DC-Build-Header: openmm 7.6.0+dfsg-1 / 2021-10-26 20:25:13 +0000 DC-Task: type:rebuild-binarch-only source:openmm version:7.6.0+dfsg-1 chroot:unstable esttime:1396 logfile:/tmp/openmm_7.6.0+dfsg-1_unstable_clang13.log modes:clang13:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --no-run-lintian --chroot-setup-commands=/tmp/clang13 openmm_7.6.0+dfsg-1' sbuild (Debian sbuild) 0.78.1 (09 February 2019) on ip-172-31-3-154.eu-central-1.compute.internal +==============================================================================+ | openmm 7.6.0+dfsg-1 (amd64) Tue, 26 Oct 2021 20:25:13 +0000 | +==============================================================================+ Package: openmm Version: 7.6.0+dfsg-1 Source Version: 7.6.0+dfsg-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-f3238790-03a6-4c71-9162-b4b596fae0cc' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang13 ------------ + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=13 + echo 'Install of clang-13' Install of clang-13 + apt-get update Get:1 http://127.0.0.1:12990/debian sid InRelease [165 kB] Get:2 http://127.0.0.1:12990/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://127.0.0.1:12990/debian sid/main Sources T-2021-10-26-1401.46-F-2021-10-26-0202.15.pdiff [34.5 kB] Get:4 http://127.0.0.1:12990/debian sid/main Sources T-2021-10-26-1401.46-F-2021-10-26-0202.15.pdiff [34.5 kB] Get:5 http://127.0.0.1:12990/debian sid/main amd64 Packages T-2021-10-26-1401.46-F-2021-10-26-0202.15.pdiff [38.7 kB] Get:5 http://127.0.0.1:12990/debian sid/main amd64 Packages T-2021-10-26-1401.46-F-2021-10-26-0202.15.pdiff [38.7 kB] Get:6 http://127.0.0.1:12990/debian sid/main Translation-en [6585 kB] Fetched 6951 kB in 3s (2642 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-13 libomp-13-dev libobjc-9-dev Reading package lists... Building dependency tree... The following additional packages will be installed: lib32gcc-s1 lib32stdc++6 libasan5 libbsd0 libc6-i386 libclang-common-13-dev libclang-cpp13 libclang1-13 libedit2 libgc1 libgcc-9-dev libicu67 libllvm13 libmd0 libobjc-11-dev libobjc4 libomp5-13 libxml2 libz3-4 Suggested packages: clang-13-doc libomp-13-doc Recommended packages: llvm-13-dev python3 The following NEW packages will be installed: clang-13 lib32gcc-s1 lib32stdc++6 libasan5 libbsd0 libc6-i386 libclang-common-13-dev libclang-cpp13 libclang1-13 libedit2 libgc1 libgcc-9-dev libicu67 libllvm13 libmd0 libobjc-11-dev libobjc-9-dev libobjc4 libomp-13-dev libomp5-13 libxml2 libz3-4 0 upgraded, 22 newly installed, 0 to remove and 0 not upgraded. Need to get 68.5 MB of archives. After this operation, 379 MB of additional disk space will be used. Get:1 http://127.0.0.1:12990/debian sid/main amd64 libmd0 amd64 1.0.4-1 [29.6 kB] Get:2 http://127.0.0.1:12990/debian sid/main amd64 libbsd0 amd64 0.11.3-1 [108 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 libedit2 amd64 3.1-20210910-1 [97.5 kB] Get:4 http://127.0.0.1:12990/debian sid/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:5 http://127.0.0.1:12990/debian sid/main amd64 libxml2 amd64 2.9.12+dfsg-5 [696 kB] Get:6 http://127.0.0.1:12990/debian sid/main amd64 libz3-4 amd64 4.8.12-1+b1 [6997 kB] Get:7 http://127.0.0.1:12990/debian sid/main amd64 libllvm13 amd64 1:13.0.0-8 [19.7 MB] Get:8 http://127.0.0.1:12990/debian sid/main amd64 libclang-cpp13 amd64 1:13.0.0-8 [10.5 MB] Get:9 http://127.0.0.1:12990/debian sid/main amd64 libgc1 amd64 1:8.0.4-3 [239 kB] Get:10 http://127.0.0.1:12990/debian sid/main amd64 libobjc4 amd64 11.2.0-10 [43.2 kB] Get:11 http://127.0.0.1:12990/debian sid/main amd64 libobjc-11-dev amd64 11.2.0-10 [170 kB] Get:12 http://127.0.0.1:12990/debian sid/main amd64 libc6-i386 amd64 2.32-4 [2624 kB] Get:13 http://127.0.0.1:12990/debian sid/main amd64 lib32gcc-s1 amd64 11.2.0-10 [49.9 kB] Get:14 http://127.0.0.1:12990/debian sid/main amd64 lib32stdc++6 amd64 11.2.0-10 [601 kB] Get:15 http://127.0.0.1:12990/debian sid/main amd64 libclang-common-13-dev amd64 1:13.0.0-8 [5730 kB] Get:16 http://127.0.0.1:12990/debian sid/main amd64 libclang1-13 amd64 1:13.0.0-8 [6093 kB] Get:17 http://127.0.0.1:12990/debian sid/main amd64 clang-13 amd64 1:13.0.0-8 [119 kB] Get:18 http://127.0.0.1:12990/debian sid/main amd64 libasan5 amd64 9.4.0-3 [2734 kB] Get:19 http://127.0.0.1:12990/debian sid/main amd64 libgcc-9-dev amd64 9.4.0-3 [2343 kB] Get:20 http://127.0.0.1:12990/debian sid/main amd64 libobjc-9-dev amd64 9.4.0-3 [219 kB] Get:21 http://127.0.0.1:12990/debian sid/main amd64 libomp5-13 amd64 1:13.0.0-8 [377 kB] Get:22 http://127.0.0.1:12990/debian sid/main amd64 libomp-13-dev amd64 1:13.0.0-8 [482 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 68.5 MB in 0s (156 MB/s) Selecting previously unselected package libmd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12431 files and directories currently installed.) Preparing to unpack .../00-libmd0_1.0.4-1_amd64.deb ... Unpacking libmd0:amd64 (1.0.4-1) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../01-libbsd0_0.11.3-1_amd64.deb ... Unpacking libbsd0:amd64 (0.11.3-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../02-libedit2_3.1-20210910-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20210910-1) ... Selecting previously unselected package libicu67:amd64. Preparing to unpack .../03-libicu67_67.1-7_amd64.deb ... Unpacking libicu67:amd64 (67.1-7) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../04-libxml2_2.9.12+dfsg-5_amd64.deb ... Unpacking libxml2:amd64 (2.9.12+dfsg-5) ... Selecting previously unselected package libz3-4:amd64. Preparing to unpack .../05-libz3-4_4.8.12-1+b1_amd64.deb ... Unpacking libz3-4:amd64 (4.8.12-1+b1) ... Selecting previously unselected package libllvm13:amd64. Preparing to unpack .../06-libllvm13_1%3a13.0.0-8_amd64.deb ... Unpacking libllvm13:amd64 (1:13.0.0-8) ... Selecting previously unselected package libclang-cpp13. Preparing to unpack .../07-libclang-cpp13_1%3a13.0.0-8_amd64.deb ... Unpacking libclang-cpp13 (1:13.0.0-8) ... Selecting previously unselected package libgc1:amd64. Preparing to unpack .../08-libgc1_1%3a8.0.4-3_amd64.deb ... Unpacking libgc1:amd64 (1:8.0.4-3) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../09-libobjc4_11.2.0-10_amd64.deb ... Unpacking libobjc4:amd64 (11.2.0-10) ... Selecting previously unselected package libobjc-11-dev:amd64. Preparing to unpack .../10-libobjc-11-dev_11.2.0-10_amd64.deb ... Unpacking libobjc-11-dev:amd64 (11.2.0-10) ... Selecting previously unselected package libc6-i386. Preparing to unpack .../11-libc6-i386_2.32-4_amd64.deb ... Unpacking libc6-i386 (2.32-4) ... Selecting previously unselected package lib32gcc-s1. Preparing to unpack .../12-lib32gcc-s1_11.2.0-10_amd64.deb ... Unpacking lib32gcc-s1 (11.2.0-10) ... Selecting previously unselected package lib32stdc++6. Preparing to unpack .../13-lib32stdc++6_11.2.0-10_amd64.deb ... Unpacking lib32stdc++6 (11.2.0-10) ... Selecting previously unselected package libclang-common-13-dev. Preparing to unpack .../14-libclang-common-13-dev_1%3a13.0.0-8_amd64.deb ... Unpacking libclang-common-13-dev (1:13.0.0-8) ... Selecting previously unselected package libclang1-13. Preparing to unpack .../15-libclang1-13_1%3a13.0.0-8_amd64.deb ... Unpacking libclang1-13 (1:13.0.0-8) ... Selecting previously unselected package clang-13. Preparing to unpack .../16-clang-13_1%3a13.0.0-8_amd64.deb ... Unpacking clang-13 (1:13.0.0-8) ... Selecting previously unselected package libasan5:amd64. Preparing to unpack .../17-libasan5_9.4.0-3_amd64.deb ... Unpacking libasan5:amd64 (9.4.0-3) ... Selecting previously unselected package libgcc-9-dev:amd64. Preparing to unpack .../18-libgcc-9-dev_9.4.0-3_amd64.deb ... Unpacking libgcc-9-dev:amd64 (9.4.0-3) ... Selecting previously unselected package libobjc-9-dev:amd64. Preparing to unpack .../19-libobjc-9-dev_9.4.0-3_amd64.deb ... Unpacking libobjc-9-dev:amd64 (9.4.0-3) ... Selecting previously unselected package libomp5-13:amd64. Preparing to unpack .../20-libomp5-13_1%3a13.0.0-8_amd64.deb ... Unpacking libomp5-13:amd64 (1:13.0.0-8) ... Selecting previously unselected package libomp-13-dev. Preparing to unpack .../21-libomp-13-dev_1%3a13.0.0-8_amd64.deb ... Unpacking libomp-13-dev (1:13.0.0-8) ... Setting up libicu67:amd64 (67.1-7) ... Setting up libasan5:amd64 (9.4.0-3) ... Setting up libz3-4:amd64 (4.8.12-1+b1) ... Setting up libgc1:amd64 (1:8.0.4-3) ... Setting up libmd0:amd64 (1.0.4-1) ... Setting up libc6-i386 (2.32-4) ... Setting up libomp5-13:amd64 (1:13.0.0-8) ... Setting up libbsd0:amd64 (0.11.3-1) ... Setting up libxml2:amd64 (2.9.12+dfsg-5) ... Setting up libedit2:amd64 (3.1-20210910-1) ... Setting up libobjc4:amd64 (11.2.0-10) ... Setting up libgcc-9-dev:amd64 (9.4.0-3) ... Setting up lib32gcc-s1 (11.2.0-10) ... Setting up lib32stdc++6 (11.2.0-10) ... Setting up libllvm13:amd64 (1:13.0.0-8) ... Setting up libobjc-9-dev:amd64 (9.4.0-3) ... Setting up libclang-common-13-dev (1:13.0.0-8) ... Setting up libomp-13-dev (1:13.0.0-8) ... Setting up libobjc-11-dev:amd64 (11.2.0-10) ... Setting up libclang1-13 (1:13.0.0-8) ... Setting up libclang-cpp13 (1:13.0.0-8) ... Setting up clang-13 (1:13.0.0-8) ... Processing triggers for libc-bin (2.32-4) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6 7 8 9 10 11' + cd /usr/bin + for VERSION in $VERSIONS + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-13 g++-4.6 + ln -s clang-13 gcc-4.6 + ln -s clang-13 cpp-4.6 + ln -s clang-13 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-13 g++-4.7 + ln -s clang-13 gcc-4.7 + ln -s clang-13 cpp-4.7 + ln -s clang-13 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-13 g++-4.8 + ln -s clang-13 gcc-4.8 + ln -s clang-13 cpp-4.8 + ln -s clang-13 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-13 g++-4.9 + ln -s clang-13 gcc-4.9 + ln -s clang-13 cpp-4.9 + ln -s clang-13 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-13 g++-5 + ln -s clang-13 gcc-5 + ln -s clang-13 cpp-5 + ln -s clang-13 gcc + echo 'gcc-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-13 g++-6 + ln -s clang-13 gcc-6 + ln -s clang-13 cpp-6 + ln -s clang-13 gcc + echo 'gcc-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-7 gcc-7 cpp-7 gcc + ln -s clang++-13 g++-7 + ln -s clang-13 gcc-7 + ln -s clang-13 cpp-7 + ln -s clang-13 gcc + echo 'gcc-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-8 gcc-8 cpp-8 gcc + ln -s clang++-13 g++-8 + ln -s clang-13 gcc-8 + ln -s clang-13 cpp-8 + ln -s clang-13 gcc + echo 'gcc-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-9 gcc-9 cpp-9 gcc + ln -s clang++-13 g++-9 + ln -s clang-13 gcc-9 + ln -s clang-13 cpp-9 + ln -s clang-13 gcc + echo 'gcc-9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-10 gcc-10 cpp-10 gcc + ln -s clang++-13 g++-10 + ln -s clang-13 gcc-10 + ln -s clang-13 cpp-10 + ln -s clang-13 gcc + echo 'gcc-10 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-10 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-10 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-10 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-11 gcc-11 cpp-11 gcc + ln -s clang++-13 g++-11 + ln -s clang-13 gcc-11 + ln -s clang-13 cpp-11 + ln -s clang-13 gcc + echo 'gcc-11 hold' + dpkg --set-selections + echo 'g++-11 hold' + dpkg --set-selections + cd - /build/openmm-ItVaKO + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang + cd /usr/bin/ + rm -f clang++ clang + ln -s clang-13 clang++ + ln -s clang-13 clang + clang++ --version Debian clang version 13.0.0-8 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/bin + clang --version Debian clang version 13.0.0-8 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/bin + cd - /build/openmm-ItVaKO + apt install --yes --no-install-recommends --force-yes qt5-qmake WARNING: apt does not have a stable CLI interface. Use with caution in scripts. Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: qt5-qmake-bin qtchooser The following NEW packages will be installed: qt5-qmake qt5-qmake-bin qtchooser 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 1322 kB of archives. After this operation, 4914 kB of additional disk space will be used. Get:1 http://127.0.0.1:12990/debian sid/main amd64 qt5-qmake-bin amd64 5.15.2+dfsg-12 [1046 kB] Get:2 http://127.0.0.1:12990/debian sid/main amd64 qtchooser amd64 66-2 [26.3 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 qt5-qmake amd64 5.15.2+dfsg-12 [249 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1322 kB in 0s (56.8 MB/s) Selecting previously unselected package qt5-qmake-bin. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13528 files and directories currently installed.) Preparing to unpack .../qt5-qmake-bin_5.15.2+dfsg-12_amd64.deb ... Unpacking qt5-qmake-bin (5.15.2+dfsg-12) ... Selecting previously unselected package qtchooser. Preparing to unpack .../qtchooser_66-2_amd64.deb ... Unpacking qtchooser (66-2) ... Selecting previously unselected package qt5-qmake:amd64. Preparing to unpack .../qt5-qmake_5.15.2+dfsg-12_amd64.deb ... Unpacking qt5-qmake:amd64 (5.15.2+dfsg-12) ... Setting up qt5-qmake-bin (5.15.2+dfsg-12) ... Setting up qtchooser (66-2) ... Setting up qt5-qmake:amd64 (5.15.2+dfsg-12) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + cp /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-clang/qmake.conf /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-clang/qplatformdefs.h /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++/ + ls -al /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++/ total 16 drwxr-xr-x 2 root root 4096 Oct 26 20:25 . drwxr-xr-x 76 root root 4096 Oct 26 20:25 .. -rw-r--r-- 1 root root 276 Oct 26 20:25 qmake.conf -rw-r--r-- 1 root root 3218 Oct 26 20:25 qplatformdefs.h + cat /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++/qmake.conf # # qmake configuration for linux-clang # MAKEFILE_GENERATOR = UNIX CONFIG += incremental QMAKE_INCREMENTAL_STYLE = sublib include(../common/linux.conf) include(../common/gcc-base-unix.conf) include(../common/clang.conf) QMAKE_LFLAGS += -ccc-gcc-name g++ load(qt_config) + export QMAKESPEC=/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-clang/ + QMAKESPEC=/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-clang/ + sed -i -e 's|compare_problem(2,|compare_problem(0,|g' /usr/bin/dpkg-gensymbols + sed -i -e 's|compare_problem(1,|compare_problem(0,|g' /usr/bin/dpkg-gensymbols + grep 'compare_problem(' /usr/bin/dpkg-gensymbols compare_problem(4, g_('new libraries appeared in the symbols file: %s'), "@libs"); compare_problem(3, g_('some libraries disappeared in the symbols file: %s'), "@libs"); compare_problem(0, g_('some new symbols appeared in the symbols file: %s'), compare_problem(0, g_('some symbols or patterns disappeared in the symbols file: %s'), I: Finished running '/tmp/clang13'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/openmm-ItVaKO/resolver-5v5933' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:12990/debian sid InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'openmm' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/debichem-team/openmm.git Please use: git clone https://salsa.debian.org/debichem-team/openmm.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 10.9 MB of source archives. Get:1 http://127.0.0.1:12990/debian sid/main openmm 7.6.0+dfsg-1 (dsc) [2314 B] Get:2 http://127.0.0.1:12990/debian sid/main openmm 7.6.0+dfsg-1 (tar) [10.9 MB] Get:3 http://127.0.0.1:12990/debian sid/main openmm 7.6.0+dfsg-1 (diff) [14.4 kB] Fetched 10.9 MB in 0s (94.9 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/openmm-ItVaKO/openmm-7.6.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/openmm-ItVaKO' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: cmake, cython3, debhelper-compat (= 13), dh-python, doxygen, ocl-icd-libopencl1, python3-dev:any, python3-numpy, python3-pytest, python3-scipy, swig, build-essential, fakeroot Filtered Build-Depends: cmake, cython3, debhelper-compat (= 13), dh-python, doxygen, ocl-icd-libopencl1, python3-dev:any, python3-numpy, python3-pytest, python3-scipy, swig, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [443 B] Get:5 copy:/<>/apt_archive ./ Packages [515 B] Fetched 1915 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data cython3 debhelper dh-autoreconf dh-elpa-helper dh-python dh-strip-nondeterminism doxygen dwz emacsen-common file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libblas3 libbrotli1 libclang-cpp11 libclang1-11 libcurl4 libdebhelper-perl libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgfortran5 libjs-jquery libjs-sphinxdoc libjs-underscore libjsoncpp24 liblapack3 liblbfgsb0 libldap-2.4-2 libllvm11 libmagic-mgc libmagic1 libmpdec3 libncurses6 libncursesw6 libnghttp2-14 libpipeline1 libprocps8 libpsl5 libpython3-dev libpython3-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib libreadline8 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsqlite3-0 libssh2-1 libsub-override-perl libtool libuchardet0 libuv1 libxapian30 m4 man-db media-types ocl-icd-libopencl1 po-debconf procps python3 python3-attr python3-decorator python3-dev python3-distutils python3-importlib-metadata python3-iniconfig python3-lib2to3 python3-minimal python3-more-itertools python3-numpy python3-packaging python3-pkg-resources python3-pluggy python3-py python3-pyparsing python3-pytest python3-scipy python3-six python3-toml python3-zipp python3.9 python3.9-dev python3.9-minimal readline-common sensible-utils swig swig4.0 zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc cmake-doc ninja-build cython-doc dh-make flit doxygen-latex doxygen-doc doxygen-gui graphviz gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libtool-doc gfortran | fortran95-compiler gcj-jdk xapian-tools m4-doc apparmor less www-browser opencl-icd libmail-box-perl python3-doc python3-tk python3-venv python-attr-doc gfortran python-numpy-doc python3-numpy-dbg python3-setuptools subversion python-pyparsing-doc python-scipy-doc python3.9-venv python3.9-doc binfmt-support readline-doc swig-doc swig-examples swig4.0-examples swig4.0-doc Recommended packages: curl | wget | lynx ca-certificates libarchive-cpio-perl javascript-common libldap-common libgpm2 publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl psmisc python3-pygments python3-pil The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data cython3 debhelper dh-autoreconf dh-elpa-helper dh-python dh-strip-nondeterminism doxygen dwz emacsen-common file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libblas3 libbrotli1 libclang-cpp11 libclang1-11 libcurl4 libdebhelper-perl libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgfortran5 libjs-jquery libjs-sphinxdoc libjs-underscore libjsoncpp24 liblapack3 liblbfgsb0 libldap-2.4-2 libllvm11 libmagic-mgc libmagic1 libmpdec3 libncurses6 libncursesw6 libnghttp2-14 libpipeline1 libprocps8 libpsl5 libpython3-dev libpython3-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib libreadline8 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsqlite3-0 libssh2-1 libsub-override-perl libtool libuchardet0 libuv1 libxapian30 m4 man-db media-types ocl-icd-libopencl1 po-debconf procps python3 python3-attr python3-decorator python3-dev python3-distutils python3-importlib-metadata python3-iniconfig python3-lib2to3 python3-minimal python3-more-itertools python3-numpy python3-packaging python3-pkg-resources python3-pluggy python3-py python3-pyparsing python3-pytest python3-scipy python3-six python3-toml python3-zipp python3.9 python3.9-dev python3.9-minimal readline-common sbuild-build-depends-main-dummy sensible-utils swig swig4.0 zlib1g-dev 0 upgraded, 106 newly installed, 0 to remove and 0 not upgraded. Need to get 96.8 MB of archives. After this operation, 403 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [948 B] Get:2 http://127.0.0.1:12990/debian sid/main amd64 bsdextrautils amd64 2.37.2-4 [143 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://127.0.0.1:12990/debian sid/main amd64 groff-base amd64 1.22.4-7 [935 kB] Get:5 http://127.0.0.1:12990/debian sid/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://127.0.0.1:12990/debian sid/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get:7 http://127.0.0.1:12990/debian sid/main amd64 libpython3.9-minimal amd64 3.9.7-4 [804 kB] Get:8 http://127.0.0.1:12990/debian sid/main amd64 libexpat1 amd64 2.4.1-3 [104 kB] Get:9 http://127.0.0.1:12990/debian sid/main amd64 python3.9-minimal amd64 3.9.7-4 [1963 kB] Get:10 http://127.0.0.1:12990/debian sid/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get:11 http://127.0.0.1:12990/debian sid/main amd64 media-types all 4.0.0 [30.3 kB] Get:12 http://127.0.0.1:12990/debian sid/main amd64 libmpdec3 amd64 2.5.1-2 [87.8 kB] Get:13 http://127.0.0.1:12990/debian sid/main amd64 libncursesw6 amd64 6.2+20210905-1 [133 kB] Get:14 http://127.0.0.1:12990/debian sid/main amd64 readline-common all 8.1-2 [73.8 kB] Get:15 http://127.0.0.1:12990/debian sid/main amd64 libreadline8 amd64 8.1-2 [168 kB] Get:16 http://127.0.0.1:12990/debian sid/main amd64 libsqlite3-0 amd64 3.36.0-2 [815 kB] Get:17 http://127.0.0.1:12990/debian sid/main amd64 libpython3.9-stdlib amd64 3.9.7-4 [1688 kB] Get:18 http://127.0.0.1:12990/debian sid/main amd64 python3.9 amd64 3.9.7-4 [480 kB] Get:19 http://127.0.0.1:12990/debian sid/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get:20 http://127.0.0.1:12990/debian sid/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get:21 http://127.0.0.1:12990/debian sid/main amd64 libncurses6 amd64 6.2+20210905-1 [102 kB] Get:22 http://127.0.0.1:12990/debian sid/main amd64 libprocps8 amd64 2:3.3.17-5 [63.9 kB] Get:23 http://127.0.0.1:12990/debian sid/main amd64 procps amd64 2:3.3.17-5 [502 kB] Get:24 http://127.0.0.1:12990/debian sid/main amd64 sensible-utils all 0.0.17 [21.5 kB] Get:25 http://127.0.0.1:12990/debian sid/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get:26 http://127.0.0.1:12990/debian sid/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get:27 http://127.0.0.1:12990/debian sid/main amd64 file amd64 1:5.39-3 [69.1 kB] Get:28 http://127.0.0.1:12990/debian sid/main amd64 gettext-base amd64 0.21-4 [175 kB] Get:29 http://127.0.0.1:12990/debian sid/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get:30 http://127.0.0.1:12990/debian sid/main amd64 m4 amd64 1.4.18-5 [204 kB] Get:31 http://127.0.0.1:12990/debian sid/main amd64 autoconf all 2.71-2 [343 kB] Get:32 http://127.0.0.1:12990/debian sid/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get:33 http://127.0.0.1:12990/debian sid/main amd64 automake all 1:1.16.5-1 [823 kB] Get:34 http://127.0.0.1:12990/debian sid/main amd64 autopoint all 0.21-4 [510 kB] Get:35 http://127.0.0.1:12990/debian sid/main amd64 libarchive13 amd64 3.4.3-2+b1 [343 kB] Get:36 http://127.0.0.1:12990/debian sid/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get:37 http://127.0.0.1:12990/debian sid/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1 [69.1 kB] Get:38 http://127.0.0.1:12990/debian sid/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1 [106 kB] Get:39 http://127.0.0.1:12990/debian sid/main amd64 libldap-2.4-2 amd64 2.4.59+dfsg-1 [232 kB] Get:40 http://127.0.0.1:12990/debian sid/main amd64 libnghttp2-14 amd64 1.43.0-1 [77.1 kB] Get:41 http://127.0.0.1:12990/debian sid/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:42 http://127.0.0.1:12990/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:43 http://127.0.0.1:12990/debian sid/main amd64 libssh2-1 amd64 1.10.0-2 [178 kB] Get:44 http://127.0.0.1:12990/debian sid/main amd64 libcurl4 amd64 7.74.0-1.3+b1 [341 kB] Get:45 http://127.0.0.1:12990/debian sid/main amd64 libjsoncpp24 amd64 1.9.4-5 [78.8 kB] Get:46 http://127.0.0.1:12990/debian sid/main amd64 librhash0 amd64 1.4.2-1 [129 kB] Get:47 http://127.0.0.1:12990/debian sid/main amd64 libuv1 amd64 1.42.0-1 [135 kB] Get:48 http://127.0.0.1:12990/debian sid/main amd64 dh-elpa-helper all 2.0.9 [11.2 kB] Get:49 http://127.0.0.1:12990/debian sid/main amd64 emacsen-common all 3.0.4 [19.3 kB] Get:50 http://127.0.0.1:12990/debian sid/main amd64 cmake-data all 3.21.3-5 [1878 kB] Get:51 http://127.0.0.1:12990/debian sid/main amd64 cmake amd64 3.21.3-5 [7907 kB] Get:52 http://127.0.0.1:12990/debian sid/main amd64 cython3 amd64 0.29.24-1 [1314 kB] Get:53 http://127.0.0.1:12990/debian sid/main amd64 libdebhelper-perl all 13.5.2 [192 kB] Get:54 http://127.0.0.1:12990/debian sid/main amd64 libtool all 2.4.6-15 [513 kB] Get:55 http://127.0.0.1:12990/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:56 http://127.0.0.1:12990/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:57 http://127.0.0.1:12990/debian sid/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:58 http://127.0.0.1:12990/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.12.0-2 [26.3 kB] Get:59 http://127.0.0.1:12990/debian sid/main amd64 dh-strip-nondeterminism all 1.12.0-2 [15.5 kB] Get:60 http://127.0.0.1:12990/debian sid/main amd64 libelf1 amd64 0.185-2 [172 kB] Get:61 http://127.0.0.1:12990/debian sid/main amd64 dwz amd64 0.14-1 [98.3 kB] Get:62 http://127.0.0.1:12990/debian sid/main amd64 gettext amd64 0.21-4 [1311 kB] Get:63 http://127.0.0.1:12990/debian sid/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:64 http://127.0.0.1:12990/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:65 http://127.0.0.1:12990/debian sid/main amd64 debhelper all 13.5.2 [1056 kB] Get:66 http://127.0.0.1:12990/debian sid/main amd64 python3-lib2to3 all 3.9.7-1 [79.4 kB] Get:67 http://127.0.0.1:12990/debian sid/main amd64 python3-distutils all 3.9.7-1 [146 kB] Get:68 http://127.0.0.1:12990/debian sid/main amd64 dh-python all 5.20211022.1 [103 kB] Get:69 http://127.0.0.1:12990/debian sid/main amd64 libllvm11 amd64 1:11.1.0-4 [17.9 MB] Get:70 http://127.0.0.1:12990/debian sid/main amd64 libclang-cpp11 amd64 1:11.1.0-4 [9662 kB] Get:71 http://127.0.0.1:12990/debian sid/main amd64 libclang1-11 amd64 1:11.1.0-4 [5522 kB] Get:72 http://127.0.0.1:12990/debian sid/main amd64 libxapian30 amd64 1.4.18-3 [1089 kB] Get:73 http://127.0.0.1:12990/debian sid/main amd64 doxygen amd64 1.9.1-2 [4234 kB] Get:74 http://127.0.0.1:12990/debian sid/main amd64 libblas3 amd64 3.10.0-1 [156 kB] Get:75 http://127.0.0.1:12990/debian sid/main amd64 libexpat1-dev amd64 2.4.1-3 [156 kB] Get:76 http://127.0.0.1:12990/debian sid/main amd64 libgfortran5 amd64 11.2.0-10 [710 kB] Get:77 http://127.0.0.1:12990/debian sid/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-8 [315 kB] Get:78 http://127.0.0.1:12990/debian sid/main amd64 libjs-underscore all 1.9.1~dfsg-4 [100 kB] Get:79 http://127.0.0.1:12990/debian sid/main amd64 libjs-sphinxdoc all 4.2.0-5 [137 kB] Get:80 http://127.0.0.1:12990/debian sid/main amd64 liblapack3 amd64 3.10.0-1 [2213 kB] Get:81 http://127.0.0.1:12990/debian sid/main amd64 liblbfgsb0 amd64 3.0+dfsg.3-9 [28.5 kB] Get:82 http://127.0.0.1:12990/debian sid/main amd64 libpython3.9 amd64 3.9.7-4 [1693 kB] Get:83 http://127.0.0.1:12990/debian sid/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] Get:84 http://127.0.0.1:12990/debian sid/main amd64 libpython3.9-dev amd64 3.9.7-4 [4032 kB] Get:85 http://127.0.0.1:12990/debian sid/main amd64 libpython3-dev amd64 3.9.2-3 [21.7 kB] Get:86 http://127.0.0.1:12990/debian sid/main amd64 ocl-icd-libopencl1 amd64 2.2.14-3 [42.6 kB] Get:87 http://127.0.0.1:12990/debian sid/main amd64 python3-attr all 20.3.0-1 [52.9 kB] Get:88 http://127.0.0.1:12990/debian sid/main amd64 python3-decorator all 4.4.2-2 [15.8 kB] Get:89 http://127.0.0.1:12990/debian sid/main amd64 python3.9-dev amd64 3.9.7-4 [508 kB] Get:90 http://127.0.0.1:12990/debian sid/main amd64 python3-dev amd64 3.9.2-3 [24.8 kB] Get:91 http://127.0.0.1:12990/debian sid/main amd64 python3-six all 1.16.0-2 [17.5 kB] Get:92 http://127.0.0.1:12990/debian sid/main amd64 python3-more-itertools all 4.2.0-3 [42.7 kB] Get:93 http://127.0.0.1:12990/debian sid/main amd64 python3-zipp all 1.0.0-3 [6060 B] Get:94 http://127.0.0.1:12990/debian sid/main amd64 python3-importlib-metadata all 4.6.4-1 [22.5 kB] Get:95 http://127.0.0.1:12990/debian sid/main amd64 python3-iniconfig all 1.1.1-1 [6308 B] Get:96 http://127.0.0.1:12990/debian sid/main amd64 python3-pkg-resources all 58.2.0-1 [192 kB] Get:97 http://127.0.0.1:12990/debian sid/main amd64 python3-numpy amd64 1:1.19.5-1 [2693 kB] Get:98 http://127.0.0.1:12990/debian sid/main amd64 python3-pyparsing all 2.4.7-1 [109 kB] Get:99 http://127.0.0.1:12990/debian sid/main amd64 python3-packaging all 21.0-1 [33.5 kB] Get:100 http://127.0.0.1:12990/debian sid/main amd64 python3-pluggy all 0.13.0-7 [22.4 kB] Get:101 http://127.0.0.1:12990/debian sid/main amd64 python3-py all 1.10.0-1 [94.2 kB] Get:102 http://127.0.0.1:12990/debian sid/main amd64 python3-toml all 0.10.2-1 [16.2 kB] Get:103 http://127.0.0.1:12990/debian sid/main amd64 python3-pytest all 6.2.5-1 [218 kB] Get:104 http://127.0.0.1:12990/debian sid/main amd64 python3-scipy amd64 1.7.1-1 [13.2 MB] Get:105 http://127.0.0.1:12990/debian sid/main amd64 swig4.0 amd64 4.0.2-1 [1377 kB] Get:106 http://127.0.0.1:12990/debian sid/main amd64 swig all 4.0.2-1 [330 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 96.8 MB in 1s (149 MB/s) Selecting previously unselected package bsdextrautils. 