/util/la-Utf8DecoderWrapper.o libmaus2/suffixtree/la-CompressedSuffixTree.o libmaus2/bambam/la-AlignmentValidity.o libmaus2/bambam/la-BamFlagBase.o libmaus2/bambam/la-ReadGroup.o libmaus2/bambam/la-DuplicationMetrics.o libmaus2/bambam/la-BamDefaultAdapters.o libmaus2/bambam/la-BamRange.o libmaus2/bambam/la-BamIndexBinChunk.o libmaus2/bambam/la-BamIndexLinearChunk.o libmaus2/huffman/la-HuffmanTree.o libmaus2/bambam/la-BamAlignmentDecoderInfo.o libmaus2/lz/la-Lz4Base.o libmaus2/lz/la-Lz4Compress.o libmaus2/lz/la-Lz4DecoderBuffer.o libmaus2/lz/la-lz4.o libmaus2/fm/la-BidirectionalIndexInterval.o libmaus2/fm/la-BidirectionalIndexIntervalSymbol.o libmaus2/gamma/la-SparseGammaGapFileIndexDecoderEntry.o libmaus2/fastx/la-FastALineParserLineInfo.o libmaus2/fastx/la-FastAMatchTable.o libmaus2/lcs/la-EditDistanceResult.o libmaus2/fastx/la-FastABgzfIndexEntry.o libmaus2/fastx/la-FastABgzfIndex.o libmaus2/fastx/la-FastAIndexEntry.o libmaus2/fastx/la-FastAIndex.o libmaus2/hashing/la-Crc32.o libmaus2/hashing/la-MurmurHash3.o libmaus2/lcs/la-LocalBaseConstants.o libmaus2/lcs/la-LocalEditDistanceResult.o libmaus2/bambam/la-BamHeaderParserStateBase.o libmaus2/bambam/la-GeneFlatFile.o libmaus2/bambam/la-GeneFlatFileEntry.o libmaus2/trie/la-SimpleTrie.o libmaus2/bambam/la-BamStreamingMarkDuplicatesSupport.o libmaus2/alignment/la-FactorMatchInfo.o libmaus2/alignment/la-KmerInfo.o libmaus2/bambam/la-SamInfoBase.o libmaus2/digest/la-SHA1.o libmaus2/digest/la-SHA2_224.o libmaus2/digest/la-SHA2_256.o libmaus2/digest/la-SHA2_384.o libmaus2/digest/la-SHA2_512.o libmaus2/digest/la-CRC32.o libmaus2/digest/la-CRC32C_Core.o libmaus2/digest/la-CRC32C.o libmaus2/digest/la-CRC32_Core.o libmaus2/bambam/parallel/la-ValidationFragment.o libmaus2/bambam/parallel/la-GenericInputControlStreamInfo.o libmaus2/fastx/la-NameInfoBase.o libmaus2/bambam/parallel/la-RefIdInterval.o libmaus2/fastx/la-RefPathToken.o libmaus2/fastx/la-RefPathTokenVector.o libmaus2/dazzler/db/la-FastaInfo.o libmaus2/dazzler/db/la-IndexBase.o libmaus2/dazzler/db/la-DatabaseFile.o libmaus2/dazzler/db/la-Read.o libmaus2/dazzler/align/la-Path.o libmaus2/dazzler/align/la-Overlap.o libmaus2/lcs/la-AlignmentStatistics.o libmaus2/fastx/la-SingleWordDNABitBuffer.o libmaus2/util/la-LongestIncreasingSubsequenceExtendedResult.o libmaus2/lcs/la-AlignerFactory.o libmaus2/lcs/la-BandedAlignerFactory.o libmaus2/aio/la-InputStreamInstance.o libmaus2/aio/la-OutputStreamInstance.o libmaus2/aio/la-OutputStreamFactoryContainer.o libmaus2/dazzler/align/la-TraceBlock.o libmaus2/dazzler/align/la-ApproximateRun.o libmaus2/suffixsort/la-BwtMergeBlockSortRequest.o libmaus2/dazzler/align/la-OverlapMeta.o libmaus2/dazzler/align/la-Tandem.o libmaus2/dazzler/align/la-TandemVector.o libmaus2/math/la-GmpInteger.o libmaus2/math/la-GmpFloat.o libmaus2/dazzler/align/la-TracePoint.o libmaus2/lz/la-XzDecoder.o libmaus2/util/la-ArgParser.o libmaus2/fastx/la-DNAIndexMetaDataSequence.o libmaus2/fastx/la-DNAIndexMetaData.o libmaus2/bambam/la-PileVectorElement.o libmaus2/bambam/la-PileQualityVectorElement.o libmaus2/digest/la-SHA3_256.o libmaus2/fastx/la-DNAIndexMetaDataBigBand.o libmaus2/fastx/la-DNAIndexMetaDataBigBandBiDir.o libmaus2/rank/la-DNARankBiDirRange.o libmaus2/lcs/la-NNPTraceElement.o libmaus2/lcs/la-NNPTraceContainer.o libmaus2/lcs/la-NNPAlignResult.o libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeGapRequest.o libmaus2/suffixsort/bwtb3m/la-BwtMergeSort.o libmaus2/suffixsort/bwtb3m/la-BwtComputeSSA.o libmaus2/fastx/la-FastAToCompact4BigBand.o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortResult.o libmaus2/lz/la-ZlibInterface.o libmaus2/suffixsort/bwtb3m/la-BwtSelectSSA.o libmaus2/aio/la-FileRemoval.o libmaus2/rank/la-DNARankMEM.o libmaus2/lcs/la-ChainAddQueueElement.o libmaus2/lcs/la-Chain.o libmaus2/lcs/la-ChainNode.o libmaus2/lcs/la-ChainNodeInfo.o libmaus2/lcs/la-ChainRemoveQueueElement.o libmaus2/lcs/la-ChainSplayTreeNode.o libmaus2/timing/la-RealTimeClock.o libmaus2/aio/la-PosixFdOutputStreamFactory.o libmaus2/dazzler/align/la-OverlapHeader.o libmaus2/bambam/la-BamAlignment.o libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeInput.o libmaus2/aio/la-InputOutputStreamInstance.o libmaus2/dazzler/align/la-OverlapInfo.o libmaus2/dazzler/align/la-OverlapDataInterface.o libmaus2/util/la-PathTools.o libmaus2/aio/la-OFStreamOutputStreamFactory.o libmaus2/aio/la-PosixFdInput.o libmaus2/lz/la-BgzfDeflateHeaderFunctions.o libmaus2/lz/la-BgzfDeflateZStreamBase.o libmaus2/gtf/la-CDS.o libmaus2/gtf/la-Exon.o libmaus2/gtf/la-ExonInfo.o libmaus2/gtf/la-ExonInterval.o libmaus2/gtf/la-ExonSubInfo.o libmaus2/protein/la-Blosum62.o libmaus2/protein/la-CodonMapper.o libmaus2/bambam/la-ChecksumsFactory.o libmaus2/vcf/la-VCFSortEntry.o libmaus2/network/la-CurlInitObject.o libmaus2/network/la-CurlOutputBlock.o libmaus2/network/la-CurlResponseAcceptor.o libmaus2/network/la-HttpCurlResponseAcceptor.o libmaus2/network/la-FtpCurlResponseAcceptor.o libmaus2/network/la-CurlObject.o libmaus2/network/la-CurlObjectReader.o libmaus2/network/la-CurlObjectThreadCallable.o libmaus2/network/la-CurlInputStreamBuffer.o libmaus2/network/la-CurlInputStream.o libmaus2/network/la-GetHostName.o libmaus2/aio/la-SecrecyInputStreamFactory.o libmaus2/aio/la-SecrecyOutputStreamFactory.o libmaus2/bambam/la-Scram.o libmaus2/bambam/parallel/la-ScramCramEncoding.o libmaus2/parallel/threadpool/bgzf/la-BgzfDecompressContext.o libmaus2/parallel/threadpool/bgzf/la-BgzfCompressContext.o libtool: link: ranlib .libs/libmaus2.a libtool: link: ( cd ".libs" && rm -f "libmaus2.la" && ln -s "../libmaus2.la" "libmaus2.