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Setting up emacsen-common (3.0.4) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up dh-elpa-helper (2.0.9) ... Setting up libncurses6:amd64 (6.2+20210905-1) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up libclang1-11 (1:11.1.0-4) ... Setting up autopoint (0.21-4) ... Setting up libncursesw6:amd64 (6.2+20210905-1) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2.1) ... Setting up libgfortran5:amd64 (11.2.0-10) ... Setting up libjsoncpp24:amd64 (1.9.4-5) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2) ... Setting up sensible-utils (0.0.17) ... Setting up ocl-icd-libopencl1:amd64 (2.2.14-3) ... Setting up librhash0:amd64 (1.4.2-1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libmpdec3:amd64 (2.5.1-2) ... Setting up libsub-override-perl (0.09-2) ... Setting up libssh2-1:amd64 (1.10.0-2) ... Setting up cmake-data (3.21.3-5) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-8) ... Setting up swig4.0 (4.0.2-1) ... Setting up libelf1:amd64 (0.185-2) ... Setting up readline-common (8.1-2) ... Setting up libprocps8:amd64 (2:3.3.17-5) ... Setting up libjs-underscore (1.9.1~dfsg-4) ... Setting up libfile-stripnondeterminism-perl (1.12.0-2) ... Setting up liblapack3:amd64 (3.10.0-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.21-4) ... Setting up swig (4.0.2-1) ... Setting up libtool (2.4.6-15) ... Setting up libreadline8:amd64 (8.1-2) ... Setting up libldap-2.4-2:amd64 (2.4.59+dfsg-1) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libclang-cpp11 (1:11.1.0-4) ... Setting up doxygen (1.9.1-2) ... Setting up libjs-sphinxdoc (4.2.0-5) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.12.0-2) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-7) ... Setting up procps (2:3.3.17-5) ... Setting up libcurl4:amd64 (7.74.0-1.3+b1) ... Setting up libpython3.9-stdlib:amd64 (3.9.7-4) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.3-9) ... Setting up automake (1:1.16.5-1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up libpython3.9:amd64 (3.9.7-4) ... Setting up cmake (3.21.3-5) ... Setting up python3.9 (3.9.7-4) ... Setting up libpython3.9-dev:amd64 (3.9.7-4) ... Setting up debhelper (13.5.2) ... Setting up python3 (3.9.2-3) ... Setting up python3-six (1.16.0-2) ... Setting up python3-decorator (4.4.2-2) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up cython3 (0.29.24-1) ... Setting up python3-toml (0.10.2-1) ... Setting up python3.9-dev (3.9.7-4) ... Setting up python3-lib2to3 (3.9.7-1) ... Setting up python3-pkg-resources (58.2.0-1) ... Setting up python3-distutils (3.9.7-1) ... Setting up dh-python (5.20211022.1) ... Setting up python3-more-itertools (4.2.0-3) ... Setting up python3-iniconfig (1.1.1-1) ... Setting up python3-attr (20.3.0-1) ... Setting up libpython3-dev:amd64 (3.9.2-3) ... Setting up python3-py (1.10.0-1) ... Setting up python3-zipp (1.0.0-3) ... Setting up python3-packaging (21.0-1) ... Setting up python3-dev (3.9.2-3) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up python3-scipy (1.7.1-1) ... Setting up python3-importlib-metadata (4.6.4-1) ... Setting up python3-pluggy (0.13.0-7) ... Setting up python3-pytest (6.2.5-1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.32-4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-6-cloud-amd64 #1 SMP Debian 4.19.67-2+deb10u2 (2019-11-11) amd64 (x86_64) Toolchain package versions: binutils_2.37-7 dpkg-dev_1.20.9 g++-11_11.2.0-10 gcc-11_11.2.0-10 libc6-dev_2.32-4 libstdc++-11-dev_11.2.0-10 libstdc++6_11.2.0-10 linux-libc-dev_5.14.12-1 Package versions: adduser_3.118 apt_2.3.11 autoconf_2.71-2 automake_1:1.16.5-1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12 base-passwd_3.5.52 bash_5.1-3+b2 binutils_2.37-7 binutils-common_2.37-7 binutils-x86-64-linux-gnu_2.37-7 bsdextrautils_2.37.2-4 bsdutils_1:2.37.2-4 build-essential_12.9 bzip2_1.0.8-4 clang-13_1:13.0.0-8 cmake_3.21.3-5 cmake-data_3.21.3-5 coreutils_8.32-4+b1 cpp_4:11.2.0-2 cpp-11_11.2.0-10 cython3_0.29.24-1 dash_0.5.11+git20210120+802ebd4-2 debconf_1.5.78 debhelper_13.5.2 debian-archive-keyring_2021.1.1 debianutils_5.5-1 dh-autoreconf_20 dh-elpa-helper_2.0.9 dh-python_5.20211022.1 dh-strip-nondeterminism_1.12.0-2 diffutils_1:3.7-5 doxygen_1.9.1-2 dpkg_1.20.9 dpkg-dev_1.20.9 dwz_0.14-1 e2fsprogs_1.46.4-1 emacsen-common_3.0.4 fakeroot_1.26-1 file_1:5.39-3 findutils_4.8.0-1 g++_4:11.2.0-2 g++-11_11.2.0-10 gcc_4:11.2.0-2 gcc-10-base_10.3.0-11 gcc-11_11.2.0-10 gcc-11-base_11.2.0-10 gcc-9-base_9.4.0-3 gettext_0.21-4 gettext-base_0.21-4 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 lib32gcc-s1_11.2.0-10 lib32stdc++6_11.2.0-10 libacl1_2.3.1-1 libapt-pkg6.0_2.3.11 libarchive-zip-perl_1.68-1 libarchive13_3.4.3-2+b1 libasan5_9.4.0-3 libasan6_11.2.0-10 libatomic1_11.2.0-10 libattr1_1:2.5.1-1 libaudit-common_1:3.0.6-1 libaudit1_1:3.0.6-1 libbinutils_2.37-7 libblas3_3.10.0-1 libblkid1_2.37.2-4 libbrotli1_1.0.9-2+b2 libbsd0_0.11.3-1 libbz2-1.0_1.0.8-4 libc-bin_2.32-4 libc-dev-bin_2.32-4 libc6_2.32-4 libc6-dev_2.32-4 libc6-i386_2.32-4 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-10 libclang-common-13-dev_1:13.0.0-8 libclang-cpp11_1:11.1.0-4 libclang-cpp13_1:13.0.0-8 libclang1-11_1:11.1.0-4 libclang1-13_1:13.0.0-8 libcom-err2_1.46.4-1 libcrypt-dev_1:4.4.25-2 libcrypt1_1:4.4.25-2 libctf-nobfd0_2.37-7 libctf0_2.37-7 libcurl4_7.74.0-1.3+b1 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.5.2 libdpkg-perl_1.20.9 libedit2_3.1-20210910-1 libelf1_0.185-2 libexpat1_2.4.1-3 libexpat1-dev_2.4.1-3 libext2fs2_1.46.4-1 libfakeroot_1.26-1 libffi8_3.4.2-3 libfile-stripnondeterminism-perl_1.12.0-2 libgc1_1:8.0.4-3 libgcc-11-dev_11.2.0-10 libgcc-9-dev_9.4.0-3 libgcc-s1_11.2.0-10 libgcrypt20_1.9.4-3+b1 libgdbm-compat4_1.22-1 libgdbm6_1.22-1 libgfortran5_11.2.0-10 libgmp10_2:6.2.1+dfsg-2 libgnutls30_3.7.2-2 libgomp1_11.2.0-10 libgpg-error0_1.42-3 libgssapi-krb5-2_1.18.3-7 libhogweed6_3.7.3-1 libicu67_67.1-7 libidn2-0_2.3.2-2 libisl23_0.24-2 libitm1_11.2.0-10 libjs-jquery_3.5.1+dfsg+~3.5.5-8 libjs-sphinxdoc_4.2.0-5 libjs-underscore_1.9.1~dfsg-4 libjsoncpp24_1.9.4-5 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 liblapack3_3.10.0-1 liblbfgsb0_3.0+dfsg.3-9 libldap-2.4-2_2.4.59+dfsg-1 libllvm11_1:11.1.0-4 libllvm13_1:13.0.0-8 liblsan0_11.2.0-10 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmd0_1.0.4-1 libmount1_2.37.2-4 libmpc3_1.2.1-1 libmpdec3_2.5.1-2 libmpfr6_4.1.0-3 libncurses6_6.2+20210905-1 libncursesw6_6.2+20210905-1 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libobjc-11-dev_11.2.0-10 libobjc-9-dev_9.4.0-3 libobjc4_11.2.0-10 libomp-13-dev_1:13.0.0-8 libomp5-13_1:13.0.0-8 libp11-kit0_0.24.0-5 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-6 libpipeline1_1.5.3-1 libprocps8_2:3.3.17-5 libpsl5_0.21.0-1.2 libpython3-dev_3.9.2-3 libpython3-stdlib_3.9.2-3 libpython3.9_3.9.7-4 libpython3.9-dev_3.9.7-4 libpython3.9-minimal_3.9.7-4 libpython3.9-stdlib_3.9.7-4 libquadmath0_11.2.0-10 libreadline8_8.1-2 librhash0_1.4.2-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.2-2 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b2 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.37.2-4 libsqlite3-0_3.36.0-2 libss2_1.46.4-1 libssh2-1_1.10.0-2 libssl1.1_1.1.1l-1 libstdc++-11-dev_11.2.0-10 libstdc++6_11.2.0-10 libsub-override-perl_0.09-2 libsystemd0_249.5-1 libtasn1-6_4.17.0-2 libtinfo6_6.2+20210905-1 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libtsan0_11.2.0-10 libubsan1_11.2.0-10 libuchardet0_0.0.7-1 libudev1_249.5-1 libunistring2_0.9.10-6 libuuid1_2.37.2-4 libuv1_1.42.0-1 libxapian30_1.4.18-3 libxml2_2.9.12+dfsg-5 libxxhash0_0.8.0-2 libz3-4_4.8.12-1+b1 libzstd1_1.4.8+dfsg-3 linux-libc-dev_5.14.12-1 login_1:4.8.1-1 logsave_1.46.4-1 lsb-base_11.1.0 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 media-types_4.0.0 mount_2.37.2-4 ncurses-base_6.2+20210905-1 ncurses-bin_6.2+20210905-1 ocl-icd-libopencl1_2.2.14-3 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-6 perl-base_5.32.1-6 perl-modules-5.32_5.32.1-6 po-debconf_1.0.21+nmu1 procps_2:3.3.17-5 python3_3.9.2-3 python3-attr_20.3.0-1 python3-decorator_4.4.2-2 python3-dev_3.9.2-3 python3-distutils_3.9.7-1 python3-importlib-metadata_4.6.4-1 python3-iniconfig_1.1.1-1 python3-lib2to3_3.9.7-1 python3-minimal_3.9.2-3 python3-more-itertools_4.2.0-3 python3-numpy_1:1.19.5-1 python3-packaging_21.0-1 python3-pkg-resources_58.2.0-1 python3-pluggy_0.13.0-7 python3-py_1.10.0-1 python3-pyparsing_2.4.7-1 python3-pytest_6.2.5-1 python3-scipy_1.7.1-1 python3-six_1.16.0-2 python3-toml_0.10.2-1 python3-zipp_1.0.0-3 python3.9_3.9.7-4 python3.9-dev_3.9.7-4 python3.9-minimal_3.9.7-4 qt5-qmake_5.15.2+dfsg-12 qt5-qmake-bin_5.15.2+dfsg-12 qtchooser_66-2 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 swig_4.0.2-1 swig4.0_4.0.2-1 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021e-1 util-linux_2.37.2-4 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: openmm Binary: libopenmm-dev, libopenmm7.6, libopenmm-plugins Architecture: any Version: 7.6.0+dfsg-1 Maintainer: Debichem Team Uploaders: Robert McGibbon , Andreas Tille , Andrius Merkys , Homepage: https://simtk.org/home/openmm Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/debichem-team/openmm Vcs-Git: https://salsa.debian.org/debichem-team/openmm.git Build-Depends: cmake, cython3, debhelper-compat (= 13), dh-python, doxygen, ocl-icd-libopencl1, python3-dev:any, python3-numpy , python3-pytest , python3-scipy , swig Package-List: libopenmm-dev deb libdevel optional arch=any libopenmm-plugins deb libs optional arch=any libopenmm7.6 deb libs optional arch=any Checksums-Sha1: 9f388582e5270587a40260be95a61dc6f5f99e9f 10865708 openmm_7.6.0+dfsg.orig.tar.xz 8c1a015912dfadb04e081be2b4d6ac59eb016758 14364 openmm_7.6.0+dfsg-1.debian.tar.xz Checksums-Sha256: e58a5c2c7d9ef81b0dcbbdd3712d05e193c7c4711ecd10f07a0bc149a503b1be 10865708 openmm_7.6.0+dfsg.orig.tar.xz f92181922eabf9f3d64c5c19f3401a2ea894081b5ecbf8409a17d3f64fb24e5b 14364 openmm_7.6.0+dfsg-1.debian.tar.xz Files: d45fe8d38e398ac493eea8dbb629094f 10865708 openmm_7.6.0+dfsg.orig.tar.xz f05e69d99d4ea30bd03a51f11d61845a 14364 openmm_7.6.0+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAmEp4zMSHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKHf3IP/09Yx6HQ5M8sQhMuC4dE1Sq1JDSc60Sd w1NzPCG86qZIPGEy7o3SujrFhRCjp+RLmzF8llJpC92+mPX4+QJLXCJIm6mNUMhp pJDsmIbFkPYxOd1chjSkwFVmBYE6nQ2dp39XaExH3rW3FUP4iO338IMtPFb9PjRs ukULHCCGtGm6kmuQ015XVsYxE+S+qB8Hy4EC2fQPF1X1Pf5gC/dnbNMwnhdoLu7y kMkMwV3dM6Li8MVxc4mU/AYmIbnF39NOO0VIQQvaIOtB9pA6QbON6Sph6gND0+ht u8os2aWwpelcmOUgiFW0Z7rIkF0HCtwgIwEiWsYMZ+1PRMiNZTJbeyUGLKHu7w/g 1K7AnEMzivAZB9vApEIw8jqwP/8ZyMsViwXhveedY3CoTNwFTo5yWEa/AQyTd2eh P/CyjbXs4thjDzrvAdo2HKJLkjVVTUmaQEiW/KiNZK+oysNyFH/OVTno+kZlwKG0 MJk8Zl9QH9KsD4FrfphnkCSfyVhvWi3UbNNh1dt20hRzRPbzZpBtdBuZFtwyqtJ8 zsUjdmKLAgR5Ete0ySLPaTsMLeIgv0xGioa7I47kvMznGJum/3fNqnfr/pcEh+Gi Taf3ZtGGl02pSNVs8JJm/e3Jp4Lb7njtEpLg1GoWLup57yeEtku1bAbvqtFM5aia 32+CNYG9AMoq =/Xly -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.0NDURxjx/trustedkeys.kbx': General error gpgv: Signature made Sat Aug 28 07:18:11 2021 UTC gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./openmm_7.6.0+dfsg-1.dsc dpkg-source: info: extracting openmm in /<> dpkg-source: info: unpacking openmm_7.6.0+dfsg.orig.tar.xz dpkg-source: info: unpacking openmm_7.6.0+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying skip-tests.patch dpkg-source: info: applying default_plugin_dir.diff dpkg-source: info: applying ignore-stochastic-test-failures.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=sid-amd64-sbuild-f3238790-03a6-4c71-9162-b4b596fae0cc SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -b -rfakeroot dpkg-buildpackage: info: source package openmm dpkg-buildpackage: info: source version 7.6.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=cmake # --with python3 dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake # --with python3 dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_C_FLAGS_RELEASE="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" -DCMAKE_CXX_FLAGS_RELEASE="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" -DCMAKE_SHARED_LINKER_FLAGS_RELEASE="-Wl,-z,relro -Wl,--as-needed" -DCMAKE_BUILD_TYPE=Release -DOPENMM_BUILD_AMOEBA_PLUGIN=ON -DOPENMM_BUILD_RPMD_PLUGIN=ON -DOPENMM_BUILD_DRUDE_PLUGIN=ON -DOPENMM_BUILD_SERIALIZATION_SUPPORT=ON -DOPENMM_BUILD_C_AND_FORTRAN_WRAPPERS=OFF cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_VERBOSE_MAKEFILE=ON "-DCMAKE_C_FLAGS_RELEASE=-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "-DCMAKE_CXX_FLAGS_RELEASE=-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "-DCMAKE_SHARED_LINKER_FLAGS_RELEASE=-Wl,-z,relro -Wl,--as-needed" -DCMAKE_BUILD_TYPE=Release -DOPENMM_BUILD_AMOEBA_PLUGIN=ON -DOPENMM_BUILD_RPMD_PLUGIN=ON -DOPENMM_BUILD_DRUDE_PLUGIN=ON -DOPENMM_BUILD_SERIALIZATION_SUPPORT=ON -DOPENMM_BUILD_C_AND_FORTRAN_WRAPPERS=OFF .. -- Found PythonInterp: /usr/bin/python3.9 (found version "3.9.7") -- The C compiler identification is Clang 13.0.0 -- The CXX compiler identification is Clang 13.0.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:25 (CMAKE_POLICY): The OLD behavior for policy CMP0042 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. CMake Warning (dev) at /usr/share/cmake-3.21/Modules/FindPackageHandleStandardArgs.cmake:438 (message): The package name passed to `find_package_handle_standard_args` (OPENCL) does not match the name of the calling package (OpenCL). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake_modules/FindOpenCL.cmake:86 (find_package_handle_standard_args) CMakeLists.txt:343 (FIND_PACKAGE) This warning is for project developers. Use -Wno-dev to suppress it. -- Could NOT find OPENCL (missing: OPENCL_LIBRARY OPENCL_INCLUDE_DIR) -- Found Doxygen: /usr/bin/doxygen (found version "1.9.1") found components: doxygen missing components: dot -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR OPENMM_BUILD_SERIALIZATION_SUPPORT -- Build files have been written to: /<>/obj-x86_64-linux-gnu make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles /<>/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/OpenMM.dir/build.make CMakeFiles/OpenMM.dir/depend make -f wrappers/python/CMakeFiles/BuildModule.dir/build.make wrappers/python/CMakeFiles/BuildModule.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/wrappers/python /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/wrappers/python /<>/obj-x86_64-linux-gnu/wrappers/python/CMakeFiles/BuildModule.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/OpenMM.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f wrappers/python/CMakeFiles/BuildModule.dir/build.make wrappers/python/CMakeFiles/BuildModule.dir/build make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/OpenMM.dir/build.make CMakeFiles/OpenMM.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 0%] CMake-copying file /<>/wrappers/python/openmm/__init__.py to /<>/obj-x86_64-linux-gnu/python/openmm/__init__.py [ 0%] CMake-copying file /<>/wrappers/python/MANIFEST.in to /<>/obj-x86_64-linux-gnu/python/MANIFEST.in [ 0%] CMake-copying file /<>/wrappers/python/openmm/amd.py to /<>/obj-x86_64-linux-gnu/python/openmm/amd.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/MANIFEST.in /<>/obj-x86_64-linux-gnu/python/MANIFEST.in cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/__init__.py /<>/obj-x86_64-linux-gnu/python/openmm/__init__.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/amd.py /<>/obj-x86_64-linux-gnu/python/openmm/amd.py [ 0%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/AndersenThermostat.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 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CMakeFiles/OpenMM.dir/openmmapi/src/AssertionUtilities.cpp.o -c /<>/openmmapi/src/AssertionUtilities.cpp cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/__init__.py /<>/obj-x86_64-linux-gnu/python/openmm/app/__init__.py /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/AndersenThermostatImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/AndersenThermostatImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/AndersenThermostatImpl.cpp.o -c /<>/openmmapi/src/AndersenThermostatImpl.cpp [ 0%] CMake-copying file /<>/wrappers/python/openmm/app/amberinpcrdfile.py to /<>/obj-x86_64-linux-gnu/python/openmm/app/amberinpcrdfile.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/amberinpcrdfile.py /<>/obj-x86_64-linux-gnu/python/openmm/app/amberinpcrdfile.py [ 0%] CMake-copying file /<>/wrappers/python/openmm/app/amberprmtopfile.py to 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/<>/wrappers/python/openmm/app/charmmpsffile.py to /<>/obj-x86_64-linux-gnu/python/openmm/app/charmmpsffile.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/charmmpsffile.py /<>/obj-x86_64-linux-gnu/python/openmm/app/charmmpsffile.py [ 0%] CMake-copying file /<>/wrappers/python/openmm/app/checkpointreporter.py to /<>/obj-x86_64-linux-gnu/python/openmm/app/checkpointreporter.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/checkpointreporter.py /<>/obj-x86_64-linux-gnu/python/openmm/app/checkpointreporter.py [ 0%] CMake-copying file /<>/wrappers/python/openmm/app/data/DLPC.pdb to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/DLPC.pdb cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/DLPC.pdb /<>/obj-x86_64-linux-gnu/python/openmm/app/data/DLPC.pdb [ 0%] CMake-copying file 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/BrownianIntegrator.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/BrownianIntegrator.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/BrownianIntegrator.cpp.o -c /<>/openmmapi/src/BrownianIntegrator.cpp [ 2%] CMake-copying file /<>/wrappers/python/openmm/app/data/amber10_obc.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amber10_obc.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/amber10_obc.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amber10_obc.xml [ 2%] CMake-copying file /<>/wrappers/python/openmm/app/data/amber14-all.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amber14-all.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/amber14-all.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amber14-all.xml [ 2%] CMake-copying file /<>/wrappers/python/openmm/app/data/amber14/DNA.OL15.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/DNA.OL15.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/amber14/DNA.OL15.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/DNA.OL15.xml [ 2%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CMAPTorsionForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CMAPTorsionForce.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CMAPTorsionForce.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CMAPTorsionForce.cpp.o -c /<>/openmmapi/src/CMAPTorsionForce.cpp [ 2%] CMake-copying file /<>/wrappers/python/openmm/app/data/amber14/DNA.bsc1.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/DNA.bsc1.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/amber14/DNA.bsc1.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/DNA.bsc1.xml [ 2%] CMake-copying file /<>/wrappers/python/openmm/app/data/amber14/RNA.OL3.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/RNA.OL3.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/amber14/RNA.OL3.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/RNA.OL3.xml [ 2%] CMake-copying file /<>/wrappers/python/openmm/app/data/amber14/lipid17.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/lipid17.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/amber14/lipid17.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/lipid17.xml [ 2%] CMake-copying file /<>/wrappers/python/openmm/app/data/amber14/protein.ff14SB.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/protein.ff14SB.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/amber14/protein.ff14SB.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/protein.ff14SB.xml [ 2%] CMake-copying file /<>/wrappers/python/openmm/app/data/amber14/protein.ff15ipq.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/protein.ff15ipq.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/amber14/protein.ff15ipq.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/protein.ff15ipq.xml [ 2%] CMake-copying file /<>/wrappers/python/openmm/app/data/amber14/spce.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/spce.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/amber14/spce.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/spce.xml [ 2%] CMake-copying file /<>/wrappers/python/openmm/app/data/amber14/tip3p.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/tip3p.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/amber14/tip3p.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/tip3p.xml [ 2%] CMake-copying file /<>/wrappers/python/openmm/app/data/amber14/tip3pfb.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/tip3pfb.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/amber14/tip3pfb.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/tip3pfb.xml [ 4%] CMake-copying file /<>/wrappers/python/openmm/app/data/amber14/tip4pew.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/tip4pew.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/amber14/tip4pew.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/tip4pew.xml [ 4%] CMake-copying file /<>/wrappers/python/openmm/app/data/amber14/tip4pfb.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/tip4pfb.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/amber14/tip4pfb.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amber14/tip4pfb.xml [ 4%] CMake-copying file /<>/wrappers/python/openmm/app/data/amber96.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amber96.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/amber96.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amber96.xml [ 4%] CMake-copying file /<>/wrappers/python/openmm/app/data/amber96_obc.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amber96_obc.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/amber96_obc.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amber96_obc.xml [ 4%] CMake-copying file /<>/wrappers/python/openmm/app/data/amber99Test.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amber99Test.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/amber99Test.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amber99Test.xml [ 4%] CMake-copying file /<>/wrappers/python/openmm/app/data/amber99_obc.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amber99_obc.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/amber99_obc.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amber99_obc.xml [ 4%] CMake-copying file /<>/wrappers/python/openmm/app/data/amber99sb.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amber99sb.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/amber99sb.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amber99sb.xml [ 4%] CMake-copying file /<>/wrappers/python/openmm/app/data/amber99sbildn.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amber99sbildn.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/amber99sbildn.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amber99sbildn.xml [ 4%] CMake-copying file /<>/wrappers/python/openmm/app/data/amber99sbnmr.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amber99sbnmr.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/amber99sbnmr.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amber99sbnmr.xml [ 4%] CMake-copying file /<>/wrappers/python/openmm/app/data/amberfb15.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amberfb15.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/amberfb15.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amberfb15.xml [ 4%] CMake-copying file /<>/wrappers/python/openmm/app/data/amoeba2009.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amoeba2009.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/amoeba2009.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amoeba2009.xml [ 4%] CMake-copying file /<>/wrappers/python/openmm/app/data/amoeba2009_gk.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amoeba2009_gk.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/amoeba2009_gk.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amoeba2009_gk.xml [ 4%] CMake-copying file /<>/wrappers/python/openmm/app/data/amoeba2013.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amoeba2013.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/amoeba2013.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amoeba2013.xml [ 4%] CMake-copying file /<>/wrappers/python/openmm/app/data/amoeba2013_gk.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amoeba2013_gk.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/amoeba2013_gk.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/amoeba2013_gk.xml [ 4%] CMake-copying file /<>/wrappers/python/openmm/app/data/charmm36.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/charmm36.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/charmm36.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/charmm36.xml [ 4%] CMake-copying file /<>/wrappers/python/openmm/app/data/charmm36/spce.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/charmm36/spce.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/charmm36/spce.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/charmm36/spce.xml [ 4%] CMake-copying file /<>/wrappers/python/openmm/app/data/charmm36/tip3p-pme-b.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/charmm36/tip3p-pme-b.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/charmm36/tip3p-pme-b.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/charmm36/tip3p-pme-b.xml [ 6%] CMake-copying file /<>/wrappers/python/openmm/app/data/charmm36/tip3p-pme-f.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/charmm36/tip3p-pme-f.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/charmm36/tip3p-pme-f.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/charmm36/tip3p-pme-f.xml [ 6%] CMake-copying file /<>/wrappers/python/openmm/app/data/charmm36/tip4p2005.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/charmm36/tip4p2005.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/charmm36/tip4p2005.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/charmm36/tip4p2005.xml [ 6%] CMake-copying file /<>/wrappers/python/openmm/app/data/charmm36/tip4pew.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/charmm36/tip4pew.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/charmm36/tip4pew.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/charmm36/tip4pew.xml [ 6%] CMake-copying file /<>/wrappers/python/openmm/app/data/charmm36/tip5p.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/charmm36/tip5p.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/charmm36/tip5p.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/charmm36/tip5p.xml [ 6%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CMAPTorsionForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CMAPTorsionForceImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CMAPTorsionForceImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CMAPTorsionForceImpl.cpp.o -c /<>/openmmapi/src/CMAPTorsionForceImpl.cpp [ 6%] CMake-copying file /<>/wrappers/python/openmm/app/data/charmm36/tip5pew.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/charmm36/tip5pew.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/charmm36/tip5pew.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/charmm36/tip5pew.xml [ 6%] CMake-copying file /<>/wrappers/python/openmm/app/data/charmm36/water.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/charmm36/water.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/charmm36/water.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/charmm36/water.xml [ 6%] CMake-copying file /<>/wrappers/python/openmm/app/data/charmm_polar_2013.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/charmm_polar_2013.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/charmm_polar_2013.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/charmm_polar_2013.xml [ 6%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CMMotionRemover.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CMMotionRemover.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CMMotionRemover.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CMMotionRemover.cpp.o -c /<>/openmmapi/src/CMMotionRemover.cpp [ 6%] CMake-copying file /<>/wrappers/python/openmm/app/data/charmm_polar_2019.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/charmm_polar_2019.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/charmm_polar_2019.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/charmm_polar_2019.xml [ 6%] CMake-copying file /<>/wrappers/python/openmm/app/data/hydrogens.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/hydrogens.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/hydrogens.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/hydrogens.xml [ 6%] CMake-copying file /<>/wrappers/python/openmm/app/data/iamoeba.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/iamoeba.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/iamoeba.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/iamoeba.xml [ 6%] CMake-copying file /<>/wrappers/python/openmm/app/data/pdbNames.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/pdbNames.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/pdbNames.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/pdbNames.xml [ 6%] CMake-copying file /<>/wrappers/python/openmm/app/data/residues.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/residues.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/residues.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/residues.xml [ 6%] CMake-copying file /<>/wrappers/python/openmm/app/data/spce.pdb to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/spce.pdb cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/spce.pdb /<>/obj-x86_64-linux-gnu/python/openmm/app/data/spce.pdb [ 6%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CMMotionRemoverImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CMMotionRemoverImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CMMotionRemoverImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CMMotionRemoverImpl.cpp.o -c /<>/openmmapi/src/CMMotionRemoverImpl.cpp [ 6%] CMake-copying file /<>/wrappers/python/openmm/app/data/spce.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/spce.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/spce.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/spce.xml [ 6%] CMake-copying file /<>/wrappers/python/openmm/app/data/swm4ndp.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/swm4ndp.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/swm4ndp.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/swm4ndp.xml [ 6%] CMake-copying file /<>/wrappers/python/openmm/app/data/test.pdb to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/test.pdb cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/test.pdb /<>/obj-x86_64-linux-gnu/python/openmm/app/data/test.pdb [ 6%] CMake-copying file /<>/wrappers/python/openmm/app/data/tip3p.pdb to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/tip3p.pdb cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/tip3p.pdb /<>/obj-x86_64-linux-gnu/python/openmm/app/data/tip3p.pdb [ 8%] CMake-copying file /<>/wrappers/python/openmm/app/data/tip3p.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/tip3p.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/tip3p.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/tip3p.xml [ 8%] CMake-copying file /<>/wrappers/python/openmm/app/data/tip3pfb.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/tip3pfb.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/tip3pfb.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/tip3pfb.xml [ 8%] CMake-copying file /<>/wrappers/python/openmm/app/data/tip4pew.pdb to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/tip4pew.pdb cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/tip4pew.pdb /<>/obj-x86_64-linux-gnu/python/openmm/app/data/tip4pew.pdb [ 8%] CMake-copying file /<>/wrappers/python/openmm/app/data/tip4pew.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/tip4pew.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/tip4pew.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/tip4pew.xml [ 8%] CMake-copying file /<>/wrappers/python/openmm/app/data/tip4pfb.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/tip4pfb.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/tip4pfb.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/tip4pfb.xml [ 8%] CMake-copying file /<>/wrappers/python/openmm/app/data/tip5p.pdb to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/tip5p.pdb cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/tip5p.pdb /<>/obj-x86_64-linux-gnu/python/openmm/app/data/tip5p.pdb [ 8%] CMake-copying file /<>/wrappers/python/openmm/app/data/tip5p.xml to /<>/obj-x86_64-linux-gnu/python/openmm/app/data/tip5p.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/data/tip5p.xml /<>/obj-x86_64-linux-gnu/python/openmm/app/data/tip5p.xml [ 8%] CMake-copying file /<>/wrappers/python/openmm/app/dcdfile.py to /<>/obj-x86_64-linux-gnu/python/openmm/app/dcdfile.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/dcdfile.py /<>/obj-x86_64-linux-gnu/python/openmm/app/dcdfile.py [ 8%] CMake-copying file /<>/wrappers/python/openmm/app/dcdreporter.py to /<>/obj-x86_64-linux-gnu/python/openmm/app/dcdreporter.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/dcdreporter.py /<>/obj-x86_64-linux-gnu/python/openmm/app/dcdreporter.py [ 8%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CompiledExpressionSet.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CompiledExpressionSet.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CompiledExpressionSet.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CompiledExpressionSet.cpp.o -c /<>/openmmapi/src/CompiledExpressionSet.cpp [ 8%] CMake-copying file /<>/wrappers/python/openmm/app/desmonddmsfile.py to /<>/obj-x86_64-linux-gnu/python/openmm/app/desmonddmsfile.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/desmonddmsfile.py /<>/obj-x86_64-linux-gnu/python/openmm/app/desmonddmsfile.py [ 8%] CMake-copying file /<>/wrappers/python/openmm/app/element.py to /<>/obj-x86_64-linux-gnu/python/openmm/app/element.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/element.py /<>/obj-x86_64-linux-gnu/python/openmm/app/element.py [ 8%] CMake-copying file /<>/wrappers/python/openmm/app/forcefield.py to /<>/obj-x86_64-linux-gnu/python/openmm/app/forcefield.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/forcefield.py /<>/obj-x86_64-linux-gnu/python/openmm/app/forcefield.py [ 8%] CMake-copying file /<>/wrappers/python/openmm/app/gromacsgrofile.py to /<>/obj-x86_64-linux-gnu/python/openmm/app/gromacsgrofile.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/gromacsgrofile.py /<>/obj-x86_64-linux-gnu/python/openmm/app/gromacsgrofile.py [ 8%] CMake-copying file /<>/wrappers/python/openmm/app/gromacstopfile.py to /<>/obj-x86_64-linux-gnu/python/openmm/app/gromacstopfile.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/gromacstopfile.py /<>/obj-x86_64-linux-gnu/python/openmm/app/gromacstopfile.py [ 8%] CMake-copying file /<>/wrappers/python/openmm/app/internal/__init__.py to /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/__init__.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/internal/__init__.py /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/__init__.py [ 8%] CMake-copying file /<>/wrappers/python/openmm/app/internal/amber_file_parser.py to /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/amber_file_parser.