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testThreadPool test/testThreadPool-testThreadPool.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 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./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testThreadPoolBgzfDecompress test/testThreadPoolBgzfDecompress-testThreadPoolBgzfDecompress.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testThreadPoolBgzfRead test/testThreadPoolBgzfRead-testThreadPoolBgzfRead.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testThreadPoolRead test/testThreadPoolRead-testThreadPoolRead.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testThreadPoolBamParse test/testThreadPoolBamParse-testThreadPoolBamParse.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testThreadPoolCramEncode test/testThreadPoolCramEncode-testThreadPoolCramEncode.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testAIO test/testAIO-testAIO.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testbitbtree test/testbitbtree-testbitbtree.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testThreadPoolBamParse test/testThreadPoolBamParse-testThreadPoolBamParse.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testAIO test/testAIO-testAIO.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testThreadPoolCramEncode test/testThreadPoolCramEncode-testThreadPoolCramEncode.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testbitbtree test/testbitbtree-testbitbtree.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testBitIO test/testBitIO-testBitIO.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testbtree test/testbtree-testbtree.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testBWTDyn test/testBWTDyn-testBWTDyn.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testBWTHufDyn test/testBWTHufDyn-testBWTHufDyn.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testbtree test/testbtree-testbtree.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testBitIO test/testBitIO-testBitIO.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testBWTDyn test/testBWTDyn-testBWTDyn.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testBWTHufDyn test/testBWTHufDyn-testBWTHufDyn.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testDivSufSort test/testDivSufSort-testDivSufSort.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testDNABitWords test/testDNABitWords-testDNABitWords.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testFastRead test/testFastRead-testFastRead.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testHuffman test/testHuffman-testHuffman.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testDNABitWords test/testDNABitWords-testDNABitWords.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testDivSufSort test/testDivSufSort-testDivSufSort.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testFastRead test/testFastRead-testFastRead.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testHuffman test/testHuffman-testHuffman.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testIsa test/testIsa-testIsa.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testkmp test/testkmp-testkmp.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testlz test/testlz-testlz.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testRank test/testRank-testRank.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testIsa test/testIsa-testIsa.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testkmp test/testkmp-testkmp.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testlz test/testlz-testlz.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testToWaveletTreeBits test/testToWaveletTreeBits-testToWaveletTreeBits.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testRank test/testRank-testRank.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testWaveletExternal test/testWaveletExternal-testWaveletExternal.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testTrie test/testTrie-testTrie.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testbandedlcs test/testbandedlcs-testbandedlcs.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testToWaveletTreeBits test/testToWaveletTreeBits-testToWaveletTreeBits.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testWaveletExternal test/testWaveletExternal-testWaveletExternal.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testbamwriter test/testbamwriter-testbamwriter.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testTrie test/testTrie-testTrie.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testbandedlcs test/testbandedlcs-testbandedlcs.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testarraydecode test/testarraydecode-testarraydecode.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testsnappy test/testsnappy-testsnappy.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testsnappyconcat test/testsnappyconcat-testsnappyconcat.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testbamwriter test/testbamwriter-testbamwriter.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testarraydecode test/testarraydecode-testarraydecode.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testgunzip test/testgunzip-testgunzip.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testsnappy test/testsnappy-testsnappy.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testsnappyconcat test/testsnappyconcat-testsnappyconcat.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testhashcollisions test/testhashcollisions-testhashcollisions.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testsimplebloomcollisions test/testsimplebloomcollisions-testsimplebloomcollisions.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testsimplehash test/testsimplehash-testsimplehash.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testgunzip test/testgunzip-testgunzip.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testsimplecountinghash test/testsimplecountinghash-testsimplecountinghash.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testhashcollisions test/testhashcollisions-testhashcollisions.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testsimplebloomcollisions 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-lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testdl test/testdl-testdl.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testsimplecountinghash test/testsimplecountinghash-testsimplecountinghash.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so 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-fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testbwtmergeinternal test/testbwtmergeinternal-testbwtmergeinternal.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testdl test/testdl-testdl.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testfastarewrite test/testfastarewrite-testfastarewrite.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testfastarecode test/testfastarecode-testfastarecode.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testdifenc test/testdifenc-testdifenc.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -ldl -Wl,-z,relro -Wl,-z,now -rdynamic -o testbamtofastq test/testbamtofastq-testbamtofastq.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz 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./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testfastarecode test/testfastarecode-testfastarecode.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testbamrange test/testbamrange-testbamrange.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testbamdamage test/testbamdamage-testbamdamage.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testgamma test/testgamma-testgamma.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testbamtofastq test/testbamtofastq-testbamtofastq.o -ldl ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testbamrange test/testbamrange-testbamrange.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testbamdamage test/testbamdamage-testbamdamage.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testcompact test/testcompact-testcompact.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testgamma test/testgamma-testgamma.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testbytetocompact test/testbytetocompact-testbytetocompact.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testscramtosam test/testscramtosam-testscramtosam.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testpacdecode test/testpacdecode-testpacdecode.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testcompact test/testcompact-testcompact.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testbytetocompact test/testbytetocompact-testbytetocompact.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testscramtosam test/testscramtosam-testscramtosam.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testutf8split test/testutf8split-testutf8split.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testpacdecode test/testpacdecode-testpacdecode.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testcirchash test/testcirchash-testcirchash.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testrmmtree test/testrmmtree-testrmmtree.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testcst test/testcst-testcst.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 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./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testrmmtree test/testrmmtree-testrmmtree.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testbamcmp test/testbamcmp-testbamcmp.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testcst test/testcst-testcst.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testbamdif test/testbamdif-testbamdif.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testqreorder test/testqreorder-testqreorder.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testfqbgzf test/testfqbgzf-testfqbgzf.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testbamcmp test/testbamcmp-testbamcmp.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testbamdif test/testbamdif-testbamdif.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testqreorder test/testqreorder-testqreorder.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall 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libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testbamindex test/testbamindex-testbamindex.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testbamrewrite test/testbamrewrite-testbamrewrite.