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/internal/amber_file_parser.py /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/amber_file_parser.py [ 8%] CMake-copying file /<>/wrappers/python/openmm/app/internal/charmm/__init__.py to /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/charmm/__init__.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/internal/charmm/__init__.py /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/charmm/__init__.py [ 10%] CMake-copying file /<>/wrappers/python/openmm/app/internal/charmm/_charmmfile.py to /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/charmm/_charmmfile.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/internal/charmm/_charmmfile.py /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/charmm/_charmmfile.py [ 10%] CMake-copying file /<>/wrappers/python/openmm/app/internal/charmm/exceptions.py to /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/charmm/exceptions.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/internal/charmm/exceptions.py /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/charmm/exceptions.py [ 10%] CMake-copying file /<>/wrappers/python/openmm/app/internal/charmm/topologyobjects.py to /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/charmm/topologyobjects.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/internal/charmm/topologyobjects.py /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/charmm/topologyobjects.py [ 10%] CMake-copying file /<>/wrappers/python/openmm/app/internal/compiled.pyx to /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/compiled.pyx cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/internal/compiled.pyx /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/compiled.pyx [ 10%] CMake-copying file /<>/wrappers/python/openmm/app/internal/customgbforces.py to /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/customgbforces.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/internal/customgbforces.py /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/customgbforces.py [ 10%] CMake-copying file /<>/wrappers/python/openmm/app/internal/pdbstructure.py to /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbstructure.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/internal/pdbstructure.py /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbstructure.py [ 10%] CMake-copying file /<>/wrappers/python/openmm/app/internal/pdbx/__init__.py to /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbx/__init__.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/internal/pdbx/__init__.py /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbx/__init__.py [ 10%] CMake-copying file /<>/wrappers/python/openmm/app/internal/pdbx/reader/PdbxContainers.py to /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbx/reader/PdbxContainers.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/internal/pdbx/reader/PdbxContainers.py /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbx/reader/PdbxContainers.py [ 10%] CMake-copying file /<>/wrappers/python/openmm/app/internal/pdbx/reader/PdbxParser.py to /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbx/reader/PdbxParser.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/internal/pdbx/reader/PdbxParser.py /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbx/reader/PdbxParser.py [ 10%] CMake-copying file /<>/wrappers/python/openmm/app/internal/pdbx/reader/PdbxReadWriteTests.py to /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbx/reader/PdbxReadWriteTests.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/internal/pdbx/reader/PdbxReadWriteTests.py /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbx/reader/PdbxReadWriteTests.py [ 10%] CMake-copying file /<>/wrappers/python/openmm/app/internal/pdbx/reader/PdbxReader.py to /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbx/reader/PdbxReader.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/internal/pdbx/reader/PdbxReader.py /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbx/reader/PdbxReader.py [ 10%] CMake-copying file /<>/wrappers/python/openmm/app/internal/pdbx/reader/PdbxReaderTests.py to /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbx/reader/PdbxReaderTests.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/internal/pdbx/reader/PdbxReaderTests.py /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbx/reader/PdbxReaderTests.py [ 10%] CMake-copying file /<>/wrappers/python/openmm/app/internal/pdbx/reader/__init__.py to /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbx/reader/__init__.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/internal/pdbx/reader/__init__.py /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbx/reader/__init__.py [ 12%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CompoundIntegrator.cpp.o [ 12%] CMake-copying file /<>/wrappers/python/openmm/app/internal/pdbx/writer/PdbxWriter.py to /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbx/writer/PdbxWriter.py /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CompoundIntegrator.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CompoundIntegrator.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CompoundIntegrator.cpp.o -c /<>/openmmapi/src/CompoundIntegrator.cpp cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/internal/pdbx/writer/PdbxWriter.py /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbx/writer/PdbxWriter.py [ 12%] CMake-copying file /<>/wrappers/python/openmm/app/internal/pdbx/writer/PdbxWriterTests.py to /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbx/writer/PdbxWriterTests.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/internal/pdbx/writer/PdbxWriterTests.py /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbx/writer/PdbxWriterTests.py [ 12%] CMake-copying file /<>/wrappers/python/openmm/app/internal/pdbx/writer/__init__.py to /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbx/writer/__init__.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/internal/pdbx/writer/__init__.py /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/pdbx/writer/__init__.py [ 12%] CMake-copying file /<>/wrappers/python/openmm/app/internal/singleton.py to /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/singleton.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/internal/singleton.py /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/singleton.py [ 14%] CMake-copying file /<>/wrappers/python/openmm/app/internal/unitcell.py to /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/unitcell.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/internal/unitcell.py /<>/obj-x86_64-linux-gnu/python/openmm/app/internal/unitcell.py [ 14%] CMake-copying file /<>/wrappers/python/openmm/app/metadynamics.py to /<>/obj-x86_64-linux-gnu/python/openmm/app/metadynamics.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/metadynamics.py /<>/obj-x86_64-linux-gnu/python/openmm/app/metadynamics.py [ 14%] CMake-copying file /<>/wrappers/python/openmm/app/modeller.py to /<>/obj-x86_64-linux-gnu/python/openmm/app/modeller.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/modeller.py /<>/obj-x86_64-linux-gnu/python/openmm/app/modeller.py [ 14%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/Context.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/Context.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/Context.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/Context.cpp.o -c /<>/openmmapi/src/Context.cpp [ 14%] CMake-copying file /<>/wrappers/python/openmm/app/pdbfile.py to /<>/obj-x86_64-linux-gnu/python/openmm/app/pdbfile.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/pdbfile.py /<>/obj-x86_64-linux-gnu/python/openmm/app/pdbfile.py [ 14%] CMake-copying file /<>/wrappers/python/openmm/app/pdbreporter.py to /<>/obj-x86_64-linux-gnu/python/openmm/app/pdbreporter.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/pdbreporter.py /<>/obj-x86_64-linux-gnu/python/openmm/app/pdbreporter.py [ 14%] CMake-copying file /<>/wrappers/python/openmm/app/pdbxfile.py to /<>/obj-x86_64-linux-gnu/python/openmm/app/pdbxfile.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/pdbxfile.py /<>/obj-x86_64-linux-gnu/python/openmm/app/pdbxfile.py [ 14%] CMake-copying file /<>/wrappers/python/openmm/app/simulatedtempering.py to /<>/obj-x86_64-linux-gnu/python/openmm/app/simulatedtempering.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/simulatedtempering.py /<>/obj-x86_64-linux-gnu/python/openmm/app/simulatedtempering.py [ 14%] CMake-copying file /<>/wrappers/python/openmm/app/simulation.py to /<>/obj-x86_64-linux-gnu/python/openmm/app/simulation.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/simulation.py /<>/obj-x86_64-linux-gnu/python/openmm/app/simulation.py [ 14%] CMake-copying file /<>/wrappers/python/openmm/app/statedatareporter.py to /<>/obj-x86_64-linux-gnu/python/openmm/app/statedatareporter.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/statedatareporter.py /<>/obj-x86_64-linux-gnu/python/openmm/app/statedatareporter.py [ 14%] CMake-copying file /<>/wrappers/python/openmm/app/topology.py to /<>/obj-x86_64-linux-gnu/python/openmm/app/topology.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/app/topology.py /<>/obj-x86_64-linux-gnu/python/openmm/app/topology.py [ 14%] CMake-copying file /<>/wrappers/python/openmm/mtsintegrator.py to /<>/obj-x86_64-linux-gnu/python/openmm/mtsintegrator.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/mtsintegrator.py /<>/obj-x86_64-linux-gnu/python/openmm/mtsintegrator.py [ 14%] CMake-copying file /<>/wrappers/python/src/swig_doxygen/swig_lib/python/typemaps.i to /<>/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/typemaps.i cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/src/swig_doxygen/swig_lib/python/typemaps.i /<>/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/typemaps.i [ 14%] CMake-copying file /<>/wrappers/python/src/swig_doxygen/OpenMM.i to /<>/obj-x86_64-linux-gnu/python/src/swig_doxygen/OpenMM.i cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/src/swig_doxygen/OpenMM.i /<>/obj-x86_64-linux-gnu/python/src/swig_doxygen/OpenMM.i [ 14%] Parsing OpenMM header files with doxygen... cd /<>/obj-x86_64-linux-gnu/wrappers/python/src/swig_doxygen/doxygen && /usr/bin/doxygen warning: Tag 'SYMBOL_CACHE_SIZE' at line 289 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'SHOW_DIRECTORIES' at line 473 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 762 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_ALIGN_MEMBERS' at line 817 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_SCHEMA' at line 1158 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_DTD' at line 1164 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 1329 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MSCGEN_PATH' at line 1351 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value Using the default: a4! warning: doxygen no longer ships with the FreeSans font. You may want to clear or change DOT_FONTNAME. Otherwise you run the risk that the wrong font is being used for dot generated graphs. Doxygen version used: 1.9.1 Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /<>/openmmapi Searching for files in directory /<>/openmmapi/include Searching for files in directory /<>/openmmapi/include/openmm Searching for files in directory /<>/openmmapi/include/openmm/internal Searching for files in directory /<>/openmmapi/src Searching for files in directory /<>/plugins/amoeba/openmmapi Searching for files in directory /<>/plugins/amoeba/openmmapi/include Searching for files in directory /<>/plugins/amoeba/openmmapi/include/openmm Searching for files in directory /<>/plugins/amoeba/openmmapi/include/openmm/internal Searching for files in directory /<>/plugins/amoeba/openmmapi/src Searching for files in directory /<>/plugins/rpmd/openmmapi Searching for files in directory /<>/plugins/rpmd/openmmapi/include Searching for files in directory /<>/plugins/rpmd/openmmapi/include/openmm Searching for files in directory /<>/plugins/rpmd/openmmapi/include/openmm/internal Searching for files in directory /<>/plugins/rpmd/openmmapi/src Searching for files in directory /<>/plugins/drude/openmmapi Searching for files in directory /<>/plugins/drude/openmmapi/include Searching for files in directory /<>/plugins/drude/openmmapi/include/openmm Searching for files in directory /<>/plugins/drude/openmmapi/include/openmm/internal Searching for files in directory /<>/plugins/drude/openmmapi/src Reading and parsing tag files Parsing files Preprocessing /<>/openmmapi/include/openmm/AndersenThermostat.h... Parsing file /<>/openmmapi/include/openmm/AndersenThermostat.h... Preprocessing /<>/openmmapi/include/openmm/BrownianIntegrator.h... Parsing file /<>/openmmapi/include/openmm/BrownianIntegrator.h... Preprocessing /<>/openmmapi/include/openmm/CMAPTorsionForce.h... Parsing file /<>/openmmapi/include/openmm/CMAPTorsionForce.h... Preprocessing /<>/openmmapi/include/openmm/CMMotionRemover.h... Parsing file /<>/openmmapi/include/openmm/CMMotionRemover.h... Preprocessing /<>/openmmapi/include/openmm/CompoundIntegrator.h... Parsing file /<>/openmmapi/include/openmm/CompoundIntegrator.h... Preprocessing /<>/openmmapi/include/openmm/Context.h... Parsing file /<>/openmmapi/include/openmm/Context.h... Preprocessing /<>/openmmapi/include/openmm/CustomAngleForce.h... Parsing file /<>/openmmapi/include/openmm/CustomAngleForce.h... Preprocessing /<>/openmmapi/include/openmm/CustomBondForce.h... Parsing file /<>/openmmapi/include/openmm/CustomBondForce.h... Preprocessing /<>/openmmapi/include/openmm/CustomCentroidBondForce.h... Parsing file /<>/openmmapi/include/openmm/CustomCentroidBondForce.h... Preprocessing /<>/openmmapi/include/openmm/CustomCompoundBondForce.h... Parsing file /<>/openmmapi/include/openmm/CustomCompoundBondForce.h... Preprocessing /<>/openmmapi/include/openmm/CustomCVForce.h... Parsing file /<>/openmmapi/include/openmm/CustomCVForce.h... Preprocessing /<>/openmmapi/include/openmm/CustomExternalForce.h... Parsing file /<>/openmmapi/include/openmm/CustomExternalForce.h... Preprocessing /<>/openmmapi/include/openmm/CustomGBForce.h... Parsing file /<>/openmmapi/include/openmm/CustomGBForce.h... Preprocessing /<>/openmmapi/include/openmm/CustomHbondForce.h... Parsing file /<>/openmmapi/include/openmm/CustomHbondForce.h... Preprocessing /<>/openmmapi/include/openmm/CustomIntegrator.h... Parsing file /<>/openmmapi/include/openmm/CustomIntegrator.h... Preprocessing /<>/openmmapi/include/openmm/CustomManyParticleForce.h... Parsing file /<>/openmmapi/include/openmm/CustomManyParticleForce.h... Preprocessing /<>/openmmapi/include/openmm/CustomNonbondedForce.h... Parsing file /<>/openmmapi/include/openmm/CustomNonbondedForce.h... Preprocessing /<>/openmmapi/include/openmm/CustomTorsionForce.h... Parsing file /<>/openmmapi/include/openmm/CustomTorsionForce.h... Preprocessing /<>/openmmapi/include/openmm/Force.h... Parsing file /<>/openmmapi/include/openmm/Force.h... Preprocessing /<>/openmmapi/include/openmm/GayBerneForce.h... Parsing file /<>/openmmapi/include/openmm/GayBerneForce.h... Preprocessing /<>/openmmapi/include/openmm/GBSAOBCForce.h... Parsing file /<>/openmmapi/include/openmm/GBSAOBCForce.h... Preprocessing /<>/openmmapi/include/openmm/HarmonicAngleForce.h... Parsing file /<>/openmmapi/include/openmm/HarmonicAngleForce.h... Preprocessing /<>/openmmapi/include/openmm/HarmonicBondForce.h... Parsing file /<>/openmmapi/include/openmm/HarmonicBondForce.h... Preprocessing /<>/openmmapi/include/openmm/Integrator.h... Parsing file /<>/openmmapi/include/openmm/Integrator.h... Preprocessing /<>/openmmapi/include/openmm/LangevinIntegrator.h... Parsing file /<>/openmmapi/include/openmm/LangevinIntegrator.h... Preprocessing /<>/openmmapi/include/openmm/LangevinMiddleIntegrator.h... Parsing file /<>/openmmapi/include/openmm/LangevinMiddleIntegrator.h... Preprocessing /<>/openmmapi/include/openmm/LocalEnergyMinimizer.h... Parsing file /<>/openmmapi/include/openmm/LocalEnergyMinimizer.h... Preprocessing /<>/openmmapi/include/openmm/MonteCarloAnisotropicBarostat.h... Parsing file /<>/openmmapi/include/openmm/MonteCarloAnisotropicBarostat.h... Preprocessing /<>/openmmapi/include/openmm/MonteCarloBarostat.h... Parsing file /<>/openmmapi/include/openmm/MonteCarloBarostat.h... Preprocessing /<>/openmmapi/include/openmm/MonteCarloMembraneBarostat.h... Parsing file /<>/openmmapi/include/openmm/MonteCarloMembraneBarostat.h... Preprocessing /<>/openmmapi/include/openmm/NonbondedForce.h... Parsing file /<>/openmmapi/include/openmm/NonbondedForce.h... Preprocessing /<>/openmmapi/include/openmm/NoseHooverChain.h... Parsing file /<>/openmmapi/include/openmm/NoseHooverChain.h... Preprocessing /<>/openmmapi/include/openmm/NoseHooverIntegrator.h... Parsing file /<>/openmmapi/include/openmm/NoseHooverIntegrator.h... Preprocessing /<>/openmmapi/include/openmm/OpenMMException.h... Parsing file /<>/openmmapi/include/openmm/OpenMMException.h... Preprocessing /<>/openmmapi/include/openmm/PeriodicTorsionForce.h... Parsing file /<>/openmmapi/include/openmm/PeriodicTorsionForce.h... Preprocessing /<>/openmmapi/include/openmm/RBTorsionForce.h... Parsing file /<>/openmmapi/include/openmm/RBTorsionForce.h... Preprocessing /<>/openmmapi/include/openmm/RMSDForce.h... Parsing file /<>/openmmapi/include/openmm/RMSDForce.h... Preprocessing /<>/openmmapi/include/openmm/State.h... Parsing file /<>/openmmapi/include/openmm/State.h... Preprocessing /<>/openmmapi/include/openmm/System.h... Parsing file /<>/openmmapi/include/openmm/System.h... Preprocessing /<>/openmmapi/include/openmm/TabulatedFunction.h... Parsing file /<>/openmmapi/include/openmm/TabulatedFunction.h... Preprocessing /<>/openmmapi/include/openmm/Units.h... Parsing file /<>/openmmapi/include/openmm/Units.h... Preprocessing /<>/openmmapi/include/openmm/VariableLangevinIntegrator.h... Parsing file /<>/openmmapi/include/openmm/VariableLangevinIntegrator.h... Preprocessing /<>/openmmapi/include/openmm/VariableVerletIntegrator.h... Parsing file /<>/openmmapi/include/openmm/VariableVerletIntegrator.h... Preprocessing /<>/openmmapi/include/openmm/Vec3.h... Parsing file /<>/openmmapi/include/openmm/Vec3.h... Preprocessing /<>/openmmapi/include/openmm/VerletIntegrator.h... Parsing file /<>/openmmapi/include/openmm/VerletIntegrator.h... Preprocessing /<>/openmmapi/include/openmm/VirtualSite.h... Parsing file /<>/openmmapi/include/openmm/VirtualSite.h... Preprocessing /<>/openmmapi/include/OpenMM.h... Parsing file /<>/openmmapi/include/OpenMM.h... Preprocessing /<>/olla/include/openmm/Platform.h... Parsing file /<>/olla/include/openmm/Platform.h... Preprocessing /<>/serialization/include/openmm/serialization/SerializationNode.h... Parsing file /<>/serialization/include/openmm/serialization/SerializationNode.h... Preprocessing /<>/serialization/include/openmm/serialization/SerializationProxy.h... Parsing file /<>/serialization/include/openmm/serialization/SerializationProxy.h... Preprocessing /<>/serialization/include/openmm/serialization/XmlSerializer.h... Parsing file /<>/serialization/include/openmm/serialization/XmlSerializer.h... Preprocessing /<>/plugins/amoeba/openmmapi/include/openmm/AmoebaGeneralizedKirkwoodForce.h... Parsing file /<>/plugins/amoeba/openmmapi/include/openmm/AmoebaGeneralizedKirkwoodForce.h... Preprocessing /<>/plugins/amoeba/openmmapi/include/openmm/AmoebaMultipoleForce.h... Parsing file /<>/plugins/amoeba/openmmapi/include/openmm/AmoebaMultipoleForce.h... Preprocessing /<>/plugins/amoeba/openmmapi/include/openmm/AmoebaTorsionTorsionForce.h... Parsing file /<>/plugins/amoeba/openmmapi/include/openmm/AmoebaTorsionTorsionForce.h... Preprocessing /<>/plugins/amoeba/openmmapi/include/openmm/AmoebaVdwForce.h... Parsing file /<>/plugins/amoeba/openmmapi/include/openmm/AmoebaVdwForce.h... Preprocessing /<>/plugins/amoeba/openmmapi/include/openmm/AmoebaWcaDispersionForce.h... Parsing file /<>/plugins/amoeba/openmmapi/include/openmm/AmoebaWcaDispersionForce.h... Preprocessing /<>/plugins/amoeba/openmmapi/include/openmm/HippoNonbondedForce.h... Parsing file /<>/plugins/amoeba/openmmapi/include/openmm/HippoNonbondedForce.h... Preprocessing /<>/plugins/amoeba/openmmapi/include/OpenMMAmoeba.h... Parsing file /<>/plugins/amoeba/openmmapi/include/OpenMMAmoeba.h... Preprocessing /<>/plugins/rpmd/openmmapi/include/openmm/RPMDIntegrator.h... Parsing file /<>/plugins/rpmd/openmmapi/include/openmm/RPMDIntegrator.h... Preprocessing /<>/plugins/rpmd/openmmapi/include/openmm/RPMDMonteCarloBarostat.h... Parsing file /<>/plugins/rpmd/openmmapi/include/openmm/RPMDMonteCarloBarostat.h... Preprocessing /<>/plugins/drude/openmmapi/include/openmm/DrudeForce.h... Parsing file /<>/plugins/drude/openmmapi/include/openmm/DrudeForce.h... Preprocessing /<>/plugins/drude/openmmapi/include/openmm/DrudeIntegrator.h... Parsing file /<>/plugins/drude/openmmapi/include/openmm/DrudeIntegrator.h... Preprocessing /<>/plugins/drude/openmmapi/include/openmm/DrudeLangevinIntegrator.h... Parsing file /<>/plugins/drude/openmmapi/include/openmm/DrudeLangevinIntegrator.h... Preprocessing /<>/plugins/drude/openmmapi/include/openmm/DrudeNoseHooverIntegrator.h... Parsing file /<>/plugins/drude/openmmapi/include/openmm/DrudeNoseHooverIntegrator.h... Preprocessing /<>/plugins/drude/openmmapi/include/openmm/DrudeSCFIntegrator.h... Parsing file /<>/plugins/drude/openmmapi/include/openmm/DrudeSCFIntegrator.h... Preprocessing /<>/plugins/drude/openmmapi/include/OpenMMDrude.h... Parsing file /<>/plugins/drude/openmmapi/include/OpenMMDrude.h... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Computing nesting relations for classes... Associating documentation with classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file /<>/olla/include/openmm/Platform.h... Generating code for file /<>/openmmapi/include/OpenMM.h... Generating code for file /<>/openmmapi/include/openmm/AndersenThermostat.h... Generating code for file /<>/openmmapi/include/openmm/BrownianIntegrator.h... Generating code for file /<>/openmmapi/include/openmm/CMAPTorsionForce.h... Generating code for file /<>/openmmapi/include/openmm/CMMotionRemover.h... Generating code for file /<>/openmmapi/include/openmm/CompoundIntegrator.h... Generating code for file /<>/openmmapi/include/openmm/Context.h... Generating code for file /<>/openmmapi/include/openmm/CustomAngleForce.h... Generating code for file /<>/openmmapi/include/openmm/CustomBondForce.h... Generating code for file /<>/openmmapi/include/openmm/CustomCentroidBondForce.h... Generating code for file /<>/openmmapi/include/openmm/CustomCompoundBondForce.h... Generating code for file /<>/openmmapi/include/openmm/CustomCVForce.h... Generating code for file /<>/openmmapi/include/openmm/CustomExternalForce.h... Generating code for file /<>/openmmapi/include/openmm/CustomGBForce.h... Generating code for file /<>/openmmapi/include/openmm/CustomHbondForce.h... Generating code for file /<>/openmmapi/include/openmm/CustomIntegrator.h... Generating code for file /<>/openmmapi/include/openmm/CustomManyParticleForce.h... Generating code for file /<>/openmmapi/include/openmm/CustomNonbondedForce.h... Generating code for file /<>/openmmapi/include/openmm/CustomTorsionForce.h... Generating code for file /<>/openmmapi/include/openmm/Force.h... Generating code for file /<>/openmmapi/include/openmm/GayBerneForce.h... Generating code for file /<>/openmmapi/include/openmm/GBSAOBCForce.h... Generating code for file /<>/openmmapi/include/openmm/HarmonicAngleForce.h... Generating code for file /<>/openmmapi/include/openmm/HarmonicBondForce.h... Generating code for file /<>/openmmapi/include/openmm/Integrator.h... Generating code for file /<>/openmmapi/include/openmm/LangevinIntegrator.h... Generating code for file /<>/openmmapi/include/openmm/LangevinMiddleIntegrator.h... Generating code for file /<>/openmmapi/include/openmm/LocalEnergyMinimizer.h... Generating code for file /<>/openmmapi/include/openmm/MonteCarloAnisotropicBarostat.h... Generating code for file /<>/openmmapi/include/openmm/MonteCarloBarostat.h... Generating code for file /<>/openmmapi/include/openmm/MonteCarloMembraneBarostat.h... Generating code for file /<>/openmmapi/include/openmm/NonbondedForce.h... Generating code for file /<>/openmmapi/include/openmm/NoseHooverChain.h... Generating code for file /<>/openmmapi/include/openmm/NoseHooverIntegrator.h... Generating code for file /<>/openmmapi/include/openmm/OpenMMException.h... Generating code for file /<>/openmmapi/include/openmm/PeriodicTorsionForce.h... Generating code for file /<>/openmmapi/include/openmm/RBTorsionForce.h... Generating code for file /<>/openmmapi/include/openmm/RMSDForce.h... Generating code for file /<>/openmmapi/include/openmm/State.h... Generating code for file /<>/openmmapi/include/openmm/System.h... Generating code for file /<>/openmmapi/include/openmm/TabulatedFunction.h... Generating code for file /<>/openmmapi/include/openmm/Units.h... Generating code for file /<>/openmmapi/include/openmm/VariableLangevinIntegrator.h... Generating code for file /<>/openmmapi/include/openmm/VariableVerletIntegrator.h... Generating code for file /<>/openmmapi/include/openmm/Vec3.h... Generating code for file /<>/openmmapi/include/openmm/VerletIntegrator.h... Generating code for file /<>/openmmapi/include/openmm/VirtualSite.h... Generating code for file /<>/plugins/amoeba/openmmapi/include/openmm/AmoebaGeneralizedKirkwoodForce.h... Generating code for file /<>/plugins/amoeba/openmmapi/include/openmm/AmoebaMultipoleForce.h... Generating code for file /<>/plugins/amoeba/openmmapi/include/openmm/AmoebaTorsionTorsionForce.h... Generating code for file /<>/plugins/amoeba/openmmapi/include/openmm/AmoebaVdwForce.h... Generating code for file /<>/plugins/amoeba/openmmapi/include/openmm/AmoebaWcaDispersionForce.h... Generating code for file /<>/plugins/amoeba/openmmapi/include/openmm/HippoNonbondedForce.h... Generating code for file /<>/plugins/amoeba/openmmapi/include/OpenMMAmoeba.h... Generating code for file /<>/plugins/drude/openmmapi/include/openmm/DrudeForce.h... Generating code for file /<>/plugins/drude/openmmapi/include/openmm/DrudeIntegrator.h... Generating code for file /<>/plugins/drude/openmmapi/include/openmm/DrudeLangevinIntegrator.h... Generating code for file /<>/plugins/drude/openmmapi/include/openmm/DrudeNoseHooverIntegrator.h... Gene[ 14%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/ContextImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/ContextImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/ContextImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/ContextImpl.cpp.o -c /<>/openmmapi/src/ContextImpl.cpp [ 14%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomAngleForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomAngleForce.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomAngleForce.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomAngleForce.cpp.o -c /<>/openmmapi/src/CustomAngleForce.cpp [ 14%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomAngleForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomAngleForceImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomAngleForceImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomAngleForceImpl.cpp.o -c /<>/openmmapi/src/CustomAngleForceImpl.cpp rating code for file /<>/plugins/drude/openmmapi/include/openmm/DrudeSCFIntegrator.h... Generating code for file /<>/plugins/drude/openmmapi/include/OpenMMDrude.h... Generating code for file /<>/plugins/rpmd/openmmapi/include/openmm/RPMDIntegrator.h... Generating code for file /<>/plugins/rpmd/openmmapi/include/openmm/RPMDMonteCarloBarostat.h... Generating code for file /<>/serialization/include/openmm/serialization/SerializationNode.h... Generating code for file /<>/serialization/include/openmm/serialization/SerializationProxy.h... Generating code for file /<>/serialization/include/openmm/serialization/XmlSerializer.h... Generating file documentation... Generating docs for file /<>/openmmapi/include/openmm/Units.h... Generating page documentation... Generating docs for page deprecated... Generating group documentation... Generating class documentation... Generating namespace index... Generating docs for compound OpenMM::AndersenThermostat... Generating docs for compound OpenMM::BrownianIntegrator... Generating docs for compound OpenMM::CMAPTorsionForce... Generating docs for compound OpenMM::CMMotionRemover... Generating docs for compound OpenMM::CompoundIntegrator... Generating docs for compound OpenMM::Context... Generating docs for compound OpenMM::CustomAngleForce... Generating docs for compound OpenMM::CustomBondForce... Generating docs for compound OpenMM::CustomCentroidBondForce... Generating docs for compound OpenMM::CustomCompoundBondForce... Generating docs for compound OpenMM::CustomCVForce... Generating docs for compound OpenMM::CustomExternalForce... Generating docs for compound OpenMM::CustomGBForce... Generating docs for compound OpenMM::CustomHbondForce... Generating docs for compound OpenMM::CustomIntegrator... Generating docs for compound OpenMM::CustomManyParticleForce... Generating docs for compound OpenMM::CustomNonbondedForce... Generating docs for compound OpenMM::CustomTorsionForce... Generating docs for compound OpenMM::Force... Generating docs for compound OpenMM::GayBerneForce... Generating docs for compound OpenMM::GBSAOBCForce... Generating docs for compound OpenMM::HarmonicAngleForce... Generating docs for compound OpenMM::HarmonicBondForce... Generating docs for compound OpenMM::Integrator... Generating docs for compound OpenMM::LangevinIntegrator... Generating docs for compound OpenMM::LangevinMiddleIntegrator... Generating docs for compound OpenMM::LocalEnergyMinimizer... Generating docs for compound OpenMM::MonteCarloAnisotropicBarostat... Generating docs for compound OpenMM::MonteCarloBarostat... Generating docs for compound OpenMM::MonteCarloMembraneBarostat... Generating docs for compound OpenMM::NonbondedForce... Generating docs for compound OpenMM::NoseHooverChain... Generating docs for compound OpenMM::NoseHooverIntegrator... Generating docs for compound OpenMM::OpenMMException... Generating docs for compound OpenMM::PeriodicTorsionForce... Generating docs for compound OpenMM::RBTorsionForce... Generating docs for compound OpenMM::RMSDForce... Generating docs for compound OpenMM::State... Generating docs for compound OpenMM::System... Generating docs for compound OpenMM::TabulatedFunction... Generating docs for compound OpenMM::Continuous1DFunction... Generating docs for compound OpenMM::Continuous2DFunction... Generating docs for compound OpenMM::Continuous3DFunction... Generating docs for compound OpenMM::Discrete1DFunction... Generating docs for compound OpenMM::Discrete2DFunction... Generating docs for compound OpenMM::Discrete3DFunction... Generating docs for compound OpenMM::VariableLangevinIntegrator... Generating docs for compound OpenMM::VariableVerletIntegrator... Generating docs for compound OpenMM::Vec3... Generating docs for compound OpenMM::VerletIntegrator... Generating docs for compound OpenMM::VirtualSite... Generating docs for compound OpenMM::TwoParticleAverageSite... Generating docs for compound OpenMM::ThreeParticleAverageSite... Generating docs for compound OpenMM::OutOfPlaneSite... Generating docs for compound OpenMM::LocalCoordinatesSite... Generating docs for compound OpenMM::Platform... Generating docs for compound OpenMM::SerializationNode... Generating docs for compound OpenMM::SerializationProxy... Generating docs for compound OpenMM::XmlSerializer... Generating docs for compound OpenMM::AmoebaGeneralizedKirkwoodForce... Generating docs for compound OpenMM::AmoebaMultipoleForce... Generating docs for compound OpenMM::AmoebaTorsionTorsionForce... Generating docs for compound OpenMM::AmoebaVdwForce... Generating docs for compound OpenMM::AmoebaWcaDispersionForce... Generating docs for compound OpenMM::HippoNonbondedForce... Generating docs for compound OpenMM::RPMDIntegrator... Generating docs for compound OpenMM::RPMDMonteCarloBarostat... Generating docs for compound OpenMM::DrudeForce... Generating docs for compound OpenMM::DrudeIntegrator... Generating docs for compound OpenMM::DrudeLangevinIntegrator... Generating docs for compound OpenMM::DrudeNoseHooverIntegrator... Generating docs for compound OpenMM::DrudeSCFIntegrator... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Generating XML output... Generating XML output for class OpenMM::AmoebaGeneralizedKirkwoodForce Generating XML output for class OpenMM::AmoebaMultipoleForce Generating XML output for class OpenMM::AmoebaTorsionTorsionForce Generating XML output for class OpenMM::AmoebaVdwForce Generating XML output for class OpenMM::AmoebaWcaDispersionForce Generating XML output for class OpenMM::AndersenThermostat Generating XML output for class OpenMM::CustomAngleForce::AngleInfo Generating XML output for class OpenMM::HarmonicAngleForce::AngleInfo Generating XML output for class OpenMM::CustomAngleForce::AngleParameterInfo Generating XML output for class OpenMM::CustomBondForce::BondInfo Generating XML output for class OpenMM::CustomCentroidBondForce::BondInfo Generating XML output for class OpenMM::CustomCompoundBondForce::BondInfo Generating XML output for class OpenMM::HarmonicBondForce::BondInfo Generating XML output for class OpenMM::CustomBondForce::BondParameterInfo Generating XML output for class OpenMM::CustomCentroidBondForce::BondParameterInfo Generating XML output for class OpenMM::CustomCompoundBondForce::BondParameterInfo Generating XML output for class OpenMM::BrownianIntegrator Generating XML output for class OpenMM::CMAPTorsionForce Generating XML output for class OpenMM::CMAPTorsionForce::CMAPTorsionInfo Generating XML output for class OpenMM::CMMotionRemover Generating XML output for class OpenMM::CompoundIntegrator Generating XML output for class OpenMM::CustomGBForce::ComputationInfo Generating XML output for class OpenMM::CustomIntegrator::ComputationInfo Generating XML output for class OpenMM::Context Generating XML output for class OpenMM::Continuous1DFunction Generating XML output for class OpenMM::Continuous2DFunction Generating XML output for class OpenMM::Continuous3DFunction Generating XML output for class OpenMM::CustomAngleForce Generating XML output for class OpenMM::CustomBondForce Generating XML output for class OpenMM::CustomCentroidBondForce Generating XML output for class OpenMM::CustomCompoundBondForce Generating XML output for class OpenMM::CustomCVForce Generating XML output for class OpenMM::CustomExternalForce Generating XML output for class OpenMM::CustomGBForce Generating XML output for class OpenMM::CustomHbondForce Generating XML output for class OpenMM::CustomIntegrator Generating XML output for class OpenMM::CustomManyParticleForce Generating XML output for class OpenMM::CustomNonbondedForce Generating XML output for class OpenMM::CustomTorsionForce Generating XML output for class OpenMM::Discrete1DFunction Generating XML output for class OpenMM::Discrete2DFunction Generating XML output for class OpenMM::Discrete3DFunction Generating XML output for class OpenMM::DrudeForce Generating XML output for class OpenMM::DrudeIntegrator Generating XML output for class OpenMM::DrudeLangevinIntegrator Generating XML output for class OpenMM::DrudeNoseHooverIntegrator Generating XML output for class OpenMM::DrudeSCFIntegrator Generating XML output for class OpenMM::GayBerneForce::ExceptionInfo Generating XML output for class OpenMM::HippoNonbondedForce::ExceptionInfo Generating XML output for class OpenMM::NonbondedForce::ExceptionInfo Generating XML output for class OpenMM::NonbondedForce::ExceptionOffsetInfo Generating XML output for class OpenMM::CustomGBForce::ExclusionInfo Generating XML output for class OpenMM::CustomHbondForce::ExclusionInfo Generating XML output for class OpenMM::CustomManyParticleForce::ExclusionInfo Generating XML output for class OpenMM::CustomNonbondedForce::ExclusionInfo Generating XML output for class OpenMM::Force Generating XML output for class OpenMM::CustomCentroidBondForce::FunctionInfo Generating XML output for class OpenMM::CustomCompoundBondForce::FunctionInfo Generating XML output for class OpenMM::CustomCVForce::FunctionInfo Generating XML output for class OpenMM::CustomGBForce::FunctionInfo Generating XML output for class OpenMM::CustomHbondForce::FunctionInfo Generating XML output for class OpenMM::CustomIntegrator::FunctionInfo Generating XML output for class OpenMM::CustomManyParticleForce::FunctionInfo Generating XML output for class OpenMM::CustomNonbondedForce::FunctionInfo Generating XML output for class OpenMM::GayBerneForce Generating XML output for class OpenMM::GBSAOBCForce Generating XML output for class OpenMM::CustomAngleForce::GlobalParameterInfo Generating XML output for class OpenMM::CustomBondForce::GlobalParameterInfo Generating XML output for class OpenMM::CustomCentroidBondForce::GlobalParameterInfo Generating XML output for class OpenMM::CustomCompoundBondForce::GlobalParameterInfo Generating XML output for class OpenMM::CustomCVForce::GlobalParameterInfo Generating XML output for class OpenMM::CustomExternalForce::GlobalParameterInfo Generating XML output for class OpenMM::CustomGBForce::GlobalParameterInfo Generating XML output for class OpenMM::CustomHbondForce::GlobalParameterInfo Generating XML output for class OpenMM::CustomManyParticleForce::GlobalParameterInfo Generating XML output for class OpenMM::CustomNonbondedForce::GlobalParameterInfo Generating XML output for class OpenMM::CustomTorsionForce::GlobalParameterInfo Generating XML output for class OpenMM::NonbondedForce::GlobalParameterInfo Generating XML output for class OpenMM::CustomCentroidBondForce::GroupInfo Generating XML output for class OpenMM::CustomHbondForce::GroupInfo Generating XML output for class OpenMM::HarmonicAngleForce Generating XML output for class OpenMM::HarmonicBondForce Generating XML output for class OpenMM::HippoNonbondedForce Generating XML output for class OpenMM::Integrator Generating XML output for class OpenMM::CustomNonbondedForce::InteractionGroupInfo Generating XML output for class OpenMM::LangevinIntegrator Generating XML output for class OpenMM::LangevinMiddleIntegrator Generating XML output for class OpenMM::LocalCoordinatesSite Generating XML output for class OpenMM::LocalEnergyMinimizer Generating XML output for class OpenMM::CMAPTorsionForce::MapInfo Generating XML output for class OpenMM::MonteCarloAnisotropicBarostat Generating XML output for class OpenMM::MonteCarloBarostat Generating XML output for class OpenMM::MonteCarloMembraneBarostat Generating XML output for class OpenMM::AmoebaMultipoleForce::MultipoleInfo Generating XML output for class OpenMM::NonbondedForce Generating XML output for class OpenMM::NoseHooverChain Generating XML output for class OpenMM::NoseHooverIntegrator Generating XML output for class OpenMM::OpenMMException Generating XML output for class OpenMM::OutOfPlaneSite Generating XML output for class OpenMM::AmoebaGeneralizedKirkwoodForce::ParticleInfo Generating XML output for class OpenMM::CustomExternalForce::ParticleInfo Generating XML output for class OpenMM::CustomGBForce::ParticleInfo Generating XML output for class OpenMM::CustomManyParticleForce::ParticleInfo Generating XML output for class OpenMM::CustomNonbondedForce::ParticleInfo Generating XML output for class OpenMM::DrudeForce::ParticleInfo Generating XML output for class OpenMM::GayBerneForce::ParticleInfo Generating XML output for class OpenMM::GBSAOBCForce::ParticleInfo Generating XML output for class OpenMM::HippoNonbondedForce::ParticleInfo Generating XML output for class OpenMM::NonbondedForce::ParticleInfo Generating XML output for class OpenMM::NonbondedForce::ParticleOffsetInfo Generating XML output for class OpenMM::CustomExternalForce::ParticleParameterInfo Generating XML output for class OpenMM::CustomManyParticleForce::ParticleParameterInfo Generating XML output for class OpenMM::AmoebaVdwForce::ParticleTypeInfo Generating XML output for class OpenMM::PeriodicTorsionForce Generating XML output for class OpenMM::PeriodicTorsionForce::PeriodicTorsionInfo Generating XML output for class OpenMM::CustomHbondForce::PerPairParameterInfo Generating XML output for class OpenMM::CustomGBForce::PerParticleParameterInfo Generating XML output for class OpenMM::CustomNonbondedForce::PerParticleParameterInfo Generating XML output for class OpenMM::Platform Generating XML output for class OpenMM::RBTorsionForce Generating XML output for class OpenMM::RBTorsionForce::RBTorsionInfo Generating XML output for class OpenMM::RMSDForce Generating XML output for class OpenMM::RPMDIntegrator Generating XML output for class OpenMM::RPMDMonteCarloBarostat Generating XML output for class OpenMM::DrudeForce::ScreenedPairInfo Generating XML output for class OpenMM::SerializationNode Generating XML output for class OpenMM::SerializationProxy Generating XML output for class OpenMM::State Generating XML output for class OpenMM::State::StateBuilder Generating XML output for class OpenMM::System Generating XML output for class OpenMM::TabulatedFunction Generating XML output for class OpenMM::ThreeParticleAverageSite Generating XML output for class OpenMM::CustomTorsionForce::TorsionInfo Generating XML output for class OpenMM::CustomTorsionForce::TorsionParameterInfo Generating XML output for class OpenMM::AmoebaTorsionTorsionForce::TorsionTorsionGridInfo Generating XML output for class OpenMM::AmoebaTorsionTorsionForce::TorsionTorsionInfo Generating XML output for class OpenMM::TwoParticleAverageSite Generating XML output for class OpenMM::AmoebaVdwForce::TypePairInfo Generating XML output for class OpenMM::CustomCVForce::VariableInfo Generating XML output for class OpenMM::VariableLangevinIntegrator Generating XML output for class OpenMM::VariableVerletIntegrator Generating XML output for class OpenMM::AmoebaVdwForce::VdwInfo Generating XML output for class OpenMM::Vec3 Generating XML output for class OpenMM::VerletIntegrator Generating XML output for class OpenMM::VirtualSite Generating XML output for class OpenMM::AmoebaWcaDispersionForce::WcaDispersionInfo Generating XML output for class OpenMM::XmlSerializer Generating XML output for namespace OpenMM Generating XML output for namespace std Generating XML output for file Platform.h Generating XML output for file OpenMM.h Generating XML output for file AndersenThermostat.h Generating XML output for file BrownianIntegrator.h Generating XML output for file CMAPTorsionForce.h Generating XML output for file CMMotionRemover.h Generating XML output for file CompoundIntegrator.h Generating XML output for file Context.h Generating XML output for file CustomAngleForce.h Generating XML output for file CustomBondForce.h Generating XML output for file CustomCentroidBondForce.h Generating XML output for file CustomCompoundBondForce.h Generating XML output for file CustomCVForce.h Generating XML output for file CustomExternalForce.h Generating XML output for file CustomGBForce.h Generating XML output for file CustomHbondForce.h Generating XML output for file CustomIntegrator.h Generating XML output for file CustomManyParticleForce.h Generating XML output for file CustomNonbondedForce.h Generating XML output for file CustomTorsionForce.h Generating XML output for file Force.h Generating XML output for file GayBerneForce.h Generating XML output for file GBSAOBCForce.h Generating XML output for file HarmonicAngleForce.h Generating XML output for file HarmonicBondForce.h Generating XML output for file Integrator.h Generating XML output for file LangevinIntegrator.h Generating XML output for file LangevinMiddleIntegrator.h Generating XML output for file LocalEnergyMinimizer.h Generating XML output for file MonteCarloAnisotropicBarostat.h Generating XML output for file MonteCarloBarostat.h Generating XML output for file MonteCarloMembraneBarostat.h Generating XML output for file NonbondedForce.h Generating XML output for file NoseHooverChain.h Generating XML output for file NoseHooverIntegrator.h Generating XML output for file OpenMMException.h Generating XML output for file PeriodicTorsionForce.h Generating XML output for file RBTorsionForce.h Generating XML output for file RMSDForce.h Generating XML output for file State.h Generating XML output for file System.h Generating XML output for file TabulatedFunction.h Generating XML output for file Units.h Generating XML output for file VariableLangevinIntegrator.h Generating XML output for file VariableVerletIntegrator.h Generating XML output for file Vec3.h Generating XML output for file VerletIntegrator.h Generating XML output for file VirtualSite.h Generating XML output for file AmoebaGeneralizedKirkwoodForce.h Generating XML output for file AmoebaMultipoleForce.h Generating XML output for file AmoebaTorsionTorsionForce.h Generating XML output for file AmoebaVdwForce.h Generating XML output for file AmoebaWcaDispersionForce.h Generating XML output for file HippoNonbondedForce.h Generating XML output for file OpenMMAmoeba.h Generating XML output for file DrudeForce.h Generating XML output for file DrudeIntegrator.h Generating XML output for file DrudeLangevinIntegrator.h Generating XML output for file DrudeNoseHooverIntegrator.h Generating XML output for file DrudeSCFIntegrator.h Generating XML output for file OpenMMDrude.h Generating XML output for file RPMDIntegrator.h Generating XML output for file RPMDMonteCarloBarostat.h Generating XML output for file SerializationNode.h Generating XML output for file SerializationProxy.h Generating XML output for file XmlSerializer.h Generating XML output for page deprecated Generate XML output for dir /<>/plugins/amoeba/ Generate XML output for dir /<>/plugins/drude/ Generate XML output for dir /<>/olla/include/ Generate XML output for dir /<>/serialization/include/ Generate XML output for dir /<>/plugins/rpmd/openmmapi/include/ Generate XML output for dir /<>/plugins/drude/openmmapi/include/ Generate XML output for dir /<>/plugins/amoeba/openmmapi/include/ Generate XML output for dir /<>/openmmapi/include/ Generate XML output for dir /<>/olla/ Generate XML output for dir /<>/openmmapi/include/openmm/ Generate XML output for dir /<>/plugins/amoeba/openmmapi/include/openmm/ Generate XML output for dir /<>/plugins/drude/openmmapi/include/openmm/ Generate XML output for dir /<>/olla/include/openmm/ Generate XML output for dir /<>/plugins/rpmd/openmmapi/include/openmm/ Generate XML output for dir /<>/serialization/include/openmm/ Generate XML output for dir /<>/plugins/amoeba/openmmapi/ Generate XML output for dir /<>/plugins/drude/openmmapi/ Generate XML output for dir /<>/openmmapi/ Generate XML output for dir /<>/plugins/rpmd/openmmapi/ Generate XML output for dir /<>/plugins/ Generate XML output for dir /<>/plugins/rpmd/ Generate XML output for dir /<>/serialization/ Generate XML output for dir /<>/serialization/include/openmm/serialization/ Running plantuml with JAVA... lookup cache used 3421/65536 hits=20780 misses=3647 finished... [ 14%] CMake-copying file /<>/wrappers/python/src/swig_doxygen/swigInputConfig.py to /<>/obj-x86_64-linux-gnu/python/src/swig_doxygen/swigInputConfig.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/src/swig_doxygen/swigInputConfig.py /<>/obj-x86_64-linux-gnu/python/src/swig_doxygen/swigInputConfig.py [ 17%] CMake-copying file /<>/wrappers/python/src/swig_doxygen/swigInputBuilder.py to /<>/obj-x86_64-linux-gnu/python/src/swig_doxygen/swigInputBuilder.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/src/swig_doxygen/swigInputBuilder.py /<>/obj-x86_64-linux-gnu/python/src/swig_doxygen/swigInputBuilder.py [ 17%] CMake-copying file /<>/wrappers/python/src/swig_doxygen/swig_lib/python/exceptions.i to /<>/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/exceptions.i cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/src/swig_doxygen/swig_lib/python/exceptions.i /<>/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/exceptions.i [ 17%] CMake-copying file /<>/wrappers/python/src/swig_doxygen/swig_lib/python/extend.i to /<>/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/extend.i cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/src/swig_doxygen/swig_lib/python/extend.i /<>/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/extend.i [ 17%] CMake-copying file /<>/wrappers/python/src/swig_doxygen/swig_lib/python/features.i to /<>/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/features.i cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/src/swig_doxygen/swig_lib/python/features.i /<>/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/features.i [ 17%] CMake-copying file /<>/wrappers/python/src/swig_doxygen/swig_lib/python/header.i to /<>/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/header.i cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/src/swig_doxygen/swig_lib/python/header.i /<>/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/header.i [ 17%] CMake-copying file /<>/wrappers/python/src/swig_doxygen/swig_lib/python/pythoncode.i to /<>/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/pythoncode.i cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/src/swig_doxygen/swig_lib/python/pythoncode.i /<>/obj-x86_64-linux-gnu/python/src/swig_doxygen/swig_lib/python/pythoncode.i [ 17%] CMake-copying file /<>/wrappers/python/openmm/testInstallation.py to /<>/obj-x86_64-linux-gnu/python/openmm/testInstallation.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/testInstallation.py /<>/obj-x86_64-linux-gnu/python/openmm/testInstallation.py [ 17%] CMake-copying file /<>/wrappers/python/openmm/unit/__init__.py to /<>/obj-x86_64-linux-gnu/python/openmm/unit/__init__.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/unit/__init__.py /<>/obj-x86_64-linux-gnu/python/openmm/unit/__init__.py [ 17%] CMake-copying file /<>/wrappers/python/openmm/unit/basedimension.py to /<>/obj-x86_64-linux-gnu/python/openmm/unit/basedimension.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/unit/basedimension.py /<>/obj-x86_64-linux-gnu/python/openmm/unit/basedimension.py [ 17%] CMake-copying file /<>/wrappers/python/openmm/unit/baseunit.py to /<>/obj-x86_64-linux-gnu/python/openmm/unit/baseunit.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/unit/baseunit.py /<>/obj-x86_64-linux-gnu/python/openmm/unit/baseunit.py [ 17%] CMake-copying file /<>/wrappers/python/openmm/unit/constants.py to /<>/obj-x86_64-linux-gnu/python/openmm/unit/constants.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/unit/constants.py /<>/obj-x86_64-linux-gnu/python/openmm/unit/constants.py [ 19%] CMake-copying file /<>/wrappers/python/openmm/unit/doctests.py to /<>/obj-x86_64-linux-gnu/python/openmm/unit/doctests.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/unit/doctests.py /<>/obj-x86_64-linux-gnu/python/openmm/unit/doctests.py [ 19%] CMake-copying file /<>/wrappers/python/openmm/unit/mymatrix.py to /<>/obj-x86_64-linux-gnu/python/openmm/unit/mymatrix.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/unit/mymatrix.py /<>/obj-x86_64-linux-gnu/python/openmm/unit/mymatrix.py [ 19%] CMake-copying file /<>/wrappers/python/openmm/unit/prefix.py to /<>/obj-x86_64-linux-gnu/python/openmm/unit/prefix.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/unit/prefix.py /<>/obj-x86_64-linux-gnu/python/openmm/unit/prefix.py [ 19%] CMake-copying file /<>/wrappers/python/openmm/unit/quantity.py to /<>/obj-x86_64-linux-gnu/python/openmm/unit/quantity.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/unit/quantity.py /<>/obj-x86_64-linux-gnu/python/openmm/unit/quantity.py [ 19%] CMake-copying file /<>/wrappers/python/openmm/unit/standard_dimensions.py to /<>/obj-x86_64-linux-gnu/python/openmm/unit/standard_dimensions.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/unit/standard_dimensions.py /<>/obj-x86_64-linux-gnu/python/openmm/unit/standard_dimensions.py [ 19%] CMake-copying file /<>/wrappers/python/openmm/unit/unit.py to /<>/obj-x86_64-linux-gnu/python/openmm/unit/unit.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/unit/unit.py /<>/obj-x86_64-linux-gnu/python/openmm/unit/unit.py [ 19%] CMake-copying file /<>/wrappers/python/openmm/unit/unit_definitions.py to /<>/obj-x86_64-linux-gnu/python/openmm/unit/unit_definitions.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/unit/unit_definitions.py /<>/obj-x86_64-linux-gnu/python/openmm/unit/unit_definitions.py [ 19%] CMake-copying file /<>/wrappers/python/openmm/unit/unit_math.py to /<>/obj-x86_64-linux-gnu/python/openmm/unit/unit_math.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/unit/unit_math.py /<>/obj-x86_64-linux-gnu/python/openmm/unit/unit_math.py [ 19%] CMake-copying file /<>/wrappers/python/openmm/unit/unit_operators.py to /<>/obj-x86_64-linux-gnu/python/openmm/unit/unit_operators.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/unit/unit_operators.py /<>/obj-x86_64-linux-gnu/python/openmm/unit/unit_operators.py [ 19%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomBondForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomBondForce.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomBondForce.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomBondForce.cpp.o -c /<>/openmmapi/src/CustomBondForce.cpp [ 19%] CMake-copying file /<>/wrappers/python/openmm/vec3.py to /<>/obj-x86_64-linux-gnu/python/openmm/vec3.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/openmm/vec3.py /<>/obj-x86_64-linux-gnu/python/openmm/vec3.py [ 19%] CMake-copying file /<>/wrappers/python/simtk/__init__.py to /<>/obj-x86_64-linux-gnu/python/simtk/__init__.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/simtk/__init__.py /<>/obj-x86_64-linux-gnu/python/simtk/__init__.py [ 19%] CMake-copying file /<>/wrappers/python/simtk/openmm/__init__.py to /<>/obj-x86_64-linux-gnu/python/simtk/openmm/__init__.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/simtk/openmm/__init__.py /<>/obj-x86_64-linux-gnu/python/simtk/openmm/__init__.py [ 19%] CMake-copying file /<>/wrappers/python/simtk/openmm/app/__init__.py to /<>/obj-x86_64-linux-gnu/python/simtk/openmm/app/__init__.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/simtk/openmm/app/__init__.py /<>/obj-x86_64-linux-gnu/python/simtk/openmm/app/__init__.py [ 19%] CMake-copying file /<>/wrappers/python/simtk/unit/__init__.py to /<>/obj-x86_64-linux-gnu/python/simtk/unit/__init__.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/simtk/unit/__init__.py /<>/obj-x86_64-linux-gnu/python/simtk/unit/__init__.py [ 19%] CMake-copying file /<>/wrappers/python/src/swig_doxygen/doxygen/buildXML.sh to /<>/obj-x86_64-linux-gnu/python/src/swig_doxygen/doxygen/buildXML.sh cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/src/swig_doxygen/doxygen/buildXML.sh /<>/obj-x86_64-linux-gnu/python/src/swig_doxygen/doxygen/buildXML.sh [ 19%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomBondForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomBondForceImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomBondForceImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomBondForceImpl.cpp.o -c /<>/openmmapi/src/CustomBondForceImpl.cpp [ 19%] CMake-copying file /<>/wrappers/python/tests/TestAPIUnits.py to /<>/obj-x86_64-linux-gnu/python/tests/TestAPIUnits.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/TestAPIUnits.py /<>/obj-x86_64-linux-gnu/python/tests/TestAPIUnits.py [ 19%] CMake-copying file /<>/wrappers/python/tests/TestAmberInpcrdFile.py to /<>/obj-x86_64-linux-gnu/python/tests/TestAmberInpcrdFile.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/TestAmberInpcrdFile.py /<>/obj-x86_64-linux-gnu/python/tests/TestAmberInpcrdFile.py [ 19%] CMake-copying file /<>/wrappers/python/tests/TestAmberPrmtopFile.py to /<>/obj-x86_64-linux-gnu/python/tests/TestAmberPrmtopFile.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/TestAmberPrmtopFile.py /<>/obj-x86_64-linux-gnu/python/tests/TestAmberPrmtopFile.py [ 19%] CMake-copying file /<>/wrappers/python/tests/TestBytes.py to /<>/obj-x86_64-linux-gnu/python/tests/TestBytes.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/TestBytes.py /<>/obj-x86_64-linux-gnu/python/tests/TestBytes.py [ 19%] CMake-copying file /<>/wrappers/python/tests/TestCharmmFiles.py to /<>/obj-x86_64-linux-gnu/python/tests/TestCharmmFiles.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/TestCharmmFiles.py /<>/obj-x86_64-linux-gnu/python/tests/TestCharmmFiles.py [ 19%] CMake-copying file /<>/wrappers/python/tests/TestCheckpointReporter.py to /<>/obj-x86_64-linux-gnu/python/tests/TestCheckpointReporter.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/TestCheckpointReporter.py /<>/obj-x86_64-linux-gnu/python/tests/TestCheckpointReporter.py [ 19%] CMake-copying file /<>/wrappers/python/tests/TestDcdFile.py to /<>/obj-x86_64-linux-gnu/python/tests/TestDcdFile.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/TestDcdFile.py /<>/obj-x86_64-linux-gnu/python/tests/TestDcdFile.py [ 19%] CMake-copying file /<>/wrappers/python/tests/TestDesmondDMSFile.py to /<>/obj-x86_64-linux-gnu/python/tests/TestDesmondDMSFile.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/TestDesmondDMSFile.py /<>/obj-x86_64-linux-gnu/python/tests/TestDesmondDMSFile.py [ 19%] CMake-copying file /<>/wrappers/python/tests/TestElement.py to /<>/obj-x86_64-linux-gnu/python/tests/TestElement.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/TestElement.py /<>/obj-x86_64-linux-gnu/python/tests/TestElement.py [ 21%] CMake-copying file /<>/wrappers/python/tests/TestForceField.py to /<>/obj-x86_64-linux-gnu/python/tests/TestForceField.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/TestForceField.py /<>/obj-x86_64-linux-gnu/python/tests/TestForceField.py [ 21%] CMake-copying file /<>/wrappers/python/tests/TestForceGroups.py to /<>/obj-x86_64-linux-gnu/python/tests/TestForceGroups.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/TestForceGroups.py /<>/obj-x86_64-linux-gnu/python/tests/TestForceGroups.py [ 21%] CMake-copying file /<>/wrappers/python/tests/TestGenerators.py to /<>/obj-x86_64-linux-gnu/python/tests/TestGenerators.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/TestGenerators.py /<>/obj-x86_64-linux-gnu/python/tests/TestGenerators.py [ 21%] CMake-copying file /<>/wrappers/python/tests/TestGromacsGroFile.py to /<>/obj-x86_64-linux-gnu/python/tests/TestGromacsGroFile.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/TestGromacsGroFile.py /<>/obj-x86_64-linux-gnu/python/tests/TestGromacsGroFile.py [ 21%] CMake-copying file /<>/wrappers/python/tests/TestGromacsTopFile.py to /<>/obj-x86_64-linux-gnu/python/tests/TestGromacsTopFile.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/TestGromacsTopFile.py /<>/obj-x86_64-linux-gnu/python/tests/TestGromacsTopFile.py [ 21%] CMake-copying file /<>/wrappers/python/tests/TestIntegrators.py to /<>/obj-x86_64-linux-gnu/python/tests/TestIntegrators.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/TestIntegrators.py /<>/obj-x86_64-linux-gnu/python/tests/TestIntegrators.py [ 21%] CMake-copying file /<>/wrappers/python/tests/TestMetadynamics.py to /<>/obj-x86_64-linux-gnu/python/tests/TestMetadynamics.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/TestMetadynamics.py /<>/obj-x86_64-linux-gnu/python/tests/TestMetadynamics.py [ 21%] CMake-copying file /<>/wrappers/python/tests/TestModeller.py to /<>/obj-x86_64-linux-gnu/python/tests/TestModeller.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/TestModeller.py /<>/obj-x86_64-linux-gnu/python/tests/TestModeller.py [ 21%] CMake-copying file /<>/wrappers/python/tests/TestNumpyCompatibility.py to /<>/obj-x86_64-linux-gnu/python/tests/TestNumpyCompatibility.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/TestNumpyCompatibility.py /<>/obj-x86_64-linux-gnu/python/tests/TestNumpyCompatibility.py [ 21%] CMake-copying file /<>/wrappers/python/tests/TestPatches.py to /<>/obj-x86_64-linux-gnu/python/tests/TestPatches.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different 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CMake-copying file /<>/wrappers/python/tests/TestSimulatedTempering.py to /<>/obj-x86_64-linux-gnu/python/tests/TestSimulatedTempering.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/TestSimulatedTempering.py /<>/obj-x86_64-linux-gnu/python/tests/TestSimulatedTempering.py [ 21%] CMake-copying file /<>/wrappers/python/tests/TestSimulation.py to /<>/obj-x86_64-linux-gnu/python/tests/TestSimulation.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/TestSimulation.py /<>/obj-x86_64-linux-gnu/python/tests/TestSimulation.py [ 21%] CMake-copying file /<>/wrappers/python/tests/TestSwigWrappers.py to /<>/obj-x86_64-linux-gnu/python/tests/TestSwigWrappers.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/TestSwigWrappers.py /<>/obj-x86_64-linux-gnu/python/tests/TestSwigWrappers.py [ 21%] CMake-copying file /<>/wrappers/python/tests/TestTopology.py to /<>/obj-x86_64-linux-gnu/python/tests/TestTopology.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/TestTopology.py /<>/obj-x86_64-linux-gnu/python/tests/TestTopology.py [ 23%] CMake-copying file /<>/wrappers/python/tests/TestUnitCell.py to /<>/obj-x86_64-linux-gnu/python/tests/TestUnitCell.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/TestUnitCell.py /<>/obj-x86_64-linux-gnu/python/tests/TestUnitCell.py [ 23%] CMake-copying file /<>/wrappers/python/tests/TestUnits.py to /<>/obj-x86_64-linux-gnu/python/tests/TestUnits.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/TestUnits.py /<>/obj-x86_64-linux-gnu/python/tests/TestUnits.py [ 23%] CMake-copying file /<>/wrappers/python/tests/TestVec3.py to /<>/obj-x86_64-linux-gnu/python/tests/TestVec3.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/TestVec3.py /<>/obj-x86_64-linux-gnu/python/tests/TestVec3.py [ 23%] CMake-copying file /<>/wrappers/python/tests/pytest.ini to /<>/obj-x86_64-linux-gnu/python/tests/pytest.ini cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/pytest.ini /<>/obj-x86_64-linux-gnu/python/tests/pytest.ini [ 23%] CMake-copying file /<>/wrappers/python/tests/systems/18protein.parm7 to /<>/obj-x86_64-linux-gnu/python/tests/systems/18protein.parm7 cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/18protein.parm7 /<>/obj-x86_64-linux-gnu/python/tests/systems/18protein.parm7 [ 23%] CMake-copying file /<>/wrappers/python/tests/systems/18protein.rst7 to /<>/obj-x86_64-linux-gnu/python/tests/systems/18protein.rst7 cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/18protein.rst7 /<>/obj-x86_64-linux-gnu/python/tests/systems/18protein.rst7 [ 23%] CMake-copying file /<>/wrappers/python/tests/systems/1T2Y.pdb to /<>/obj-x86_64-linux-gnu/python/tests/systems/1T2Y.pdb cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/1T2Y.pdb /<>/obj-x86_64-linux-gnu/python/tests/systems/1T2Y.pdb [ 23%] CMake-copying file /<>/wrappers/python/tests/systems/2ci2.pdb.gro to /<>/obj-x86_64-linux-gnu/python/tests/systems/2ci2.pdb.gro cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/2ci2.pdb.gro /<>/obj-x86_64-linux-gnu/python/tests/systems/2ci2.pdb.gro [ 23%] CMake-copying file /<>/wrappers/python/tests/systems/2ci2.pdb.top to /<>/obj-x86_64-linux-gnu/python/tests/systems/2ci2.pdb.top cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different 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copy_if_different /<>/wrappers/python/tests/systems/5dhfr_cube.psf /<>/obj-x86_64-linux-gnu/python/tests/systems/5dhfr_cube.psf [ 23%] CMake-copying file /<>/wrappers/python/tests/systems/DNA_mbondi3.inpcrd to /<>/obj-x86_64-linux-gnu/python/tests/systems/DNA_mbondi3.inpcrd cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/DNA_mbondi3.inpcrd /<>/obj-x86_64-linux-gnu/python/tests/systems/DNA_mbondi3.inpcrd [ 23%] CMake-copying file /<>/wrappers/python/tests/systems/DNA_mbondi3.prmtop to /<>/obj-x86_64-linux-gnu/python/tests/systems/DNA_mbondi3.prmtop cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/DNA_mbondi3.prmtop /<>/obj-x86_64-linux-gnu/python/tests/systems/DNA_mbondi3.prmtop [ 23%] CMake-copying file /<>/wrappers/python/tests/systems/Mg_water.inpcrd to /<>/obj-x86_64-linux-gnu/python/tests/systems/Mg_water.inpcrd cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/Mg_water.inpcrd /<>/obj-x86_64-linux-gnu/python/tests/systems/Mg_water.inpcrd [ 23%] CMake-copying file /<>/wrappers/python/tests/systems/Mg_water.prmtop to /<>/obj-x86_64-linux-gnu/python/tests/systems/Mg_water.prmtop cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/Mg_water.prmtop /<>/obj-x86_64-linux-gnu/python/tests/systems/Mg_water.prmtop [ 23%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomCVForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomCVForce.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomCVForce.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomCVForce.cpp.o -c /<>/openmmapi/src/CustomCVForce.cpp [ 23%] CMake-copying file /<>/wrappers/python/tests/systems/MoS2.pdb to /<>/obj-x86_64-linux-gnu/python/tests/systems/MoS2.pdb cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/MoS2.pdb /<>/obj-x86_64-linux-gnu/python/tests/systems/MoS2.pdb [ 25%] CMake-copying file /<>/wrappers/python/tests/systems/MoS2.prm to /<>/obj-x86_64-linux-gnu/python/tests/systems/MoS2.prm cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/MoS2.prm /<>/obj-x86_64-linux-gnu/python/tests/systems/MoS2.prm [ 25%] CMake-copying file /<>/wrappers/python/tests/systems/MoS2.psf to /<>/obj-x86_64-linux-gnu/python/tests/systems/MoS2.psf cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/MoS2.psf /<>/obj-x86_64-linux-gnu/python/tests/systems/MoS2.psf [ 25%] CMake-copying file /<>/wrappers/python/tests/systems/T4-lysozyme-L99A-p-xylene-implicit.pdb to /<>/obj-x86_64-linux-gnu/python/tests/systems/T4-lysozyme-L99A-p-xylene-implicit.pdb cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/T4-lysozyme-L99A-p-xylene-implicit.pdb /<>/obj-x86_64-linux-gnu/python/tests/systems/T4-lysozyme-L99A-p-xylene-implicit.pdb [ 25%] CMake-copying file /<>/wrappers/python/tests/systems/aidilnaaaaa.gro to /<>/obj-x86_64-linux-gnu/python/tests/systems/aidilnaaaaa.gro cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/aidilnaaaaa.gro /<>/obj-x86_64-linux-gnu/python/tests/systems/aidilnaaaaa.gro [ 25%] CMake-copying file /<>/wrappers/python/tests/systems/aidilnaaaaa.top to /<>/obj-x86_64-linux-gnu/python/tests/systems/aidilnaaaaa.top cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/aidilnaaaaa.top /<>/obj-x86_64-linux-gnu/python/tests/systems/aidilnaaaaa.top [ 25%] CMake-copying file /<>/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/GBn2_NoCutoff.xml to /<>/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/GBn2_NoCutoff.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/GBn2_NoCutoff.xml /<>/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/GBn2_NoCutoff.xml [ 25%] CMake-copying file /<>/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/GBn_NoCutoff_Salt.xml to /<>/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/GBn_NoCutoff_Salt.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/GBn_NoCutoff_Salt.xml /<>/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/GBn_NoCutoff_Salt.xml [ 25%] CMake-copying file /<>/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/HCT_NoCutoff.xml to /<>/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/HCT_NoCutoff.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/HCT_NoCutoff.xml /<>/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/HCT_NoCutoff.xml [ 25%] CMake-copying file /<>/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/OBC1_NonPeriodic.xml to /<>/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/OBC1_NonPeriodic.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/OBC1_NonPeriodic.xml /<>/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/OBC1_NonPeriodic.xml [ 25%] CMake-copying file /<>/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/OBC2_NonPeriodic_Salt.xml to /<>/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/OBC2_NonPeriodic_Salt.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/ala-ala-ala-implicit-forces/OBC2_NonPeriodic_Salt.xml /<>/obj-x86_64-linux-gnu/python/tests/systems/ala-ala-ala-implicit-forces/OBC2_NonPeriodic_Salt.xml [ 25%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomCVForceImpl.cpp.o [ 25%] CMake-copying file /<>/wrappers/python/tests/systems/ala3_solv.crd to /<>/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv.crd /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomCVForceImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomCVForceImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomCVForceImpl.cpp.o -c /<>/openmmapi/src/CustomCVForceImpl.cpp cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/ala3_solv.crd /<>/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv.crd [ 25%] CMake-copying file /<>/wrappers/python/tests/systems/ala3_solv.parm7 to /<>/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv.parm7 cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/ala3_solv.parm7 /<>/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv.parm7 [ 25%] CMake-copying file /<>/wrappers/python/tests/systems/ala3_solv.psf to /<>/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv.psf cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/ala3_solv.psf /<>/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv.psf [ 25%] CMake-copying file /<>/wrappers/python/tests/systems/ala3_solv_drude.crd to /<>/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv_drude.crd cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/ala3_solv_drude.crd /<>/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv_drude.crd [ 25%] CMake-copying file /<>/wrappers/python/tests/systems/ala3_solv_drude.psf to /<>/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv_drude.psf cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/ala3_solv_drude.psf /<>/obj-x86_64-linux-gnu/python/tests/systems/ala3_solv_drude.psf [ 25%] CMake-copying file /<>/wrappers/python/tests/systems/ala_ala_ala.crd to /<>/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.crd cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/ala_ala_ala.crd /<>/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.crd [ 25%] CMake-copying file /<>/wrappers/python/tests/systems/ala_ala_ala.pdb to /<>/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.pdb cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/ala_ala_ala.pdb /<>/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.pdb [ 27%] CMake-copying file /<>/wrappers/python/tests/systems/ala_ala_ala.psf to /<>/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.psf cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/ala_ala_ala.psf /<>/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.psf [ 27%] CMake-copying file /<>/wrappers/python/tests/systems/ala_ala_ala.vpsf to /<>/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.vpsf cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/ala_ala_ala.vpsf /<>/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.vpsf [ 27%] CMake-copying file /<>/wrappers/python/tests/systems/ala_ala_ala.xpsf to /<>/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.xpsf cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/ala_ala_ala.xpsf /<>/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala.xpsf [ 27%] CMake-copying file /<>/wrappers/python/tests/systems/ala_ala_ala_drude.pdb to /<>/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala_drude.pdb cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/ala_ala_ala_drude.pdb /<>/obj-x86_64-linux-gnu/python/tests/systems/ala_ala_ala_drude.pdb [ 27%] CMake-copying file /<>/wrappers/python/tests/systems/alanine-dipeptide-amoeba-forces.xml to /<>/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-amoeba-forces.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/alanine-dipeptide-amoeba-forces.xml /<>/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-amoeba-forces.xml [ 27%] CMake-copying file /<>/wrappers/python/tests/systems/alanine-dipeptide-explicit-amber99SBILDN-tip3p.dms to /<>/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-explicit-amber99SBILDN-tip3p.dms cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/alanine-dipeptide-explicit-amber99SBILDN-tip3p.dms /<>/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-explicit-amber99SBILDN-tip3p.dms [ 27%] CMake-copying file /<>/wrappers/python/tests/systems/alanine-dipeptide-explicit.inpcrd to /<>/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-explicit.inpcrd cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/alanine-dipeptide-explicit.inpcrd /<>/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-explicit.inpcrd [ 27%] CMake-copying file 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/<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/GBn2_NoCutoff.xml /<>/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/GBn2_NoCutoff.xml [ 27%] CMake-copying file /<>/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/GBn_NoCutoff_Salt.xml to /<>/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/GBn_NoCutoff_Salt.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/GBn_NoCutoff_Salt.xml /<>/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/GBn_NoCutoff_Salt.xml [ 27%] CMake-copying file /<>/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/HCT_NoCutoff.xml to /<>/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/HCT_NoCutoff.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/HCT_NoCutoff.xml /<>/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/HCT_NoCutoff.xml [ 27%] CMake-copying file /<>/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/OBC1_NonPeriodic.xml to /<>/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/OBC1_NonPeriodic.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/OBC1_NonPeriodic.xml /<>/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/OBC1_NonPeriodic.xml [ 27%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomCentroidBondForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomCentroidBondForce.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomCentroidBondForce.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomCentroidBondForce.cpp.o -c /<>/openmmapi/src/CustomCentroidBondForce.cpp [ 27%] CMake-copying file /<>/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/OBC2_NonPeriodic_Salt.xml to /<>/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/OBC2_NonPeriodic_Salt.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/alanine-dipeptide-implicit-forces/OBC2_NonPeriodic_Salt.xml /<>/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit-forces/OBC2_NonPeriodic_Salt.xml [ 27%] CMake-copying file /<>/wrappers/python/tests/systems/alanine-dipeptide-implicit.inpcrd to /<>/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit.inpcrd cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/alanine-dipeptide-implicit.inpcrd /<>/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit.inpcrd [ 27%] CMake-copying file /<>/wrappers/python/tests/systems/alanine-dipeptide-implicit.pdb to /<>/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit.pdb cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/alanine-dipeptide-implicit.pdb /<>/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit.pdb [ 27%] CMake-copying file /<>/wrappers/python/tests/systems/alanine-dipeptide-implicit.prmtop to /<>/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit.prmtop cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/alanine-dipeptide-implicit.prmtop /<>/obj-x86_64-linux-gnu/python/tests/systems/alanine-dipeptide-implicit.prmtop [ 29%] CMake-copying file /<>/wrappers/python/tests/systems/altlocs.pdb to /<>/obj-x86_64-linux-gnu/python/tests/systems/altlocs.pdb cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/altlocs.pdb /<>/obj-x86_64-linux-gnu/python/tests/systems/altlocs.pdb [ 29%] CMake-copying file /<>/wrappers/python/tests/systems/amber.ncrst to /<>/obj-x86_64-linux-gnu/python/tests/systems/amber.ncrst cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/amber.ncrst /<>/obj-x86_64-linux-gnu/python/tests/systems/amber.ncrst [ 29%] CMake-copying file /<>/wrappers/python/tests/systems/amoeba-ion-in-water.pdb to /<>/obj-x86_64-linux-gnu/python/tests/systems/amoeba-ion-in-water.pdb cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/amoeba-ion-in-water.pdb /<>/obj-x86_64-linux-gnu/python/tests/systems/amoeba-ion-in-water.pdb [ 29%] CMake-copying file /<>/wrappers/python/tests/systems/bcd-nabumetone_lig.dms to /<>/obj-x86_64-linux-gnu/python/tests/systems/bcd-nabumetone_lig.dms cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/bcd-nabumetone_lig.dms /<>/obj-x86_64-linux-gnu/python/tests/systems/bcd-nabumetone_lig.dms [ 29%] CMake-copying file /<>/wrappers/python/tests/systems/bcd-nabumetone_rcpt.dms to /<>/obj-x86_64-linux-gnu/python/tests/systems/bcd-nabumetone_rcpt.dms cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/bcd-nabumetone_rcpt.dms /<>/obj-x86_64-linux-gnu/python/tests/systems/bcd-nabumetone_rcpt.dms [ 29%] CMake-copying file /<>/wrappers/python/tests/systems/bnz.gro to /<>/obj-x86_64-linux-gnu/python/tests/systems/bnz.gro cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/bnz.gro 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/<>/obj-x86_64-linux-gnu/python/tests/systems/charmm-solvated/envi.str [ 29%] CMake-copying file /<>/wrappers/python/tests/systems/charmm-solvated/isa_wat.3_kcl.m14.psf to /<>/obj-x86_64-linux-gnu/python/tests/systems/charmm-solvated/isa_wat.3_kcl.m14.psf cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/charmm-solvated/isa_wat.3_kcl.m14.psf /<>/obj-x86_64-linux-gnu/python/tests/systems/charmm-solvated/isa_wat.3_kcl.m14.psf [ 29%] CMake-copying file /<>/wrappers/python/tests/systems/charmm-solvated/m14.prm to /<>/obj-x86_64-linux-gnu/python/tests/systems/charmm-solvated/m14.prm cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/charmm-solvated/m14.prm /<>/obj-x86_64-linux-gnu/python/tests/systems/charmm-solvated/m14.prm [ 29%] CMake-copying file /<>/wrappers/python/tests/systems/charmm-solvated/m14.rtf to /<>/obj-x86_64-linux-gnu/python/tests/systems/charmm-solvated/m14.rtf cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/charmm-solvated/m14.rtf /<>/obj-x86_64-linux-gnu/python/tests/systems/charmm-solvated/m14.rtf [ 29%] CMake-copying file /<>/wrappers/python/tests/systems/charmm22.par to /<>/obj-x86_64-linux-gnu/python/tests/systems/charmm22.par cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/charmm22.par /<>/obj-x86_64-linux-gnu/python/tests/systems/charmm22.par [ 29%] CMake-copying file /<>/wrappers/python/tests/systems/charmm22.rtf to /<>/obj-x86_64-linux-gnu/python/tests/systems/charmm22.rtf cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/charmm22.rtf /<>/obj-x86_64-linux-gnu/python/tests/systems/charmm22.rtf [ 29%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomCentroidBondForceImpl.cpp.o [ 29%] CMake-copying file /<>/wrappers/python/tests/systems/chlb_cgenff.crd to /<>/obj-x86_64-linux-gnu/python/tests/systems/chlb_cgenff.crd /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomCentroidBondForceImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomCentroidBondForceImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomCentroidBondForceImpl.cpp.o -c /<>/openmmapi/src/CustomCentroidBondForceImpl.cpp cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/chlb_cgenff.crd /<>/obj-x86_64-linux-gnu/python/tests/systems/chlb_cgenff.crd [ 29%] CMake-copying file /<>/wrappers/python/tests/systems/chlb_cgenff.psf to /<>/obj-x86_64-linux-gnu/python/tests/systems/chlb_cgenff.psf cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/chlb_cgenff.psf /<>/obj-x86_64-linux-gnu/python/tests/systems/chlb_cgenff.psf [ 29%] CMake-copying file /<>/wrappers/python/tests/systems/crds_box.rst7 to /<>/obj-x86_64-linux-gnu/python/tests/systems/crds_box.rst7 cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/crds_box.rst7 /<>/obj-x86_64-linux-gnu/python/tests/systems/crds_box.rst7 [ 31%] CMake-copying file /<>/wrappers/python/tests/systems/crds_vels.rst7 to /<>/obj-x86_64-linux-gnu/python/tests/systems/crds_vels.rst7 cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/crds_vels.rst7 /<>/obj-x86_64-linux-gnu/python/tests/systems/crds_vels.rst7 [ 31%] CMake-copying file /<>/wrappers/python/tests/systems/crds_vels_box.rst7 to /<>/obj-x86_64-linux-gnu/python/tests/systems/crds_vels_box.rst7 cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different 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copy_if_different /<>/wrappers/python/tests/systems/cyt-gua-cyt.psf /<>/obj-x86_64-linux-gnu/python/tests/systems/cyt-gua-cyt.psf [ 31%] CMake-copying file /<>/wrappers/python/tests/systems/explicit.top to /<>/obj-x86_64-linux-gnu/python/tests/systems/explicit.top cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/explicit.top /<>/obj-x86_64-linux-gnu/python/tests/systems/explicit.top [ 31%] CMake-copying file /<>/wrappers/python/tests/systems/ff14ipq.parm7 to /<>/obj-x86_64-linux-gnu/python/tests/systems/ff14ipq.parm7 cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/ff14ipq.parm7 /<>/obj-x86_64-linux-gnu/python/tests/systems/ff14ipq.parm7 [ 31%] CMake-copying file /<>/wrappers/python/tests/systems/ff14ipq.rst7 to /<>/obj-x86_64-linux-gnu/python/tests/systems/ff14ipq.rst7 cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different 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-E copy_if_different /<>/wrappers/python/tests/systems/gaffwat.parm7 /<>/obj-x86_64-linux-gnu/python/tests/systems/gaffwat.parm7 [ 31%] CMake-copying file /<>/wrappers/python/tests/systems/gpcr.cif to /<>/obj-x86_64-linux-gnu/python/tests/systems/gpcr.cif cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/gpcr.cif /<>/obj-x86_64-linux-gnu/python/tests/systems/gpcr.cif [ 31%] CMake-copying file /<>/wrappers/python/tests/systems/implicit.top to /<>/obj-x86_64-linux-gnu/python/tests/systems/implicit.top cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/implicit.top /<>/obj-x86_64-linux-gnu/python/tests/systems/implicit.top [ 31%] CMake-copying file /<>/wrappers/python/tests/systems/improper.psf to /<>/obj-x86_64-linux-gnu/python/tests/systems/improper.psf cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/improper.psf /<>/obj-x86_64-linux-gnu/python/tests/systems/improper.psf [ 31%] CMake-copying file /<>/wrappers/python/tests/systems/impropers_ordering_tetrapeptide.pdb to /<>/obj-x86_64-linux-gnu/python/tests/systems/impropers_ordering_tetrapeptide.pdb cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/impropers_ordering_tetrapeptide.pdb /<>/obj-x86_64-linux-gnu/python/tests/systems/impropers_ordering_tetrapeptide.pdb [ 31%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomCompoundBondForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomCompoundBondForce.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomCompoundBondForce.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomCompoundBondForce.cpp.o -c /<>/openmmapi/src/CustomCompoundBondForce.cpp [ 31%] CMake-copying file /<>/wrappers/python/tests/systems/insertions.pdbx to /<>/obj-x86_64-linux-gnu/python/tests/systems/insertions.pdbx cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/insertions.pdbx /<>/obj-x86_64-linux-gnu/python/tests/systems/insertions.pdbx [ 31%] CMake-copying file /<>/wrappers/python/tests/systems/ionic.gro to /<>/obj-x86_64-linux-gnu/python/tests/systems/ionic.gro cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/ionic.gro /<>/obj-x86_64-linux-gnu/python/tests/systems/ionic.gro [ 34%] CMake-copying file /<>/wrappers/python/tests/systems/ionic.top to /<>/obj-x86_64-linux-gnu/python/tests/systems/ionic.top cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/ionic.top /<>/obj-x86_64-linux-gnu/python/tests/systems/ionic.top [ 34%] CMake-copying file /<>/wrappers/python/tests/systems/ions.pdb to /<>/obj-x86_64-linux-gnu/python/tests/systems/ions.pdb cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/ions.pdb /<>/obj-x86_64-linux-gnu/python/tests/systems/ions.pdb [ 34%] CMake-copying file /<>/wrappers/python/tests/systems/ions.psf to /<>/obj-x86_64-linux-gnu/python/tests/systems/ions.psf cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/ions.psf /<>/obj-x86_64-linux-gnu/python/tests/systems/ions.psf [ 34%] CMake-copying file /<>/wrappers/python/tests/systems/lysozyme-implicit-forces.xml to /<>/obj-x86_64-linux-gnu/python/tests/systems/lysozyme-implicit-forces.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/lysozyme-implicit-forces.xml /<>/obj-x86_64-linux-gnu/python/tests/systems/lysozyme-implicit-forces.xml [ 34%] CMake-copying file 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/<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/par_all36_cgenff.prm /<>/obj-x86_64-linux-gnu/python/tests/systems/par_all36_cgenff.prm [ 34%] CMake-copying file /<>/wrappers/python/tests/systems/par_all36_prot.prm to /<>/obj-x86_64-linux-gnu/python/tests/systems/par_all36_prot.prm cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/par_all36_prot.prm /<>/obj-x86_64-linux-gnu/python/tests/systems/par_all36_prot.prm [ 34%] CMake-copying file /<>/wrappers/python/tests/systems/test_amber_ff.xml to /<>/obj-x86_64-linux-gnu/python/tests/systems/test_amber_ff.xml cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/test_amber_ff.xml /<>/obj-x86_64-linux-gnu/python/tests/systems/test_amber_ff.xml [ 34%] CMake-copying file /<>/wrappers/python/tests/systems/tip5p.pdb to /<>/obj-x86_64-linux-gnu/python/tests/systems/tip5p.pdb cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/tip5p.pdb /<>/obj-x86_64-linux-gnu/python/tests/systems/tip5p.pdb [ 36%] CMake-copying file /<>/wrappers/python/tests/systems/top_all36_cgenff.rtf to /<>/obj-x86_64-linux-gnu/python/tests/systems/top_all36_cgenff.rtf cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/top_all36_cgenff.rtf /<>/obj-x86_64-linux-gnu/python/tests/systems/top_all36_cgenff.rtf [ 36%] CMake-copying file /<>/wrappers/python/tests/systems/toppar_drude_master_protein_2013e.str to /<>/obj-x86_64-linux-gnu/python/tests/systems/toppar_drude_master_protein_2013e.str cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/toppar_drude_master_protein_2013e.str 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/<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/triclinic.gro /<>/obj-x86_64-linux-gnu/python/tests/systems/triclinic.gro [ 36%] CMake-copying file /<>/wrappers/python/tests/systems/triclinic.pdb to /<>/obj-x86_64-linux-gnu/python/tests/systems/triclinic.pdb cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/triclinic.pdb /<>/obj-x86_64-linux-gnu/python/tests/systems/triclinic.pdb [ 36%] CMake-copying file /<>/wrappers/python/tests/systems/triclinic.pdbx to /<>/obj-x86_64-linux-gnu/python/tests/systems/triclinic.pdbx cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/triclinic.pdbx /<>/obj-x86_64-linux-gnu/python/tests/systems/triclinic.pdbx [ 36%] CMake-copying file /<>/wrappers/python/tests/systems/tz2.truncoct.parm7 to /<>/obj-x86_64-linux-gnu/python/tests/systems/tz2.truncoct.parm7 cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/tz2.truncoct.parm7 /<>/obj-x86_64-linux-gnu/python/tests/systems/tz2.truncoct.parm7 [ 36%] CMake-copying file /<>/wrappers/python/tests/systems/tz2.truncoct.rst7 to /<>/obj-x86_64-linux-gnu/python/tests/systems/tz2.truncoct.rst7 cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/tz2.truncoct.rst7 /<>/obj-x86_64-linux-gnu/python/tests/systems/tz2.truncoct.rst7 [ 36%] CMake-copying file /<>/wrappers/python/tests/systems/water-box-216.prmtop to /<>/obj-x86_64-linux-gnu/python/tests/systems/water-box-216.prmtop cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/water-box-216.prmtop /<>/obj-x86_64-linux-gnu/python/tests/systems/water-box-216.prmtop [ 36%] CMake-copying file /<>/wrappers/python/tests/systems/water_methanol.prm to /<>/obj-x86_64-linux-gnu/python/tests/systems/water_methanol.prm cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/water_methanol.prm /<>/obj-x86_64-linux-gnu/python/tests/systems/water_methanol.prm [ 36%] CMake-copying file /<>/wrappers/python/tests/systems/water_methanol.psf to /<>/obj-x86_64-linux-gnu/python/tests/systems/water_methanol.psf cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/systems/water_methanol.psf /<>/obj-x86_64-linux-gnu/python/tests/systems/water_methanol.psf [ 36%] CMake-copying file /<>/wrappers/python/tests/validateConstraints.py to /<>/obj-x86_64-linux-gnu/python/tests/validateConstraints.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/validateConstraints.py /<>/obj-x86_64-linux-gnu/python/tests/validateConstraints.py [ 36%] CMake-copying file /<>/wrappers/python/tests/validateModeller.py to /<>/obj-x86_64-linux-gnu/python/tests/validateModeller.py cd /<>/obj-x86_64-linux-gnu/wrappers/python && /usr/bin/cmake -E copy_if_different /<>/wrappers/python/tests/validateModeller.py /<>/obj-x86_64-linux-gnu/python/tests/validateModeller.py [ 36%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomCompoundBondForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomCompoundBondForceImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomCompoundBondForceImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomCompoundBondForceImpl.cpp.o -c /<>/openmmapi/src/CustomCompoundBondForceImpl.cpp [ 36%] Creating OpenMM Python swig input files... cd /<>/obj-x86_64-linux-gnu/python/src/swig_doxygen && /usr/bin/python3.9 /<>/obj-x86_64-linux-gnu/python/src/swig_doxygen/swigInputBuilder.py -i /<>/obj-x86_64-linux-gnu/wrappers/python/src/swig_doxygen/doxygen/xml -c swigInputConfig.py -d OpenMM_docstring.i -o OpenMMSwigHeaders.i -a swig_lib/python/pythonprepend.i -z swig_lib/python/pythonappend.i -v 4.0.2 Integrator.getStepSize() returns unit.picosecond LangevinMiddleIntegrator.getTemperature() returns unit.kelvin LangevinMiddleIntegrator.getFriction() returns unit.picosecond**-1 AndersenThermostat.getDefaultTemperature() returns unit.kelvin AndersenThermostat.getDefaultCollisionFrequency() returns unit.picosecond**-1 AmoebaMultipoleForce.getCutoffDistance() returns unit.nanometer AmoebaMultipoleForce.getAEwald() returns 1/unit.nanometer AmoebaMultipoleForce.getMultipoleParameters() returns charge as unit.elementary_charge AmoebaMultipoleForce.getMultipoleParameters() returns molecularDipole as unit.elementary_charge*unit.nanometer AmoebaMultipoleForce.getMultipoleParameters() returns molecularQuadrupole as unit.elementary_charge*unit.nanometer**2 AmoebaMultipoleForce.getMultipoleParameters() returns axisType as None AmoebaMultipoleForce.getMultipoleParameters() returns multipoleAtomZ as None AmoebaMultipoleForce.getMultipoleParameters() returns multipoleAtomX as None AmoebaMultipoleForce.getMultipoleParameters() returns multipoleAtomY as None AmoebaMultipoleForce.getMultipoleParameters() returns thole as None AmoebaMultipoleForce.getMultipoleParameters() returns dampingFactor as None AmoebaMultipoleForce.getMultipoleParameters() returns polarity as unit.nanometer**3 MonteCarloBarostat.getDefaultPressure() returns unit.bar MonteCarloBarostat.getDefaultTemperature() returns unit.kelvin BrownianIntegrator.getTemperature() returns unit.kelvin BrownianIntegrator.getFriction() returns unit.picosecond**-1 RMSDForce.getReferencePositions() returns unit.nanometer VariableLangevinIntegrator.getTemperature() returns unit.kelvin VariableLangevinIntegrator.getFriction() returns unit.picosecond**-1 VariableLangevinIntegrator.getMaximumStepSize() returns unit.picosecond LocalCoordinatesSite.getLocalPosition() returns unit.nanometer CustomGBForce.getCutoffDistance() returns unit.nanometers HippoNonbondedForce.getCutoffDistance() returns unit.nanometers HippoNonbondedForce.getSwitchingDistance() returns unit.nanometers HippoNonbondedForce.getParticleParameters() returns charge as unit.elementary_charge HippoNonbondedForce.getParticleParameters() returns dipole as unit.elementary_charge*unit.nanometer HippoNonbondedForce.getParticleParameters() returns quadrupole as unit.elementary_charge*unit.nanometer**2 HippoNonbondedForce.getParticleParameters() returns coreCharge as unit.elementary_charge HippoNonbondedForce.getParticleParameters() returns alpha as None HippoNonbondedForce.getParticleParameters() returns epsilon as None HippoNonbondedForce.getParticleParameters() returns damping as None HippoNonbondedForce.getParticleParameters() returns c6 as None HippoNonbondedForce.getParticleParameters() returns pauliK as None HippoNonbondedForce.getParticleParameters() returns pauliQ as None HippoNonbondedForce.getParticleParameters() returns pauliAlpha as None HippoNonbondedForce.getParticleParameters() returns polarizability as None HippoNonbondedForce.getParticleParameters() returns axisType as None HippoNonbondedForce.getParticleParameters() returns multipoleAtomZ as None HippoNonbondedForce.getParticleParameters() returns multipoleAtomX as None HippoNonbondedForce.getParticleParameters() returns multipoleAtomY as None CustomNonbondedForce.getCutoffDistance() returns unit.nanometers CustomNonbondedForce.getSwitchingDistance() returns unit.nanometers MonteCarloAnisotropicBarostat.getDefaultPressure() returns unit.bar MonteCarloAnisotropicBarostat.getDefaultTemperature() returns unit.kelvin GayBerneForce.getCutoffDistance() returns unit.nanometers GayBerneForce.getSwitchingDistance() returns unit.nanometers GayBerneForce.getParticleParameters() returns sigma as unit.nanometer GayBerneForce.getParticleParameters() returns epsilon as unit.kilojoule_per_mole GayBerneForce.getParticleParameters() returns xparticle as None GayBerneForce.getParticleParameters() returns yparticle as None GayBerneForce.getParticleParameters() returns sx as unit.nanometer GayBerneForce.getParticleParameters() returns sy as unit.nanometer GayBerneForce.getParticleParameters() returns sz as unit.nanometer GayBerneForce.getParticleParameters() returns ex as None GayBerneForce.getParticleParameters() returns ey as None GayBerneForce.getParticleParameters() returns ez as None CustomHbondForce.getCutoffDistance() returns unit.nanometers RBTorsionForce.getTorsionParameters() returns particle1 as None RBTorsionForce.getTorsionParameters() returns particle2 as None RBTorsionForce.getTorsionParameters() returns particle3 as None RBTorsionForce.getTorsionParameters() returns particle4 as None RBTorsionForce.getTorsionParameters() returns c0 as unit.kilojoules_per_mole RBTorsionForce.getTorsionParameters() returns c1 as unit.kilojoules_per_mole RBTorsionForce.getTorsionParameters() returns c2 as unit.kilojoules_per_mole RBTorsionForce.getTorsionParameters() returns c3 as unit.kilojoules_per_mole RBTorsionForce.getTorsionParameters() returns c4 as unit.kilojoules_per_mole RBTorsionForce.getTorsionParameters() returns c5 as unit.kilojoules_per_mole NonbondedForce.getCutoffDistance() returns unit.nanometers NonbondedForce.getSwitchingDistance() returns unit.nanometers NonbondedForce.getPMEParameters() returns alpha as unit.nanometer**-1 NonbondedForce.getPMEParameters() returns nx as None NonbondedForce.getPMEParameters() returns ny as None NonbondedForce.getPMEParameters() returns nz as None NonbondedForce.getParticleParameters() returns charge as unit.elementary_charge NonbondedForce.getParticleParameters() returns sigma as unit.nanometer NonbondedForce.getParticleParameters() returns epsilon as unit.kilojoule_per_mole NonbondedForce.getExceptionParameters() returns particle1 as None NonbondedForce.getExceptionParameters() returns particle2 as None NonbondedForce.getExceptionParameters() returns chargeProd as unit.elementary_charge*unit.elementary_charge NonbondedForce.getExceptionParameters() returns sigma as unit.nanometer NonbondedForce.getExceptionParameters() returns epsilon as unit.kilojoule_per_mole NoseHooverChain.getTemperature() returns unit.kelvin NoseHooverChain.getRelativeTemperature() returns unit.kelvin NoseHooverChain.getCollisionFrequency() returns unit.picosecond**-1 NoseHooverChain.getRelativeCollisionFrequency() returns unit.picosecond**-1 CMAPTorsionForce.getMapParameters() returns size as None CMAPTorsionForce.getMapParameters() returns energy as unit.kilojoule_per_mole CompoundIntegrator.getStepSize() returns unit.picosecond NoseHooverIntegrator.getTemperature() returns unit.kelvin NoseHooverIntegrator.getRelativeTemperature() returns unit.kelvin NoseHooverIntegrator.getCollisionFrequency() returns unit.picosecond**-1 NoseHooverIntegrator.getRelativeCollisionFrequency() returns unit.picosecond**-1 NoseHooverIntegrator.computeHeatBathEnergy() returns unit.kilojoules_per_mole NoseHooverIntegrator.getMaximumPairDistance() returns unit.nanometer AmoebaGeneralizedKirkwoodForce.getParticleParameters() returns charge as unit.elementary_charge AmoebaGeneralizedKirkwoodForce.getParticleParameters() returns radius as unit.nanometer AmoebaGeneralizedKirkwoodForce.getParticleParameters() returns scalingFactor as None AmoebaGeneralizedKirkwoodForce.getProbeRadius() returns