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testfastqstream test/testfastqstream-testfastqstream.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testcompactfastrandom test/testcompactfastrandom-testcompactfastrandom.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testbamindex test/testbamindex-testbamindex.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testbamrewrite test/testbamrewrite-testbamrewrite.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testsort test/testsort-testsort.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testfastqstream test/testfastqstream-testfastqstream.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testexternalsort test/testexternalsort-testexternalsort.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ 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./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testbamheaderparser test/testbamheaderparser-testbamheaderparser.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testcollatespeed test/testcollatespeed-testcollatespeed.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testbammergecoordinate test/testbammergecoordinate-testbammergecoordinate.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testbammergecollate test/testbammergecollate-testbammergecollate.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testbammergequeryname test/testbammergequeryname-testbammergequeryname.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall 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./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testbammergecollate test/testbammergecollate-testbammergecollate.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testbammergequeryname test/testbammergequeryname-testbammergequeryname.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testbamcat test/testbamcat-testbamcat.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testautoarray2d test/testautoarray2d-testautoarray2d.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testhist test/testhist-testhist.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testfastaparse test/testfastaparse-testfastaparse.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testvalidatebamindex test/testvalidatebamindex-testvalidatebamindex.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testautoarray2d test/testautoarray2d-testautoarray2d.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testeditdistance test/testeditdistance-testeditdistance.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testhist test/testhist-testhist.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testfastaparse test/testfastaparse-testfastaparse.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testvalidatebamindex test/testvalidatebamindex-testvalidatebamindex.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testsimplethreadpool test/testsimplethreadpool-testsimplethreadpool.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testsimplethreadpoolbamdecode test/testsimplethreadpoolbamdecode-testsimplethreadpoolbamdecode.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testgaparraybyte test/testgaparraybyte-testgaparraybyte.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testeditdistance test/testeditdistance-testeditdistance.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testzlibconcat test/testzlibconcat-testzlibconcat.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testsimplethreadpool test/testsimplethreadpool-testsimplethreadpool.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testsimplethreadpoolbamdecode test/testsimplethreadpoolbamdecode-testsimplethreadpoolbamdecode.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testgaparraybyte test/testgaparraybyte-testgaparraybyte.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testsimplecompressblock test/testsimplecompressblock-testsimplecompressblock.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testfaindex test/testfaindex-testfaindex.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testfastablockrecode test/testfastablockrecode-testfastablockrecode.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testzlibconcat test/testzlibconcat-testzlibconcat.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testrlhist test/testrlhist-testrlhist.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testsimplecompressblock test/testsimplecompressblock-testsimplecompressblock.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testnumcpus test/testnumcpus-testnumcpus.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testfaindex test/testfaindex-testfaindex.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testfastablockrecode test/testfastablockrecode-testfastablockrecode.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testdiag test/testdiag-testdiag.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testlowmembamheaderparser test/testlowmembamheaderparser-testlowmembamheaderparser.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testrlhist test/testrlhist-testrlhist.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testgeneflatfile test/testgeneflatfile-testgeneflatfile.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testnumcpus test/testnumcpus-testnumcpus.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testurlinputstream test/testurlinputstream-testurlinputstream.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testdiag test/testdiag-testdiag.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testlowmembamheaderparser test/testlowmembamheaderparser-testlowmembamheaderparser.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testsimpletrie test/testsimpletrie-testsimpletrie.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testlru test/testlru-testlru.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testgeneflatfile test/testgeneflatfile-testgeneflatfile.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testbytecnt test/testbytecnt-testbytecnt.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testurlinputstream test/testurlinputstream-testurlinputstream.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o teststronglyconnectedcomponents test/teststronglyconnectedcomponents-teststronglyconnectedcomponents.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testsimpletrie test/testsimpletrie-testsimpletrie.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testlru test/testlru-testlru.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testtopologicalsorting test/testtopologicalsorting-testtopologicalsorting.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testlinebuffer test/testlinebuffer-testlinebuffer.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testbytecnt test/testbytecnt-testbytecnt.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testsamdecoder test/testsamdecoder-testsamdecoder.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/teststronglyconnectedcomponents test/teststronglyconnectedcomponents-teststronglyconnectedcomponents.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testtopologicalsorting test/testtopologicalsorting-testtopologicalsorting.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testdecimalnumberparser test/testdecimalnumberparser-testdecimalnumberparser.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testunsignedinteger test/testunsignedinteger-testunsignedinteger.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testlinebuffer test/testlinebuffer-testlinebuffer.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testmd5 test/testmd5-testmd5.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testsamdecoder test/testsamdecoder-testsamdecoder.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so 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-pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testsha test/testsha-testsha.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testparallelbamvalidation test/testparallelbamvalidation-testparallelbamvalidation.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testunsignedinteger test/testunsignedinteger-testunsignedinteger.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testparallelbamrewrite test/testparallelbamrewrite-testparallelbamrewrite.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall 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./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -L/lib -Wl,-z,relro -Wl,-z,now -rdynamic -o testparallelbamblocksort test/testparallelbamblocksort-testparallelbamblocksort.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lgmp -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testparallelbamrewrite test/testparallelbamrewrite-testparallelbamrewrite.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testmapperm test/testmapperm-testmapperm.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g 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./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lgmp -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testmapperm test/testmapperm-testmapperm.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat 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-Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testfastqtobam test/testfastqtobam-testfastqtobam.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testdazzlerdb test/testdazzlerdb-testdazzlerdb.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la 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libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testsamrecoding test/testsamrecoding-testsamrecoding.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testdazzlerdb test/testdazzlerdb-testdazzlerdb.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testfastashred test/testfastashred-testfastashred.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testfastasingleline test/testfastasingleline-testfastasingleline.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testalignerspeed test/testalignerspeed-testalignerspeed.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testdazzleralignmentrewrite test/testdazzleralignmentrewrite-testdazzleralignmentrewrite.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testxz test/testxz-testxz.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testdazzlerindex test/testdazzlerindex-testdazzlerindex.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testfastasingleline test/testfastasingleline-testfastasingleline.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testxz test/testxz-testxz.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testdazzleralignmentrewrite test/testdazzleralignmentrewrite-testdazzleralignmentrewrite.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testargparser test/testargparser-testargparser.