unit.nanometer AmoebaGeneralizedKirkwoodForce.getSurfaceAreaFactor() returns unit.kilojoule_per_mole/(unit.nanometer*unit.nanometer) HarmonicAngleForce.getAngleParameters() returns particle1 as None HarmonicAngleForce.getAngleParameters() returns particle2 as None HarmonicAngleForce.getAngleParameters() returns particle3 as None HarmonicAngleForce.getAngleParameters() returns angle as unit.radian HarmonicAngleForce.getAngleParameters() returns k as unit.kilojoule_per_mole/(unit.radian*unit.radian) LangevinIntegrator.getTemperature() returns unit.kelvin LangevinIntegrator.getFriction() returns unit.picosecond**-1 AmoebaWcaDispersionForce.getParticleParameters() returns radius as unit.nanometer AmoebaWcaDispersionForce.getParticleParameters() returns epsilon as unit.kilojoule_per_mole AmoebaWcaDispersionForce.getEpso() returns unit.kilojoule_per_mole AmoebaWcaDispersionForce.getEpsh() returns unit.kilojoule_per_mole AmoebaWcaDispersionForce.getRmino() returns unit.nanometer AmoebaWcaDispersionForce.getRminh() returns unit.nanometer AmoebaWcaDispersionForce.getAwater() returns 1/(unit.nanometer*unit.nanometer*unit.nanometer) AmoebaWcaDispersionForce.getDispoff() returns unit.nanometer MonteCarloMembraneBarostat.getDefaultPressure() returns unit.bar MonteCarloMembraneBarostat.getDefaultSurfaceTension() returns unit.bar*unit.nanometer MonteCarloMembraneBarostat.getDefaultTemperature() returns unit.kelvin HarmonicBondForce.getBondParameters() returns particle1 as None HarmonicBondForce.getBondParameters() returns particle2 as None HarmonicBondForce.getBondParameters() returns length as unit.nanometer HarmonicBondForce.getBondParameters() returns k as unit.kilojoule_per_mole/(unit.nanometer*unit.nanometer) DrudeForce.getParticleParameters() returns particle as None DrudeForce.getParticleParameters() returns particle1 as None DrudeForce.getParticleParameters() returns particle2 as None DrudeForce.getParticleParameters() returns particle3 as None DrudeForce.getParticleParameters() returns particle4 as None DrudeForce.getParticleParameters() returns charge as unit.elementary_charge DrudeForce.getParticleParameters() returns polarizability as unit.nanometer**3 DrudeForce.getParticleParameters() returns aniso12 as None DrudeForce.getParticleParameters() returns aniso34 as None PeriodicTorsionForce.getTorsionParameters() returns particle1 as None PeriodicTorsionForce.getTorsionParameters() returns particle2 as None PeriodicTorsionForce.getTorsionParameters() returns particle3 as None PeriodicTorsionForce.getTorsionParameters() returns particle4 as None PeriodicTorsionForce.getTorsionParameters() returns periodicity as None PeriodicTorsionForce.getTorsionParameters() returns phase as unit.radian PeriodicTorsionForce.getTorsionParameters() returns k as unit.kilojoule_per_mole DrudeNoseHooverIntegrator.getMaxDrudeDistance() returns unit.nanometer DrudeNoseHooverIntegrator.getVelocitiesForTemperature() returns unit.nanometers / unit.picosecond VariableVerletIntegrator.getMaximumStepSize() returns unit.picosecond GBSAOBCForce.getParticleParameters() returns charge as unit.elementary_charge GBSAOBCForce.getParticleParameters() returns radius as unit.nanometer GBSAOBCForce.getParticleParameters() returns scalingFactor as None GBSAOBCForce.getSurfaceAreaEnergy() returns unit.kilojoule_per_mole/unit.nanometer/unit.nanometer GBSAOBCForce.getCutoffDistance() returns unit.nanometers RPMDIntegrator.getTemperature() returns unit.kelvin RPMDIntegrator.getFriction() returns unit.picosecond**-1 RPMDIntegrator.getTotalEnergy() returns unit.kilojoules_per_mole DrudeIntegrator.getDrudeTemperature() returns unit.kelvin DrudeIntegrator.getMaxDrudeDistance() returns unit.nanometer DrudeSCFIntegrator.getMinimizationErrorTolerance() returns unit.kilojoules_per_mole/unit.nanometer DrudeLangevinIntegrator.getTemperature() returns unit.kelvin DrudeLangevinIntegrator.getFriction() returns unit.picosecond**-1 DrudeLangevinIntegrator.getDrudeFriction() returns unit.picosecond**-1 State.getTime() returns unit.picosecond State.getKineticEnergy() returns unit.kilojoules_per_mole State.getPotentialEnergy() returns unit.kilojoules_per_mole State.getPeriodicBoxVectors() returns unit.nanometers State.getPeriodicBoxVolume() returns unit.nanometers**3 System.getParticleMass() returns unit.amu System.getConstraintParameters() returns particle1 as None System.getConstraintParameters() returns particle2 as None System.getConstraintParameters() returns distance as unit.nanometer System.getDefaultPeriodicBoxVectors() returns a as unit.nanometer System.getDefaultPeriodicBoxVectors() returns b as unit.nanometer System.getDefaultPeriodicBoxVectors() returns c as unit.nanometer RPMDMonteCarloBarostat.getDefaultPressure() returns unit.bar CustomManyParticleForce.getCutoffDistance() returns unit.nanometers AmoebaVdwForce.getParticleParameters() returns parentIndex as None AmoebaVdwForce.getParticleParameters() returns sigma as unit.nanometer AmoebaVdwForce.getParticleParameters() returns epsilon as unit.kilojoule_per_mole AmoebaVdwForce.getParticleParameters() returns reductionFactor as None AmoebaVdwForce.getParticleParameters() returns isAlchemical as None AmoebaVdwForce.getParticleParameters() returns typeIndex as None AmoebaVdwForce.getParticleTypeParameters() returns sigma as None AmoebaVdwForce.getParticleTypeParameters() returns epsilon as unit.nanometer AmoebaVdwForce.getTypePairParameters() returns type1 as None AmoebaVdwForce.getTypePairParameters() returns type2 as None AmoebaVdwForce.getTypePairParameters() returns sigma as None AmoebaVdwForce.getTypePairParameters() returns epsilon as unit.nanometer AmoebaVdwForce.getCutoffDistance() returns unit.nanometers AmoebaVdwForce.getCutoff() returns unit.nanometer [ 36%] Creating OpenMM Python module sources with swig... cd /<>/obj-x86_64-linux-gnu/python/src/swig_doxygen && /usr/bin/swig -python -c++ -outdir /<>/obj-x86_64-linux-gnu/python/openmm -o OpenMMSwig.cxx OpenMM.i [ 36%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomExternalForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomExternalForce.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomExternalForce.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomExternalForce.cpp.o -c /<>/openmmapi/src/CustomExternalForce.cpp OpenMMSwigHeaders.i:2616: Warning 314: 'None' is a python keyword, renaming to '_None' [ 36%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomExternalForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomExternalForceImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomExternalForceImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomExternalForceImpl.cpp.o -c /<>/openmmapi/src/CustomExternalForceImpl.cpp [ 36%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomGBForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomGBForce.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomGBForce.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomGBForce.cpp.o -c /<>/openmmapi/src/CustomGBForce.cpp [ 36%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomGBForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomGBForceImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomGBForceImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomGBForceImpl.cpp.o -c /<>/openmmapi/src/CustomGBForceImpl.cpp [ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomHbondForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomHbondForce.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomHbondForce.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomHbondForce.cpp.o -c /<>/openmmapi/src/CustomHbondForce.cpp [ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomHbondForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomHbondForceImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomHbondForceImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomHbondForceImpl.cpp.o -c /<>/openmmapi/src/CustomHbondForceImpl.cpp OpenMMSwigHeaders.i:503: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:630: Warning 453: Can't apply (std::vector< Vec3,std::allocator< Vec3 > > &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:633: Warning 453: Can't apply (std::vector< Vec3,std::allocator< Vec3 > > &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:636: Warning 453: Can't apply (std::vector< Vec3,std::allocator< Vec3 > > &OUTPUT). No typemaps are defined. [ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomIntegrator.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomIntegrator.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomIntegrator.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomIntegrator.cpp.o -c /<>/openmmapi/src/CustomIntegrator.cpp OpenMMSwigHeaders.i:642: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:647: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:696: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:701: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:704: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. [ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomIntegratorUtilities.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomIntegratorUtilities.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomIntegratorUtilities.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomIntegratorUtilities.cpp.o -c /<>/openmmapi/src/CustomIntegratorUtilities.cpp OpenMMSwigHeaders.i:760: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:775: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:928: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1055: Warning 453: Can't apply (std::vector< Vec3,std::allocator< Vec3 > > &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1058: Warning 453: Can't apply (std::vector< Vec3,std::allocator< Vec3 > > &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1061: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1151: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1203: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1286: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1372: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1407: Warning 453: Can't apply (std::vector< Vec3,std::allocator< Vec3 > > &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1410: Warning 453: Can't apply (std::vector< Vec3,std::allocator< Vec3 > > &OUTPUT). No typemaps are defined. ./swig_lib/python/extend.i:372: Warning 509: Overloaded method OpenMM::CustomIntegrator::getPerDofVariable(int) const effectively ignored, OpenMMSwigHeaders.i:1408: Warning 509: as it is shadowed by OpenMM::CustomIntegrator::getPerDofVariable(int,std::vector< Vec3,std::allocator< Vec3 > > &) const. OpenMMSwigHeaders.i:1470: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1605: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1708: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. [ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomManyParticleForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomManyParticleForce.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomManyParticleForce.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomManyParticleForce.cpp.o -c /<>/openmmapi/src/CustomManyParticleForce.cpp OpenMMSwigHeaders.i:1831: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1855: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1887: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1976: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:1992: Warning 453: Can't apply (OpenMM::SerializationNode &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2042: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2085: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2113: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. [ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomManyParticleForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomManyParticleForceImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomManyParticleForceImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomManyParticleForceImpl.cpp.o -c /<>/openmmapi/src/CustomManyParticleForceImpl.cpp OpenMMSwigHeaders.i:2144: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2155: Warning 453: Can't apply (ContextImpl &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2224: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2371: Warning 453: Can't apply (Vec3 &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2372: Warning 453: Can't apply (Vec3 &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2373: Warning 453: Can't apply (Vec3 &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2412: Warning 453: Can't apply (Vec3 &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2413: Warning 453: Can't apply (Vec3 &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2414: Warning 453: Can't apply (Vec3 &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2445: Warning 453: Can't apply (ContextImpl &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2446: Warning 453: Can't apply (ContextImpl &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2496: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. [ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomNonbondedForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomNonbondedForce.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomNonbondedForce.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomNonbondedForce.cpp.o -c /<>/openmmapi/src/CustomNonbondedForce.cpp OpenMMSwigHeaders.i:2592: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. OpenMMSwigHeaders.i:2686: Warning 453: Can't apply (OpenMM::Context &OUTPUT). No typemaps are defined. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 38%] Built target BuildModule [ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomNonbondedForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomNonbondedForceImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomNonbondedForceImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomNonbondedForceImpl.cpp.o -c /<>/openmmapi/src/CustomNonbondedForceImpl.cpp [ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomTorsionForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomTorsionForce.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomTorsionForce.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomTorsionForce.cpp.o -c /<>/openmmapi/src/CustomTorsionForce.cpp [ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/CustomTorsionForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/CustomTorsionForceImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/CustomTorsionForceImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/CustomTorsionForceImpl.cpp.o -c /<>/openmmapi/src/CustomTorsionForceImpl.cpp [ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/Force.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/Force.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/Force.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/Force.cpp.o -c /<>/openmmapi/src/Force.cpp [ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/ForceImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/ForceImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/ForceImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/ForceImpl.cpp.o -c /<>/openmmapi/src/ForceImpl.cpp [ 38%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/GBSAOBCForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/GBSAOBCForce.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/GBSAOBCForce.cpp.o.d -o 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicBondForceImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicBondForceImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/HarmonicBondForceImpl.cpp.o -c /<>/openmmapi/src/HarmonicBondForceImpl.cpp [ 40%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/Integrator.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include 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-D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/RBTorsionForceImpl.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/RBTorsionForceImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/RBTorsionForceImpl.cpp.o -c /<>/openmmapi/src/RBTorsionForceImpl.cpp [ 42%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/RMSDForce.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include 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/<>/openmmapi/src/System.cpp [ 42%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/TabulatedFunction.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT 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-I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/openmmapi/src/ThreadPool.cpp.o -MF CMakeFiles/OpenMM.dir/openmmapi/src/ThreadPool.cpp.o.d -o CMakeFiles/OpenMM.dir/openmmapi/src/ThreadPool.cpp.o -c /<>/openmmapi/src/ThreadPool.cpp [ 42%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/VariableLangevinIntegrator.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include 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CMakeFiles/OpenMM.dir/openmmapi/src/VerletIntegrator.cpp.o -c /<>/openmmapi/src/VerletIntegrator.cpp [ 42%] Building CXX object CMakeFiles/OpenMM.dir/openmmapi/src/VirtualSite.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security 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-I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/olla/src/Kernel.cpp.o -MF CMakeFiles/OpenMM.dir/olla/src/Kernel.cpp.o.d -o CMakeFiles/OpenMM.dir/olla/src/Kernel.cpp.o -c /<>/olla/src/Kernel.cpp [ 44%] Building CXX object CMakeFiles/OpenMM.dir/olla/src/KernelImpl.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/olla/src/KernelImpl.cpp.o -MF CMakeFiles/OpenMM.dir/olla/src/KernelImpl.cpp.o.d -o CMakeFiles/OpenMM.dir/olla/src/KernelImpl.cpp.o -c /<>/olla/src/KernelImpl.cpp [ 44%] Building CXX object CMakeFiles/OpenMM.dir/olla/src/Platform.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT 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-ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/libraries/quern/src/quern.cpp.o -MF CMakeFiles/OpenMM.dir/libraries/quern/src/quern.cpp.o.d -o CMakeFiles/OpenMM.dir/libraries/quern/src/quern.cpp.o -c /<>/libraries/quern/src/quern.cpp [ 44%] Building CXX object CMakeFiles/OpenMM.dir/libraries/quern/src/quern_factorization.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/libraries/lepton/src/ParsedExpression.cpp.o -MF CMakeFiles/OpenMM.dir/libraries/lepton/src/ParsedExpression.cpp.o.d -o CMakeFiles/OpenMM.dir/libraries/lepton/src/ParsedExpression.cpp.o -c /<>/libraries/lepton/src/ParsedExpression.cpp [ 44%] Building CXX object CMakeFiles/OpenMM.dir/libraries/lepton/src/Parser.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/libraries/lepton/src/Parser.cpp.o -MF CMakeFiles/OpenMM.dir/libraries/lepton/src/Parser.cpp.o.d -o CMakeFiles/OpenMM.dir/libraries/lepton/src/Parser.cpp.o -c /<>/libraries/lepton/src/Parser.cpp [ 44%] Building CXX object CMakeFiles/OpenMM.dir/libraries/sfmt/src/SFMT.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DHAVE_SSE2=1 -MD -MT CMakeFiles/OpenMM.dir/libraries/sfmt/src/SFMT.cpp.o -MF CMakeFiles/OpenMM.dir/libraries/sfmt/src/SFMT.cpp.o.d -o CMakeFiles/OpenMM.dir/libraries/sfmt/src/SFMT.cpp.o -c /<>/libraries/sfmt/src/SFMT.cpp /<>/libraries/lepton/src/ParsedExpression.cpp:49:19: warning: reference cannot be bound to dereferenced null pointer in well-defined C++ code; comparison may be assumed to always evaluate to false [-Wtautological-undefined-compare] if (&rootNode.getOperation() == NULL) ~~~~~~~~~^~~~~~~~~~~~~~ ~~~~ /<>/libraries/lepton/include/lepton/ExpressionTreeNode.h:96:22: note: 'getOperation' returns a reference const Operation& getOperation() const; ^ /<>/libraries/sfmt/src/SFMT.cpp:631:41: warning: 'memset' call operates on objects of type 'w128_t' (aka 'W128_T') while the size is based on a different type 'w128_t *' (aka 'W128_T *') [-Wsizeof-pointer-memaccess] memset(data.sfmt, 0x8b, sizeof(data.sfmt)); ~~~~~~~~~ ~~~~~^~~~ /<>/libraries/sfmt/src/SFMT.cpp:631:41: note: did you mean to dereference the argument to 'sizeof' (and multiply it by the number of elements)? memset(data.sfmt, 0x8b, sizeof(data.sfmt)); ~~~~~^~~~ 1 warning generated. [ 44%] Building CXX object CMakeFiles/OpenMM.dir/libraries/lbfgs/src/lbfgs.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/libraries/lbfgs/src/lbfgs.cpp.o -MF CMakeFiles/OpenMM.dir/libraries/lbfgs/src/lbfgs.cpp.o.d -o CMakeFiles/OpenMM.dir/libraries/lbfgs/src/lbfgs.cpp.o -c /<>/libraries/lbfgs/src/lbfgs.cpp /<>/libraries/lbfgs/src/lbfgs.cpp:494:25: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (ret = cd.proc_progress(cd.instance, x, g, fx, xnorm, gnorm, step, cd.n, k, ls)) { ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libraries/lbfgs/src/lbfgs.cpp:494:25: note: place parentheses around the assignment to silence this warning if (ret = cd.proc_progress(cd.instance, x, g, fx, xnorm, gnorm, step, cd.n, k, ls)) { ^ ( ) /<>/libraries/lbfgs/src/lbfgs.cpp:494:25: note: use '==' to turn this assignment into an equality comparison if (ret = cd.proc_progress(cd.instance, x, g, fx, xnorm, gnorm, step, cd.n, k, ls)) { ^ == [ 44%] Building CXX object CMakeFiles/OpenMM.dir/libraries/hilbert/src/hilbert.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/libraries/hilbert/src/hilbert.cpp.o -MF CMakeFiles/OpenMM.dir/libraries/hilbert/src/hilbert.cpp.o.d -o CMakeFiles/OpenMM.dir/libraries/hilbert/src/hilbert.cpp.o -c /<>/libraries/hilbert/src/hilbert.cpp [ 44%] Building CXX object CMakeFiles/OpenMM.dir/libraries/csha1/src/SHA1.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/libraries/csha1/src/SHA1.cpp.o -MF CMakeFiles/OpenMM.dir/libraries/csha1/src/SHA1.cpp.o.d -o CMakeFiles/OpenMM.dir/libraries/csha1/src/SHA1.cpp.o -c /<>/libraries/csha1/src/SHA1.cpp 1 warning generated. [ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/ReferenceKernelFactory.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/platforms/reference/src/ReferenceKernelFactory.cpp.o -MF CMakeFiles/OpenMM.dir/platforms/reference/src/ReferenceKernelFactory.cpp.o.d -o CMakeFiles/OpenMM.dir/platforms/reference/src/ReferenceKernelFactory.cpp.o -c /<>/platforms/reference/src/ReferenceKernelFactory.cpp 1 warning generated. [ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/ReferenceKernels.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/platforms/reference/src/ReferenceKernels.cpp.o -MF CMakeFiles/OpenMM.dir/platforms/reference/src/ReferenceKernels.cpp.o.d -o CMakeFiles/OpenMM.dir/platforms/reference/src/ReferenceKernels.cpp.o -c /<>/platforms/reference/src/ReferenceKernels.cpp [ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/ReferencePlatform.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/platforms/reference/src/ReferencePlatform.cpp.o -MF CMakeFiles/OpenMM.dir/platforms/reference/src/ReferencePlatform.cpp.o.d -o CMakeFiles/OpenMM.dir/platforms/reference/src/ReferencePlatform.cpp.o -c /<>/platforms/reference/src/ReferencePlatform.cpp [ 46%] Building CXX object CMakeFiles/OpenMM.dir/platforms/reference/src/ReferencePointFunctions.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/platforms/reference/src/ReferencePointFunctions.cpp.o -MF 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-I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ObcParameters.cpp.o -MF CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ObcParameters.cpp.o.d -o CMakeFiles/OpenMM.dir/platforms/reference/src/SimTKReference/ObcParameters.cpp.o -c 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-I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -MD -MT CMakeFiles/OpenMM.dir/serialization/src/CustomBondForceProxy.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/CustomBondForceProxy.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/CustomBondForceProxy.cpp.o -c /<>/serialization/src/CustomBondForceProxy.cpp [ 53%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/CustomCVForceProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 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-DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -MD -MT CMakeFiles/OpenMM.dir/serialization/src/PeriodicTorsionForceProxy.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/PeriodicTorsionForceProxy.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/PeriodicTorsionForceProxy.cpp.o -c /<>/serialization/src/PeriodicTorsionForceProxy.cpp [ 55%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/RBTorsionForceProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -MD -MT CMakeFiles/OpenMM.dir/serialization/src/RBTorsionForceProxy.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/RBTorsionForceProxy.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/RBTorsionForceProxy.cpp.o -c /<>/serialization/src/RBTorsionForceProxy.cpp [ 55%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/RMSDForceProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -MD -MT CMakeFiles/OpenMM.dir/serialization/src/RMSDForceProxy.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/RMSDForceProxy.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/RMSDForceProxy.cpp.o -c /<>/serialization/src/RMSDForceProxy.cpp [ 55%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/SerializationNode.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -MD -MT CMakeFiles/OpenMM.dir/serialization/src/SerializationNode.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/SerializationNode.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/SerializationNode.cpp.o -c /<>/serialization/src/SerializationNode.cpp [ 57%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/SerializationProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -MD -MT CMakeFiles/OpenMM.dir/serialization/src/SerializationProxy.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/SerializationProxy.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/SerializationProxy.cpp.o -c /<>/serialization/src/SerializationProxy.cpp [ 57%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/SerializationProxyRegistration.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -MD -MT CMakeFiles/OpenMM.dir/serialization/src/SerializationProxyRegistration.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/SerializationProxyRegistration.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/SerializationProxyRegistration.cpp.o -c /<>/serialization/src/SerializationProxyRegistration.cpp [ 57%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/StateProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -MD -MT CMakeFiles/OpenMM.dir/serialization/src/StateProxy.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/StateProxy.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/StateProxy.cpp.o -c /<>/serialization/src/StateProxy.cpp [ 57%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/SystemProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -MD -MT CMakeFiles/OpenMM.dir/serialization/src/SystemProxy.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/SystemProxy.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/SystemProxy.cpp.o -c /<>/serialization/src/SystemProxy.cpp [ 57%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/TabulatedFunctionProxies.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -MD -MT CMakeFiles/OpenMM.dir/serialization/src/TabulatedFunctionProxies.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/TabulatedFunctionProxies.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/TabulatedFunctionProxies.cpp.o -c /<>/serialization/src/TabulatedFunctionProxies.cpp [ 57%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/VariableLangevinIntegratorProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -MD -MT CMakeFiles/OpenMM.dir/serialization/src/VariableLangevinIntegratorProxy.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/VariableLangevinIntegratorProxy.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/VariableLangevinIntegratorProxy.cpp.o -c /<>/serialization/src/VariableLangevinIntegratorProxy.cpp [ 57%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/VariableVerletIntegratorProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -MD -MT CMakeFiles/OpenMM.dir/serialization/src/VariableVerletIntegratorProxy.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/VariableVerletIntegratorProxy.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/VariableVerletIntegratorProxy.cpp.o -c /<>/serialization/src/VariableVerletIntegratorProxy.cpp [ 57%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/VerletIntegratorProxy.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -MD -MT CMakeFiles/OpenMM.dir/serialization/src/VerletIntegratorProxy.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/VerletIntegratorProxy.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/VerletIntegratorProxy.cpp.o -c /<>/serialization/src/VerletIntegratorProxy.cpp [ 57%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/XmlSerializer.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -MD -MT CMakeFiles/OpenMM.dir/serialization/src/XmlSerializer.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/XmlSerializer.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/XmlSerializer.cpp.o -c /<>/serialization/src/XmlSerializer.cpp [ 57%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/dtoa.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -MD -MT CMakeFiles/OpenMM.dir/serialization/src/dtoa.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/dtoa.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/dtoa.cpp.o -c /<>/serialization/src/dtoa.cpp /<>/serialization/src/dtoa.cpp:2650:18: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] if (match(&s,"nf")) { ^ /<>/serialization/src/dtoa.cpp:2652:20: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] if (!match(&s,"inity")) ^ /<>/serialization/src/dtoa.cpp:2661:19: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] if (match(&s, "an")) { ^ /<>/serialization/src/dtoa.cpp:3725:21: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] return nrv_alloc("Infinity", rve, 8); ^ /<>/serialization/src/dtoa.cpp:3727:20: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] return nrv_alloc("NaN", rve, 3); ^ /<>/serialization/src/dtoa.cpp:3735:20: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] return nrv_alloc("0", rve, 1); ^ /<>/serialization/src/XmlSerializer.cpp:168:17: warning: 5 enumeration values not handled in switch: 'EXN_NONE', 'EXN_TEXT', 'EXN_COMMENT'... [-Wswitch] switch (xml.getNodeType()) { ^ [ 57%] Building CXX object CMakeFiles/OpenMM.dir/serialization/src/g_fmt.cpp.o [ 57%] Building CXX object CMakeFiles/OpenMM.dir/libraries/irrxml/src/irrXML.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/libraries/irrxml/src/irrXML.cpp.o -MF CMakeFiles/OpenMM.dir/libraries/irrxml/src/irrXML.cpp.o.d -o CMakeFiles/OpenMM.dir/libraries/irrxml/src/irrXML.cpp.o -c /<>/libraries/irrxml/src/irrXML.cpp /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -DOPENMM_BUILDING_SHARED_LIBRARY -DIEEE_8087 -MD -MT CMakeFiles/OpenMM.dir/serialization/src/g_fmt.cpp.o -MF CMakeFiles/OpenMM.dir/serialization/src/g_fmt.cpp.o.d -o CMakeFiles/OpenMM.dir/serialization/src/g_fmt.cpp.o -c /<>/serialization/src/g_fmt.cpp /<>/serialization/src/g_fmt.cpp:36:7: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] g_fmt(register char *b, double x) ^~~~~~~~~ /<>/serialization/src/g_fmt.cpp:38:2: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int i, k; ^~~~~~~~~ /<>/serialization/src/g_fmt.cpp:38:2: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int i, k; ^~~~~~~~~ /<>/serialization/src/g_fmt.cpp:39:2: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char *s; ^~~~~~~~~ /<>/serialization/src/g_fmt.cpp:55:14: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] while(*b++ = *s++); ~~~~~^~~~~~ /<>/serialization/src/g_fmt.cpp:55:14: note: place parentheses around the assignment to silence this warning while(*b++ = *s++); ^ ( ) /<>/serialization/src/g_fmt.cpp:55:14: note: use '==' to turn this assignment into an equality comparison while(*b++ = *s++); ^ == /<>/serialization/src/g_fmt.cpp:62:13: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] while(*b = *s++) ~~~^~~~~~ /<>/serialization/src/g_fmt.cpp:62:13: note: place parentheses around the assignment to silence this warning while(*b = *s++) ^ ( ) /<>/serialization/src/g_fmt.cpp:62:13: note: use '==' to turn this assignment into an equality comparison while(*b = *s++) ^ == /<>/serialization/src/g_fmt.cpp:88:14: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] while(*b++ = *s++); ~~~~~^~~~~~ /<>/serialization/src/g_fmt.cpp:88:14: note: place parentheses around the assignment to silence this warning while(*b++ = *s++); ^ ( ) /<>/serialization/src/g_fmt.cpp:88:14: note: use '==' to turn this assignment into an equality comparison while(*b++ = *s++); ^ == /<>/serialization/src/g_fmt.cpp:91:12: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] while(*b = *s++) { ~~~^~~~~~ /<>/serialization/src/g_fmt.cpp:91:12: note: place parentheses around the assignment to silence this warning while(*b = *s++) { ^ ( ) /<>/serialization/src/g_fmt.cpp:91:12: note: use '==' to turn this assignment into an equality comparison while(*b = *s++) { ^ == 8 warnings generated. [ 57%] Building CXX object CMakeFiles/OpenMM.dir/libraries/vecmath/src/vecmath.