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testdazzlerindex test/testdazzlerindex-testdazzlerindex.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testdnarank test/testdnarank-testdnarank.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testlowbits test/testlowbits-testlowbits.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testfastaexplode test/testfastaexplode-testfastaexplode.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testargparser test/testargparser-testargparser.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testdnarank test/testdnarank-testdnarank.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testlowbits test/testlowbits-testlowbits.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testfaextract test/testfaextract-testfaextract.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testfastaexplode test/testfastaexplode-testfastaexplode.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testmurmur3 test/testmurmur3-testmurmur3.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testpairalign test/testpairalign-testpairalign.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testsplaytree test/testsplaytree-testsplaytree.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testfaextract test/testfaextract-testfaextract.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testmurmur3 test/testmurmur3-testmurmur3.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testbwtconstruction test/testbwtconstruction-testbwtconstruction.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testpairalign test/testpairalign-testpairalign.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testbwtconstructionfasta test/testbwtconstructionfasta-testbwtconstructionfasta.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testsplaytree test/testsplaytree-testsplaytree.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testarrayinput test/testarrayinput-testarrayinput.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testsymcnt test/testsymcnt-testsymcnt.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testbwtconstruction test/testbwtconstruction-testbwtconstruction.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testbwtconstructionfasta test/testbwtconstructionfasta-testbwtconstructionfasta.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread /bin/bash 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./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testsymcnt test/testsymcnt-testsymcnt.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testdnasuffixtrav test/testdnasuffixtrav-testdnasuffixtrav.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testserialisedsorting test/testserialisedsorting-testserialisedsorting.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testbamnumericalindex test/testbamnumericalindex-testbamnumericalindex.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testgammapd test/testgammapd-testgammapd.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testnpl test/testnpl-testnpl.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testdnasuffixtrav test/testdnasuffixtrav-testdnasuffixtrav.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 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./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testkcnt test/testkcnt-testkcnt.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testintervaltree test/testintervaltree-testintervaltree.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testbamgetrefreg test/testbamgetrefreg-testbamgetrefreg.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testnpl test/testnpl-testnpl.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o teststringgraph test/teststringgraph-teststringgraph.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testkcnt test/testkcnt-testkcnt.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testintervaltree test/testintervaltree-testintervaltree.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testbamgetrefreg test/testbamgetrefreg-testbamgetrefreg.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testlognormal test/testlognormal-testlognormal.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testConstantSumCombinatorics test/testConstantSumCombinatorics-testConstantSumCombinatorics.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testmatrix test/testmatrix-testmatrix.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la 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test/testconvpowercache-testconvpowercache.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testlognormal test/testlognormal-testlognormal.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testConstantSumCombinatorics test/testConstantSumCombinatorics-testConstantSumCombinatorics.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testlassort test/testlassort-testlassort.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testmatrix test/testmatrix-testmatrix.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testnnplocalaligner test/testnnplocalaligner-testnnplocalaligner.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testBamRawDecoder test/testBamRawDecoder-testBamRawDecoder.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testconvpowercache test/testconvpowercache-testconvpowercache.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testlassort test/testlassort-testlassort.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testpanic test/testpanic-testpanic.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testnnplocalaligner test/testnnplocalaligner-testnnplocalaligner.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testBamRawDecoder test/testBamRawDecoder-testBamRawDecoder.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testavlset test/testavlset-testavlset.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testlibcurl test/testlibcurl-testlibcurl.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testRunLengthBitVector test/testRunLengthBitVector-testRunLengthBitVector.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testpanic test/testpanic-testpanic.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testnplself test/testnplself-testnplself.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testavlset test/testavlset-testavlset.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testlibcurl test/testlibcurl-testlibcurl.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testCopy test/testCopy-testCopy.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testRunLengthBitVector test/testRunLengthBitVector-testRunLengthBitVector.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testprotalign test/testprotalign-testprotalign.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testparasail test/testparasail-testparasail.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testnplself test/testnplself-testnplself.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -W -Wall -Wnon-virtual-dtor -mavx2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -o testavx test/testavx-testavx.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lz libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testCopy test/testCopy-testCopy.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testprotalign test/testprotalign-testprotalign.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testparasail test/testparasail-testparasail.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: g++ -W -Wall -Wnon-virtual-dtor -mavx2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++17 -pthread -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -rdynamic -o .libs/testavx test/testavx-testavx.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lz -fopenmp -pthread make[3]: Leaving directory '/<>/src' Making all in test make[3]: Entering directory '/<>/test' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/test' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test make -j4 check VERBOSE=1 make[1]: Entering directory '/<>' Making check in src make[2]: Entering directory '/<>/src' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/src' Making check in test make[2]: Entering directory '/<>/test' make check-TESTS make[3]: Entering directory '/<>/test' make[4]: Entering directory '/<>/test' PASS: testarraydecode.sh PASS: testargparser.sh PASS: testarrayinput.sh PASS: testautoarray2d.sh FAIL: testRank.sh PASS: testdnarank.sh PASS: testintervaltree.sh PASS: testnplself.sh PASS: testprotalign.sh PASS: testparasail.sh PASS: testbitbtree.sh PASS: testAIO.sh PASS: testBitIO.sh =========================================== libmaus2 2.0.806: test/test-suite.log =========================================== # TOTAL: 13 # PASS: 12 # SKIP: 0 # XFAIL: 0 # FAIL: 1 # XPASS: 0 # ERROR: 0 .. contents:: :depth: 2 FAIL: testRank.sh ================= /<>/test /<>/test /<>/test [V] testing FastRank...done. [V] testing RunLengthBitVector...testRank: test/testRank.cpp:1732: void testrl(const std::vector &): Assertion `B[i] == RLBV[i]' failed. ./testRank.sh: line 7: 23138 Aborted ../src/testRank Exiting with return code 134 FAIL testRank.sh (exit status: 134) ============================================================================ Testsuite summary for libmaus2 2.0.806 ============================================================================ # TOTAL: 13 # PASS: 12 # SKIP: 0 # XFAIL: 0 # FAIL: 1 # XPASS: 0 # ERROR: 0 ============================================================================ See test/test-suite.log Please report to germant@miltenyibiotec.de ============================================================================ make[4]: *** [Makefile:714: test-suite.log] Error 1 make[4]: Leaving directory '/<>/test' make[3]: *** [Makefile:822: check-TESTS] Error 2 make[3]: Leaving directory '/<>/test' make[2]: *** [Makefile:978: check-am] Error 2 make[2]: Leaving directory '/<>/test' make[1]: *** [Makefile:681: check-recursive] Error 1 make[1]: Leaving directory '/<>' dh_auto_test: error: make -j4 check VERBOSE=1 returned exit code 2 make: *** [debian/rules:16: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2021-10-26T18:50:33Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 1292284 Build-Time: 1176 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 10 Job: libmaus2_2.0.806+ds-1 Machine Architecture: amd64 Package: libmaus2 Package-Time: 1208 Source-Version: 2.0.806+ds-1 Space: 1292284 Status: attempted Version: 2.0.806+ds-1 -------------------------------------------------------------------------------- Finished at 2021-10-26T18:50:33Z Build needed 00:20:08, 1292284k disk space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 1209.695367035s DC-Time-Estimation: 1209.695367035 versus expected 1 (r/m: 1208.695367035 ; m: 1.0)