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/libraries/vecmath/src/vecmath.cpp.o -MF CMakeFiles/OpenMM.dir/libraries/vecmath/src/vecmath.cpp.o.d -o CMakeFiles/OpenMM.dir/libraries/vecmath/src/vecmath.cpp.o -c /<>/libraries/vecmath/src/vecmath.cpp 1 warning generated. [ 57%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/base/arch.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/libraries/asmjit/base/arch.cpp.o -MF CMakeFiles/OpenMM.dir/libraries/asmjit/base/arch.cpp.o.d -o CMakeFiles/OpenMM.dir/libraries/asmjit/base/arch.cpp.o -c /<>/libraries/asmjit/base/arch.cpp [ 57%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/base/assembler.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/libraries/asmjit/base/assembler.cpp.o -MF CMakeFiles/OpenMM.dir/libraries/asmjit/base/assembler.cpp.o.d -o CMakeFiles/OpenMM.dir/libraries/asmjit/base/assembler.cpp.o -c /<>/libraries/asmjit/base/assembler.cpp [ 57%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/base/codebuilder.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/libraries/asmjit/base/codebuilder.cpp.o -MF CMakeFiles/OpenMM.dir/libraries/asmjit/base/codebuilder.cpp.o.d -o CMakeFiles/OpenMM.dir/libraries/asmjit/base/codebuilder.cpp.o -c /<>/libraries/asmjit/base/codebuilder.cpp 6 warnings generated. [ 57%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/base/codecompiler.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/libraries/asmjit/base/codecompiler.cpp.o -MF CMakeFiles/OpenMM.dir/libraries/asmjit/base/codecompiler.cpp.o.d -o CMakeFiles/OpenMM.dir/libraries/asmjit/base/codecompiler.cpp.o -c /<>/libraries/asmjit/base/codecompiler.cpp [ 59%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/base/codeemitter.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/libraries/asmjit/base/codeemitter.cpp.o -MF CMakeFiles/OpenMM.dir/libraries/asmjit/base/codeemitter.cpp.o.d -o CMakeFiles/OpenMM.dir/libraries/asmjit/base/codeemitter.cpp.o -c /<>/libraries/asmjit/base/codeemitter.cpp [ 59%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/base/codeholder.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/libraries/asmjit/base/codeholder.cpp.o -MF CMakeFiles/OpenMM.dir/libraries/asmjit/base/codeholder.cpp.o.d -o CMakeFiles/OpenMM.dir/libraries/asmjit/base/codeholder.cpp.o -c /<>/libraries/asmjit/base/codeholder.cpp [ 59%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/base/constpool.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/libraries/asmjit/base/constpool.cpp.o -MF CMakeFiles/OpenMM.dir/libraries/asmjit/base/constpool.cpp.o.d -o CMakeFiles/OpenMM.dir/libraries/asmjit/base/constpool.cpp.o -c /<>/libraries/asmjit/base/constpool.cpp [ 59%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/base/cpuinfo.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/libraries/asmjit/base/cpuinfo.cpp.o -MF CMakeFiles/OpenMM.dir/libraries/asmjit/base/cpuinfo.cpp.o.d -o CMakeFiles/OpenMM.dir/libraries/asmjit/base/cpuinfo.cpp.o -c /<>/libraries/asmjit/base/cpuinfo.cpp [ 59%] Building CXX object CMakeFiles/OpenMM.dir/libraries/asmjit/base/func.cpp.o /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMM_EXPORTS -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -DPTHREAD_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT CMakeFiles/OpenMM.dir/libraries/asmjit/base/func.cpp.o -MF CMakeFiles/OpenMM.dir/libraries/asmjit/base/func.cpp.o.d -o CMakeFiles/OpenMM.dir/libraries/asmjit/base/func.cpp.o -c /<>/libraries/asmjit/base/func.cpp [ 59%] Building CXX 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceRMSDForce.dir/TestReferenceRMSDForce.cpp.o -MF CMakeFiles/TestReferenceRMSDForce.dir/TestReferenceRMSDForce.cpp.o.d -o CMakeFiles/TestReferenceRMSDForce.dir/TestReferenceRMSDForce.cpp.o -c /<>/platforms/reference/tests/TestReferenceRMSDForce.cpp [ 61%] Linking CXX executable ../../../TestReferenceVerletIntegrator cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceVerletIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceVerletIntegrator.dir/TestReferenceVerletIntegrator.cpp.o -o ../../../TestReferenceVerletIntegrator -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 63%] Linking CXX executable ../../../TestReferenceVariableVerletIntegrator cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceVariableVerletIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceVariableVerletIntegrator.dir/TestReferenceVariableVerletIntegrator.cpp.o -o ../../../TestReferenceVariableVerletIntegrator -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 63%] Built target TestReferenceVerletIntegrator make -f platforms/reference/tests/CMakeFiles/TestReferenceRBTorsionForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceRBTorsionForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/reference/tests /<>/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceRBTorsionForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceRBTorsionForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceRBTorsionForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 63%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceRBTorsionForce.dir/TestReferenceRBTorsionForce.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceRBTorsionForce.dir/TestReferenceRBTorsionForce.cpp.o -MF CMakeFiles/TestReferenceRBTorsionForce.dir/TestReferenceRBTorsionForce.cpp.o.d -o CMakeFiles/TestReferenceRBTorsionForce.dir/TestReferenceRBTorsionForce.cpp.o -c /<>/platforms/reference/tests/TestReferenceRBTorsionForce.cpp make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 63%] Built target TestReferenceVariableVerletIntegrator make -f platforms/reference/tests/CMakeFiles/TestReferencePeriodicTorsionForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferencePeriodicTorsionForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/reference/tests /<>/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferencePeriodicTorsionForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferencePeriodicTorsionForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferencePeriodicTorsionForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 63%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferencePeriodicTorsionForce.dir/TestReferencePeriodicTorsionForce.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferencePeriodicTorsionForce.dir/TestReferencePeriodicTorsionForce.cpp.o -MF CMakeFiles/TestReferencePeriodicTorsionForce.dir/TestReferencePeriodicTorsionForce.cpp.o.d -o CMakeFiles/TestReferencePeriodicTorsionForce.dir/TestReferencePeriodicTorsionForce.cpp.o -c /<>/platforms/reference/tests/TestReferencePeriodicTorsionForce.cpp [ 63%] Linking CXX executable ../../../TestReferenceRMSDForce cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceRMSDForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceRMSDForce.dir/TestReferenceRMSDForce.cpp.o -o ../../../TestReferenceRMSDForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 63%] Built target TestReferenceRMSDForce make -f platforms/reference/tests/CMakeFiles/TestReferenceNoseHooverIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceNoseHooverIntegrator.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/reference/tests /<>/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceNoseHooverIntegrator.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceNoseHooverIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceNoseHooverIntegrator.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 65%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceNoseHooverIntegrator.dir/TestReferenceNoseHooverIntegrator.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceNoseHooverIntegrator.dir/TestReferenceNoseHooverIntegrator.cpp.o -MF CMakeFiles/TestReferenceNoseHooverIntegrator.dir/TestReferenceNoseHooverIntegrator.cpp.o.d -o CMakeFiles/TestReferenceNoseHooverIntegrator.dir/TestReferenceNoseHooverIntegrator.cpp.o -c /<>/platforms/reference/tests/TestReferenceNoseHooverIntegrator.cpp [ 65%] Linking CXX executable ../../../TestReferenceVirtualSites cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceVirtualSites.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceVirtualSites.dir/TestReferenceVirtualSites.cpp.o -o ../../../TestReferenceVirtualSites -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 65%] Built target TestReferenceVirtualSites make -f platforms/reference/tests/CMakeFiles/TestReferenceNeighborList.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceNeighborList.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/reference/tests /<>/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceNeighborList.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceNeighborList.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceNeighborList.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 65%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceNeighborList.dir/TestReferenceNeighborList.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceNeighborList.dir/TestReferenceNeighborList.cpp.o -MF CMakeFiles/TestReferenceNeighborList.dir/TestReferenceNeighborList.cpp.o.d -o CMakeFiles/TestReferenceNeighborList.dir/TestReferenceNeighborList.cpp.o -c /<>/platforms/reference/tests/TestReferenceNeighborList.cpp [ 65%] Linking CXX executable ../../../TestReferenceRBTorsionForce cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceRBTorsionForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceRBTorsionForce.dir/TestReferenceRBTorsionForce.cpp.o -o ../../../TestReferenceRBTorsionForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 65%] Linking CXX executable ../../../TestReferencePeriodicTorsionForce cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferencePeriodicTorsionForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferencePeriodicTorsionForce.dir/TestReferencePeriodicTorsionForce.cpp.o -o ../../../TestReferencePeriodicTorsionForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 65%] Built target TestReferenceRBTorsionForce make -f platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloBarostat.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloBarostat.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/reference/tests /<>/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloBarostat.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloBarostat.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloBarostat.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 65%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloBarostat.dir/TestReferenceMonteCarloBarostat.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloBarostat.dir/TestReferenceMonteCarloBarostat.cpp.o -MF CMakeFiles/TestReferenceMonteCarloBarostat.dir/TestReferenceMonteCarloBarostat.cpp.o.d -o CMakeFiles/TestReferenceMonteCarloBarostat.dir/TestReferenceMonteCarloBarostat.cpp.o -c /<>/platforms/reference/tests/TestReferenceMonteCarloBarostat.cpp make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 65%] Built target TestReferencePeriodicTorsionForce make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomCompoundBondForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomCompoundBondForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/reference/tests /<>/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomCompoundBondForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomCompoundBondForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomCompoundBondForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 65%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomCompoundBondForce.dir/TestReferenceCustomCompoundBondForce.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceCustomCompoundBondForce.dir/TestReferenceCustomCompoundBondForce.cpp.o -MF CMakeFiles/TestReferenceCustomCompoundBondForce.dir/TestReferenceCustomCompoundBondForce.cpp.o.d -o CMakeFiles/TestReferenceCustomCompoundBondForce.dir/TestReferenceCustomCompoundBondForce.cpp.o -c /<>/platforms/reference/tests/TestReferenceCustomCompoundBondForce.cpp [ 65%] Linking CXX executable ../../../TestReferenceNeighborList cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceNeighborList.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceNeighborList.dir/TestReferenceNeighborList.cpp.o -o ../../../TestReferenceNeighborList -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 65%] Built target TestReferenceNeighborList make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomManyParticleForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomManyParticleForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/reference/tests /<>/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomManyParticleForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomManyParticleForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomManyParticleForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 65%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomManyParticleForce.dir/TestReferenceCustomManyParticleForce.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceCustomManyParticleForce.dir/TestReferenceCustomManyParticleForce.cpp.o -MF CMakeFiles/TestReferenceCustomManyParticleForce.dir/TestReferenceCustomManyParticleForce.cpp.o.d -o CMakeFiles/TestReferenceCustomManyParticleForce.dir/TestReferenceCustomManyParticleForce.cpp.o -c /<>/platforms/reference/tests/TestReferenceCustomManyParticleForce.cpp [ 65%] Linking CXX executable ../../../TestReferenceMonteCarloBarostat cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceMonteCarloBarostat.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceMonteCarloBarostat.dir/TestReferenceMonteCarloBarostat.cpp.o -o ../../../TestReferenceMonteCarloBarostat -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 65%] Built target TestReferenceMonteCarloBarostat make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomNonbondedForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomNonbondedForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/reference/tests /<>/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomNonbondedForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomNonbondedForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomNonbondedForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 65%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomNonbondedForce.dir/TestReferenceCustomNonbondedForce.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceCustomNonbondedForce.dir/TestReferenceCustomNonbondedForce.cpp.o -MF CMakeFiles/TestReferenceCustomNonbondedForce.dir/TestReferenceCustomNonbondedForce.cpp.o.d -o CMakeFiles/TestReferenceCustomNonbondedForce.dir/TestReferenceCustomNonbondedForce.cpp.o -c /<>/platforms/reference/tests/TestReferenceCustomNonbondedForce.cpp [ 65%] Linking CXX executable ../../../TestReferenceNoseHooverIntegrator cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceNoseHooverIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceNoseHooverIntegrator.dir/TestReferenceNoseHooverIntegrator.cpp.o -o ../../../TestReferenceNoseHooverIntegrator -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 65%] Built target TestReferenceNoseHooverIntegrator make -f platforms/reference/tests/CMakeFiles/TestReferenceHarmonicAngleForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceHarmonicAngleForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/reference/tests /<>/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceHarmonicAngleForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceHarmonicAngleForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceHarmonicAngleForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 65%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceHarmonicAngleForce.dir/TestReferenceHarmonicAngleForce.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceHarmonicAngleForce.dir/TestReferenceHarmonicAngleForce.cpp.o -MF CMakeFiles/TestReferenceHarmonicAngleForce.dir/TestReferenceHarmonicAngleForce.cpp.o.d -o CMakeFiles/TestReferenceHarmonicAngleForce.dir/TestReferenceHarmonicAngleForce.cpp.o -c /<>/platforms/reference/tests/TestReferenceHarmonicAngleForce.cpp [ 65%] Linking CXX executable ../../../TestReferenceCustomCompoundBondForce cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomCompoundBondForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomCompoundBondForce.dir/TestReferenceCustomCompoundBondForce.cpp.o -o ../../../TestReferenceCustomCompoundBondForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 65%] Built target TestReferenceCustomCompoundBondForce make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomBondForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomBondForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/reference/tests /<>/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomBondForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomBondForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomBondForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 65%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomBondForce.dir/TestReferenceCustomBondForce.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceCustomBondForce.dir/TestReferenceCustomBondForce.cpp.o -MF CMakeFiles/TestReferenceCustomBondForce.dir/TestReferenceCustomBondForce.cpp.o.d -o CMakeFiles/TestReferenceCustomBondForce.dir/TestReferenceCustomBondForce.cpp.o -c /<>/platforms/reference/tests/TestReferenceCustomBondForce.cpp [ 65%] Linking CXX executable ../../../TestReferenceHarmonicAngleForce cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceHarmonicAngleForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceHarmonicAngleForce.dir/TestReferenceHarmonicAngleForce.cpp.o -o ../../../TestReferenceHarmonicAngleForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 65%] Built target TestReferenceHarmonicAngleForce make -f platforms/reference/tests/CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/reference/tests /<>/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 65%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/TestReferenceLangevinMiddleIntegrator.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/TestReferenceLangevinMiddleIntegrator.cpp.o -MF CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/TestReferenceLangevinMiddleIntegrator.cpp.o.d -o CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/TestReferenceLangevinMiddleIntegrator.cpp.o -c /<>/platforms/reference/tests/TestReferenceLangevinMiddleIntegrator.cpp [ 65%] Linking CXX executable ../../../TestReferenceCustomManyParticleForce cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomManyParticleForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomManyParticleForce.dir/TestReferenceCustomManyParticleForce.cpp.o -o ../../../TestReferenceCustomManyParticleForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 65%] Built target TestReferenceCustomManyParticleForce make -f platforms/reference/tests/CMakeFiles/TestReferenceCompoundIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCompoundIntegrator.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/reference/tests /<>/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCompoundIntegrator.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCompoundIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCompoundIntegrator.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 65%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCompoundIntegrator.dir/TestReferenceCompoundIntegrator.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceCompoundIntegrator.dir/TestReferenceCompoundIntegrator.cpp.o -MF CMakeFiles/TestReferenceCompoundIntegrator.dir/TestReferenceCompoundIntegrator.cpp.o.d -o CMakeFiles/TestReferenceCompoundIntegrator.dir/TestReferenceCompoundIntegrator.cpp.o -c /<>/platforms/reference/tests/TestReferenceCompoundIntegrator.cpp [ 65%] Linking CXX executable ../../../TestReferenceCustomBondForce cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomBondForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomBondForce.dir/TestReferenceCustomBondForce.cpp.o -o ../../../TestReferenceCustomBondForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 65%] Built target TestReferenceCustomBondForce make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomExternalForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomExternalForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/reference/tests /<>/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomExternalForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomExternalForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomExternalForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 65%] Linking CXX executable ../../../TestReferenceLangevinMiddleIntegrator cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/link.txt --verbose=1 [ 65%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomExternalForce.dir/TestReferenceCustomExternalForce.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceCustomExternalForce.dir/TestReferenceCustomExternalForce.cpp.o -MF CMakeFiles/TestReferenceCustomExternalForce.dir/TestReferenceCustomExternalForce.cpp.o.d -o CMakeFiles/TestReferenceCustomExternalForce.dir/TestReferenceCustomExternalForce.cpp.o -c /<>/platforms/reference/tests/TestReferenceCustomExternalForce.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceLangevinMiddleIntegrator.dir/TestReferenceLangevinMiddleIntegrator.cpp.o -o ../../../TestReferenceLangevinMiddleIntegrator -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 65%] Built target TestReferenceLangevinMiddleIntegrator make -f platforms/reference/tests/CMakeFiles/TestReferenceCheckpoints.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCheckpoints.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/reference/tests /<>/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCheckpoints.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCheckpoints.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCheckpoints.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 65%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCheckpoints.dir/TestReferenceCheckpoints.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceCheckpoints.dir/TestReferenceCheckpoints.cpp.o -MF CMakeFiles/TestReferenceCheckpoints.dir/TestReferenceCheckpoints.cpp.o.d -o CMakeFiles/TestReferenceCheckpoints.dir/TestReferenceCheckpoints.cpp.o -c /<>/platforms/reference/tests/TestReferenceCheckpoints.cpp [ 65%] Linking CXX executable ../../../TestReferenceCompoundIntegrator cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCompoundIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCompoundIntegrator.dir/TestReferenceCompoundIntegrator.cpp.o -o ../../../TestReferenceCompoundIntegrator -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 65%] Built target TestReferenceCompoundIntegrator make -f platforms/reference/tests/CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/reference/tests /<>/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 65%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/TestReferenceVariableLangevinIntegrator.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/TestReferenceVariableLangevinIntegrator.cpp.o -MF CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/TestReferenceVariableLangevinIntegrator.cpp.o.d -o CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/TestReferenceVariableLangevinIntegrator.cpp.o -c /<>/platforms/reference/tests/TestReferenceVariableLangevinIntegrator.cpp [ 68%] Linking CXX executable ../../../TestReferenceCheckpoints cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCheckpoints.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCheckpoints.dir/TestReferenceCheckpoints.cpp.o -o ../../../TestReferenceCheckpoints -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 68%] Built target TestReferenceCheckpoints make -f platforms/reference/tests/CMakeFiles/TestReferenceCMMotionRemover.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCMMotionRemover.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/reference/tests /<>/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCMMotionRemover.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCMMotionRemover.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCMMotionRemover.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 68%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCMMotionRemover.dir/TestReferenceCMMotionRemover.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceCMMotionRemover.dir/TestReferenceCMMotionRemover.cpp.o -MF CMakeFiles/TestReferenceCMMotionRemover.dir/TestReferenceCMMotionRemover.cpp.o.d -o CMakeFiles/TestReferenceCMMotionRemover.dir/TestReferenceCMMotionRemover.cpp.o -c /<>/platforms/reference/tests/TestReferenceCMMotionRemover.cpp [ 68%] Linking CXX executable ../../../TestReferenceCustomExternalForce cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomExternalForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomExternalForce.dir/TestReferenceCustomExternalForce.cpp.o -o ../../../TestReferenceCustomExternalForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 68%] Built target TestReferenceCustomExternalForce make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomAngleForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomAngleForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/reference/tests /<>/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomAngleForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomAngleForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomAngleForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 68%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomAngleForce.dir/TestReferenceCustomAngleForce.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceCustomAngleForce.dir/TestReferenceCustomAngleForce.cpp.o -MF CMakeFiles/TestReferenceCustomAngleForce.dir/TestReferenceCustomAngleForce.cpp.o.d -o CMakeFiles/TestReferenceCustomAngleForce.dir/TestReferenceCustomAngleForce.cpp.o -c /<>/platforms/reference/tests/TestReferenceCustomAngleForce.cpp [ 68%] Linking CXX executable ../../../TestReferenceCMMotionRemover cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCMMotionRemover.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCMMotionRemover.dir/TestReferenceCMMotionRemover.cpp.o -o ../../../TestReferenceCMMotionRemover -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 68%] Built target TestReferenceCMMotionRemover make -f platforms/reference/tests/CMakeFiles/TestReferenceCMAPTorsionForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCMAPTorsionForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/reference/tests /<>/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCMAPTorsionForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCMAPTorsionForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCMAPTorsionForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 68%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCMAPTorsionForce.dir/TestReferenceCMAPTorsionForce.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceCMAPTorsionForce.dir/TestReferenceCMAPTorsionForce.cpp.o -MF CMakeFiles/TestReferenceCMAPTorsionForce.dir/TestReferenceCMAPTorsionForce.cpp.o.d -o CMakeFiles/TestReferenceCMAPTorsionForce.dir/TestReferenceCMAPTorsionForce.cpp.o -c /<>/platforms/reference/tests/TestReferenceCMAPTorsionForce.cpp [ 68%] Linking CXX executable ../../../TestReferenceVariableLangevinIntegrator cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceVariableLangevinIntegrator.dir/TestReferenceVariableLangevinIntegrator.cpp.o -o ../../../TestReferenceVariableLangevinIntegrator -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 68%] Built target TestReferenceVariableLangevinIntegrator make -f platforms/reference/tests/CMakeFiles/TestReferenceBrownianIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceBrownianIntegrator.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/reference/tests /<>/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceBrownianIntegrator.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceBrownianIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceBrownianIntegrator.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 68%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceBrownianIntegrator.dir/TestReferenceBrownianIntegrator.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceBrownianIntegrator.dir/TestReferenceBrownianIntegrator.cpp.o -MF CMakeFiles/TestReferenceBrownianIntegrator.dir/TestReferenceBrownianIntegrator.cpp.o.d -o CMakeFiles/TestReferenceBrownianIntegrator.dir/TestReferenceBrownianIntegrator.cpp.o -c /<>/platforms/reference/tests/TestReferenceBrownianIntegrator.cpp [ 68%] Linking CXX executable ../../../TestReferenceCustomNonbondedForce cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomNonbondedForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomNonbondedForce.dir/TestReferenceCustomNonbondedForce.cpp.o -o ../../../TestReferenceCustomNonbondedForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 68%] Built target TestReferenceCustomNonbondedForce make -f platforms/reference/tests/CMakeFiles/TestReferenceAndersenThermostat.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceAndersenThermostat.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/reference/tests /<>/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceAndersenThermostat.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceAndersenThermostat.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceAndersenThermostat.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 68%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceAndersenThermostat.dir/TestReferenceAndersenThermostat.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceAndersenThermostat.dir/TestReferenceAndersenThermostat.cpp.o -MF CMakeFiles/TestReferenceAndersenThermostat.dir/TestReferenceAndersenThermostat.cpp.o.d -o CMakeFiles/TestReferenceAndersenThermostat.dir/TestReferenceAndersenThermostat.cpp.o -c /<>/platforms/reference/tests/TestReferenceAndersenThermostat.cpp [ 68%] Linking CXX executable ../../../TestReferenceCustomAngleForce cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomAngleForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomAngleForce.dir/TestReferenceCustomAngleForce.cpp.o -o ../../../TestReferenceCustomAngleForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 68%] Built target TestReferenceCustomAngleForce make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomHbondForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomHbondForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/reference/tests /<>/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomHbondForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomHbondForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomHbondForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 70%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomHbondForce.dir/TestReferenceCustomHbondForce.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceCustomHbondForce.dir/TestReferenceCustomHbondForce.cpp.o -MF CMakeFiles/TestReferenceCustomHbondForce.dir/TestReferenceCustomHbondForce.cpp.o.d -o CMakeFiles/TestReferenceCustomHbondForce.dir/TestReferenceCustomHbondForce.cpp.o -c /<>/platforms/reference/tests/TestReferenceCustomHbondForce.cpp [ 70%] Linking CXX executable ../../../TestReferenceCMAPTorsionForce cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCMAPTorsionForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCMAPTorsionForce.dir/TestReferenceCMAPTorsionForce.cpp.o -o ../../../TestReferenceCMAPTorsionForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 70%] Built target TestReferenceCMAPTorsionForce make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomIntegrator.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/reference/tests /<>/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomIntegrator.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomIntegrator.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 70%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomIntegrator.dir/TestReferenceCustomIntegrator.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceCustomIntegrator.dir/TestReferenceCustomIntegrator.cpp.o -MF CMakeFiles/TestReferenceCustomIntegrator.dir/TestReferenceCustomIntegrator.cpp.o.d -o CMakeFiles/TestReferenceCustomIntegrator.dir/TestReferenceCustomIntegrator.cpp.o -c /<>/platforms/reference/tests/TestReferenceCustomIntegrator.cpp [ 70%] Linking CXX executable ../../../TestReferenceBrownianIntegrator cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceBrownianIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceBrownianIntegrator.dir/TestReferenceBrownianIntegrator.cpp.o -o ../../../TestReferenceBrownianIntegrator -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 70%] Linking CXX executable ../../../TestReferenceAndersenThermostat cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAndersenThermostat.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAndersenThermostat.dir/TestReferenceAndersenThermostat.cpp.o -o ../../../TestReferenceAndersenThermostat -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 70%] Built target TestReferenceBrownianIntegrator make -f platforms/reference/tests/CMakeFiles/TestReferenceLangevinIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceLangevinIntegrator.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/reference/tests /<>/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceLangevinIntegrator.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceLangevinIntegrator.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceLangevinIntegrator.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 70%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceLangevinIntegrator.dir/TestReferenceLangevinIntegrator.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceLangevinIntegrator.dir/TestReferenceLangevinIntegrator.cpp.o -MF CMakeFiles/TestReferenceLangevinIntegrator.dir/TestReferenceLangevinIntegrator.cpp.o.d -o CMakeFiles/TestReferenceLangevinIntegrator.dir/TestReferenceLangevinIntegrator.cpp.o -c /<>/platforms/reference/tests/TestReferenceLangevinIntegrator.cpp make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 70%] Built target TestReferenceAndersenThermostat make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomTorsionForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomTorsionForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/reference/tests /<>/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomTorsionForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomTorsionForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomTorsionForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 70%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomTorsionForce.dir/TestReferenceCustomTorsionForce.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceCustomTorsionForce.dir/TestReferenceCustomTorsionForce.cpp.o -MF CMakeFiles/TestReferenceCustomTorsionForce.dir/TestReferenceCustomTorsionForce.cpp.o.d -o CMakeFiles/TestReferenceCustomTorsionForce.dir/TestReferenceCustomTorsionForce.cpp.o -c /<>/platforms/reference/tests/TestReferenceCustomTorsionForce.cpp [ 70%] Linking CXX executable ../../../TestReferenceCustomHbondForce cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomHbondForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomHbondForce.dir/TestReferenceCustomHbondForce.cpp.o -o ../../../TestReferenceCustomHbondForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 70%] Built target TestReferenceCustomHbondForce make -f platforms/reference/tests/CMakeFiles/TestReferenceDispersionPME.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceDispersionPME.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/reference/tests /<>/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceDispersionPME.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceDispersionPME.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceDispersionPME.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 70%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceDispersionPME.dir/TestReferenceDispersionPME.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceDispersionPME.dir/TestReferenceDispersionPME.cpp.o -MF CMakeFiles/TestReferenceDispersionPME.dir/TestReferenceDispersionPME.cpp.o.d -o CMakeFiles/TestReferenceDispersionPME.dir/TestReferenceDispersionPME.cpp.o -c /<>/platforms/reference/tests/TestReferenceDispersionPME.cpp [ 70%] Linking CXX executable ../../../TestReferenceLangevinIntegrator cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceLangevinIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceLangevinIntegrator.dir/TestReferenceLangevinIntegrator.cpp.o -o ../../../TestReferenceLangevinIntegrator -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 70%] Built target TestReferenceLangevinIntegrator make -f platforms/reference/tests/CMakeFiles/TestReferenceNonbondedForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceNonbondedForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/reference/tests /<>/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceNonbondedForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceNonbondedForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceNonbondedForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 70%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceNonbondedForce.dir/TestReferenceNonbondedForce.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceNonbondedForce.dir/TestReferenceNonbondedForce.cpp.o -MF CMakeFiles/TestReferenceNonbondedForce.dir/TestReferenceNonbondedForce.cpp.o.d -o CMakeFiles/TestReferenceNonbondedForce.dir/TestReferenceNonbondedForce.cpp.o -c /<>/platforms/reference/tests/TestReferenceNonbondedForce.cpp [ 70%] Linking CXX executable ../../../TestReferenceCustomTorsionForce cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomTorsionForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomTorsionForce.dir/TestReferenceCustomTorsionForce.cpp.o -o ../../../TestReferenceCustomTorsionForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 70%] Built target TestReferenceCustomTorsionForce make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomGBForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomGBForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/reference/tests /<>/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomGBForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomGBForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomGBForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 70%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomGBForce.dir/TestReferenceCustomGBForce.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceCustomGBForce.dir/TestReferenceCustomGBForce.cpp.o -MF CMakeFiles/TestReferenceCustomGBForce.dir/TestReferenceCustomGBForce.cpp.o.d -o CMakeFiles/TestReferenceCustomGBForce.dir/TestReferenceCustomGBForce.cpp.o -c /<>/platforms/reference/tests/TestReferenceCustomGBForce.cpp [ 70%] Linking CXX executable ../../../TestReferenceCustomGBForce cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomGBForce.dir/link.txt --verbose=1 [ 70%] Linking CXX executable ../../../TestReferenceCustomIntegrator cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomGBForce.dir/TestReferenceCustomGBForce.cpp.o -o ../../../TestReferenceCustomGBForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomIntegrator.dir/TestReferenceCustomIntegrator.cpp.o -o ../../../TestReferenceCustomIntegrator -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 70%] Linking CXX executable ../../../TestReferenceDispersionPME cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceDispersionPME.dir/link.txt --verbose=1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceDispersionPME.dir/TestReferenceDispersionPME.cpp.o -o ../../../TestReferenceDispersionPME -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 70%] Built target TestReferenceCustomGBForce make -f platforms/reference/tests/CMakeFiles/TestReferenceKineticEnergy.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceKineticEnergy.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/reference/tests /<>/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceKineticEnergy.dir/DependInfo.cmake --color= [ 70%] Built target TestReferenceCustomIntegrator make -f platforms/reference/tests/CMakeFiles/TestReferenceEwald.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceEwald.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/reference/tests /<>/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceEwald.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceKineticEnergy.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceKineticEnergy.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceEwald.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceEwald.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 70%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceKineticEnergy.dir/TestReferenceKineticEnergy.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceKineticEnergy.dir/TestReferenceKineticEnergy.cpp.o -MF CMakeFiles/TestReferenceKineticEnergy.dir/TestReferenceKineticEnergy.cpp.o.d -o CMakeFiles/TestReferenceKineticEnergy.dir/TestReferenceKineticEnergy.cpp.o -c /<>/platforms/reference/tests/TestReferenceKineticEnergy.cpp [ 70%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceEwald.dir/TestReferenceEwald.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceEwald.dir/TestReferenceEwald.cpp.o -MF CMakeFiles/TestReferenceEwald.dir/TestReferenceEwald.cpp.o.d -o CMakeFiles/TestReferenceEwald.dir/TestReferenceEwald.cpp.o -c /<>/platforms/reference/tests/TestReferenceEwald.cpp make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 70%] Built target TestReferenceDispersionPME make -f platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/reference/tests /<>/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 70%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/TestReferenceMonteCarloMembraneBarostat.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/TestReferenceMonteCarloMembraneBarostat.cpp.o -MF CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/TestReferenceMonteCarloMembraneBarostat.cpp.o.d -o CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/TestReferenceMonteCarloMembraneBarostat.cpp.o -c /<>/platforms/reference/tests/TestReferenceMonteCarloMembraneBarostat.cpp [ 72%] Linking CXX executable ../../../TestReferenceKineticEnergy cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceKineticEnergy.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceKineticEnergy.dir/TestReferenceKineticEnergy.cpp.o -o ../../../TestReferenceKineticEnergy -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 72%] Linking CXX executable ../../../TestReferenceNonbondedForce cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceNonbondedForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceNonbondedForce.dir/TestReferenceNonbondedForce.cpp.o -o ../../../TestReferenceNonbondedForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 72%] Built target TestReferenceKineticEnergy make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomCentroidBondForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomCentroidBondForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/reference/tests /<>/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomCentroidBondForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomCentroidBondForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomCentroidBondForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 72%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomCentroidBondForce.dir/TestReferenceCustomCentroidBondForce.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceCustomCentroidBondForce.dir/TestReferenceCustomCentroidBondForce.cpp.o -MF CMakeFiles/TestReferenceCustomCentroidBondForce.dir/TestReferenceCustomCentroidBondForce.cpp.o.d -o CMakeFiles/TestReferenceCustomCentroidBondForce.dir/TestReferenceCustomCentroidBondForce.cpp.o -c /<>/platforms/reference/tests/TestReferenceCustomCentroidBondForce.cpp make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 72%] Built target TestReferenceNonbondedForce make -f platforms/reference/tests/CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/reference/tests /<>/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 72%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/TestReferenceLocalEnergyMinimizer.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/TestReferenceLocalEnergyMinimizer.cpp.o -MF CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/TestReferenceLocalEnergyMinimizer.cpp.o.d -o CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/TestReferenceLocalEnergyMinimizer.cpp.o -c /<>/platforms/reference/tests/TestReferenceLocalEnergyMinimizer.cpp [ 72%] Linking CXX executable ../../../TestReferenceMonteCarloMembraneBarostat cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceMonteCarloMembraneBarostat.dir/TestReferenceMonteCarloMembraneBarostat.cpp.o -o ../../../TestReferenceMonteCarloMembraneBarostat -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 72%] Built target TestReferenceMonteCarloMembraneBarostat make -f platforms/reference/tests/CMakeFiles/TestReferenceGayBerneForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceGayBerneForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/reference/tests /<>/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceGayBerneForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceGayBerneForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceGayBerneForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 72%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceGayBerneForce.dir/TestReferenceGayBerneForce.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceGayBerneForce.dir/TestReferenceGayBerneForce.cpp.o -MF CMakeFiles/TestReferenceGayBerneForce.dir/TestReferenceGayBerneForce.cpp.o.d -o CMakeFiles/TestReferenceGayBerneForce.dir/TestReferenceGayBerneForce.cpp.o -c /<>/platforms/reference/tests/TestReferenceGayBerneForce.cpp [ 72%] Linking CXX executable ../../../TestReferenceLocalEnergyMinimizer cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceLocalEnergyMinimizer.dir/TestReferenceLocalEnergyMinimizer.cpp.o -o ../../../TestReferenceLocalEnergyMinimizer -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 72%] Built target TestReferenceLocalEnergyMinimizer make -f platforms/reference/tests/CMakeFiles/TestReferenceSettle.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceSettle.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/reference/tests /<>/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceSettle.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceSettle.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceSettle.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 72%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceSettle.dir/TestReferenceSettle.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceSettle.dir/TestReferenceSettle.cpp.o -MF CMakeFiles/TestReferenceSettle.dir/TestReferenceSettle.cpp.o.d -o CMakeFiles/TestReferenceSettle.dir/TestReferenceSettle.cpp.o -c /<>/platforms/reference/tests/TestReferenceSettle.cpp [ 72%] Linking CXX executable ../../../TestReferenceGayBerneForce cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceGayBerneForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceGayBerneForce.dir/TestReferenceGayBerneForce.cpp.o -o ../../../TestReferenceGayBerneForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 72%] Built target TestReferenceGayBerneForce make -f platforms/reference/tests/CMakeFiles/TestReferenceGBSAOBCForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceGBSAOBCForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/reference/tests /<>/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceGBSAOBCForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceGBSAOBCForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceGBSAOBCForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 72%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceGBSAOBCForce.dir/TestReferenceGBSAOBCForce.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceGBSAOBCForce.dir/TestReferenceGBSAOBCForce.cpp.o -MF CMakeFiles/TestReferenceGBSAOBCForce.dir/TestReferenceGBSAOBCForce.cpp.o.d -o CMakeFiles/TestReferenceGBSAOBCForce.dir/TestReferenceGBSAOBCForce.cpp.o -c /<>/platforms/reference/tests/TestReferenceGBSAOBCForce.cpp [ 72%] Linking CXX executable ../../../TestReferenceSettle cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceSettle.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceSettle.dir/TestReferenceSettle.cpp.o -o ../../../TestReferenceSettle -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 72%] Built target TestReferenceSettle make -f platforms/reference/tests/CMakeFiles/TestReferenceHarmonicBondForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceHarmonicBondForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/reference/tests /<>/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceHarmonicBondForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceHarmonicBondForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceHarmonicBondForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 72%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceHarmonicBondForce.dir/TestReferenceHarmonicBondForce.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceHarmonicBondForce.dir/TestReferenceHarmonicBondForce.cpp.o -MF CMakeFiles/TestReferenceHarmonicBondForce.dir/TestReferenceHarmonicBondForce.cpp.o.d -o CMakeFiles/TestReferenceHarmonicBondForce.dir/TestReferenceHarmonicBondForce.cpp.o -c /<>/platforms/reference/tests/TestReferenceHarmonicBondForce.cpp [ 72%] Linking CXX executable ../../../TestReferenceCustomCentroidBondForce cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomCentroidBondForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomCentroidBondForce.dir/TestReferenceCustomCentroidBondForce.cpp.o -o ../../../TestReferenceCustomCentroidBondForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 72%] Built target TestReferenceCustomCentroidBondForce make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomCVForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomCVForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/reference/tests /<>/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceCustomCVForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceCustomCVForce.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceCustomCVForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 72%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceCustomCVForce.dir/TestReferenceCustomCVForce.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceCustomCVForce.dir/TestReferenceCustomCVForce.cpp.o -MF CMakeFiles/TestReferenceCustomCVForce.dir/TestReferenceCustomCVForce.cpp.o.d -o CMakeFiles/TestReferenceCustomCVForce.dir/TestReferenceCustomCVForce.cpp.o -c /<>/platforms/reference/tests/TestReferenceCustomCVForce.cpp [ 72%] Linking CXX executable ../../../TestReferenceGBSAOBCForce cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceGBSAOBCForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceGBSAOBCForce.dir/TestReferenceGBSAOBCForce.cpp.o -o ../../../TestReferenceGBSAOBCForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 72%] Built target TestReferenceGBSAOBCForce make -f platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/reference/tests /<>/obj-x86_64-linux-gnu/platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/build.make platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 72%] Building CXX object platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/TestReferenceMonteCarloAnisotropicBarostat.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/reference/tests/CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/TestReferenceMonteCarloAnisotropicBarostat.cpp.o -MF CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/TestReferenceMonteCarloAnisotropicBarostat.cpp.o.d -o CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/TestReferenceMonteCarloAnisotropicBarostat.cpp.o -c /<>/platforms/reference/tests/TestReferenceMonteCarloAnisotropicBarostat.cpp [ 72%] Linking CXX executable ../../../TestReferenceHarmonicBondForce cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceHarmonicBondForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceHarmonicBondForce.dir/TestReferenceHarmonicBondForce.cpp.o -o ../../../TestReferenceHarmonicBondForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu: ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 72%] Built target TestReferenceHarmonicBondForce make -f platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/build.make platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/cpu/sharedTarget /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget /<>/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/build.make platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 72%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuBondForce.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMCPU_EXPORTS -I/<>/platforms/cpu/src -I/<>/platforms/cpu/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -MD -MT platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuBondForce.cpp.o -MF CMakeFiles/OpenMMCPU.dir/__/src/CpuBondForce.cpp.o.d -o CMakeFiles/OpenMMCPU.dir/__/src/CpuBondForce.cpp.o -c /<>/platforms/cpu/src/CpuBondForce.cpp [ 72%] Linking CXX executable ../../../TestReferenceEwald cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceEwald.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceEwald.dir/TestReferenceEwald.cpp.o -o ../../../TestReferenceEwald -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 72%] Built target TestReferenceEwald make -f plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/build.make plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/plugins/amoeba /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/plugins/amoeba /<>/obj-x86_64-linux-gnu/plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/build.make plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 72%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaGeneralizedKirkwoodForce.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMAmoeba_EXPORTS -I/<>/plugins/amoeba/src -I/<>/plugins/amoeba/serialization/include -I/<>/plugins/amoeba/openmmapi/include -I/<>/plugins/amoeba/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaGeneralizedKirkwoodForce.cpp.o -MF CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaGeneralizedKirkwoodForce.cpp.o.d -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaGeneralizedKirkwoodForce.cpp.o -c /<>/plugins/amoeba/openmmapi/src/AmoebaGeneralizedKirkwoodForce.cpp [ 72%] Linking CXX executable ../../../TestReferenceCustomCVForce cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceCustomCVForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceCustomCVForce.dir/TestReferenceCustomCVForce.cpp.o -o ../../../TestReferenceCustomCVForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 72%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomGBForce.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMCPU_EXPORTS -I/<>/platforms/cpu/src -I/<>/platforms/cpu/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -MD -MT platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomGBForce.cpp.o -MF CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomGBForce.cpp.o.d -o CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomGBForce.cpp.o -c /<>/platforms/cpu/src/CpuCustomGBForce.cpp make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 72%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaGeneralizedKirkwoodForceImpl.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMAmoeba_EXPORTS -I/<>/plugins/amoeba/src -I/<>/plugins/amoeba/serialization/include -I/<>/plugins/amoeba/openmmapi/include -I/<>/plugins/amoeba/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaGeneralizedKirkwoodForceImpl.cpp.o -MF CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaGeneralizedKirkwoodForceImpl.cpp.o.d -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaGeneralizedKirkwoodForceImpl.cpp.o -c /<>/plugins/amoeba/openmmapi/src/AmoebaGeneralizedKirkwoodForceImpl.cpp [ 72%] Built target TestReferenceCustomCVForce make -f plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/build.make plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/plugins/rpmd /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/plugins/rpmd /<>/obj-x86_64-linux-gnu/plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/build.make plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 72%] Building CXX object plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDIntegrator.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/rpmd && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMRPMD_EXPORTS -I/<>/plugins/rpmd/src -I/<>/plugins/rpmd/openmmapi/include -I/<>/plugins/rpmd/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_RPMD_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDIntegrator.cpp.o -MF CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDIntegrator.cpp.o.d -o CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDIntegrator.cpp.o -c /<>/plugins/rpmd/openmmapi/src/RPMDIntegrator.cpp [ 72%] Linking CXX executable ../../../TestReferenceMonteCarloAnisotropicBarostat cd /<>/obj-x86_64-linux-gnu/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceMonteCarloAnisotropicBarostat.dir/TestReferenceMonteCarloAnisotropicBarostat.cpp.o -o ../../../TestReferenceMonteCarloAnisotropicBarostat -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 72%] Built target TestReferenceMonteCarloAnisotropicBarostat make -f plugins/drude/CMakeFiles/OpenMMDrude.dir/build.make plugins/drude/CMakeFiles/OpenMMDrude.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/plugins/drude /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/plugins/drude /<>/obj-x86_64-linux-gnu/plugins/drude/CMakeFiles/OpenMMDrude.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f plugins/drude/CMakeFiles/OpenMMDrude.dir/build.make plugins/drude/CMakeFiles/OpenMMDrude.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 72%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeForce.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMDrude_EXPORTS -I/<>/plugins/drude/src -I/<>/plugins/drude/serialization/include -I/<>/plugins/drude/openmmapi/include -I/<>/plugins/drude/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeForce.cpp.o -MF CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeForce.cpp.o.d -o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeForce.cpp.o -c /<>/plugins/drude/openmmapi/src/DrudeForce.cpp [ 72%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaMultipoleForce.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMAmoeba_EXPORTS -I/<>/plugins/amoeba/src -I/<>/plugins/amoeba/serialization/include -I/<>/plugins/amoeba/openmmapi/include -I/<>/plugins/amoeba/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaMultipoleForce.cpp.o -MF CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaMultipoleForce.cpp.o.d -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaMultipoleForce.cpp.o -c /<>/plugins/amoeba/openmmapi/src/AmoebaMultipoleForce.cpp [ 72%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeForceImpl.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMDrude_EXPORTS -I/<>/plugins/drude/src -I/<>/plugins/drude/serialization/include -I/<>/plugins/drude/openmmapi/include -I/<>/plugins/drude/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeForceImpl.cpp.o -MF CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeForceImpl.cpp.o.d -o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeForceImpl.cpp.o -c /<>/plugins/drude/openmmapi/src/DrudeForceImpl.cpp [ 72%] Building CXX object plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDMonteCarloBarostat.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/rpmd && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMRPMD_EXPORTS -I/<>/plugins/rpmd/src -I/<>/plugins/rpmd/openmmapi/include -I/<>/plugins/rpmd/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_RPMD_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDMonteCarloBarostat.cpp.o -MF CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDMonteCarloBarostat.cpp.o.d -o CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDMonteCarloBarostat.cpp.o -c /<>/plugins/rpmd/openmmapi/src/RPMDMonteCarloBarostat.cpp [ 72%] Building CXX object plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDMonteCarloBarostatImpl.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/rpmd && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMRPMD_EXPORTS -I/<>/plugins/rpmd/src -I/<>/plugins/rpmd/openmmapi/include -I/<>/plugins/rpmd/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_RPMD_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/rpmd/CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDMonteCarloBarostatImpl.cpp.o -MF CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDMonteCarloBarostatImpl.cpp.o.d -o CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDMonteCarloBarostatImpl.cpp.o -c /<>/plugins/rpmd/openmmapi/src/RPMDMonteCarloBarostatImpl.cpp [ 72%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaMultipoleForceImpl.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMAmoeba_EXPORTS -I/<>/plugins/amoeba/src -I/<>/plugins/amoeba/serialization/include -I/<>/plugins/amoeba/openmmapi/include -I/<>/plugins/amoeba/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaMultipoleForceImpl.cpp.o -MF CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaMultipoleForceImpl.cpp.o.d -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaMultipoleForceImpl.cpp.o -c /<>/plugins/amoeba/openmmapi/src/AmoebaMultipoleForceImpl.cpp [ 72%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeHelpers.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMDrude_EXPORTS -I/<>/plugins/drude/src -I/<>/plugins/drude/serialization/include -I/<>/plugins/drude/openmmapi/include -I/<>/plugins/drude/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeHelpers.cpp.o -MF CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeHelpers.cpp.o.d -o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeHelpers.cpp.o -c /<>/plugins/drude/openmmapi/src/DrudeHelpers.cpp /<>/plugins/drude/openmmapi/src/DrudeHelpers.cpp:97:55: warning: multiple unsequenced modifications to 'nextRandom' [-Wunsequenced] velocities[atom] = Vec3(randoms[nextRandom++], randoms[nextRandom++], randoms[nextRandom++])*velocityScale; ^ ~~ /<>/plugins/drude/openmmapi/src/DrudeHelpers.cpp:111:55: warning: multiple unsequenced modifications to 'nextRandom' [-Wunsequenced] Vec3 comVelocity = Vec3(randoms[nextRandom++], randoms[nextRandom++], randoms[nextRandom++])*sqrt(BOLTZ*temperature*invMass); ^ ~~ /<>/plugins/drude/openmmapi/src/DrudeHelpers.cpp:112:55: warning: multiple unsequenced modifications to 'nextRandom' [-Wunsequenced] Vec3 relVelocity = Vec3(randoms[nextRandom++], randoms[nextRandom++], randoms[nextRandom++])*sqrt(BOLTZ*drudeTemperature/redMass); ^ ~~ [ 72%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaTorsionTorsionForce.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMAmoeba_EXPORTS -I/<>/plugins/amoeba/src -I/<>/plugins/amoeba/serialization/include -I/<>/plugins/amoeba/openmmapi/include -I/<>/plugins/amoeba/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaTorsionTorsionForce.cpp.o -MF CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaTorsionTorsionForce.cpp.o.d -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaTorsionTorsionForce.cpp.o -c /<>/plugins/amoeba/openmmapi/src/AmoebaTorsionTorsionForce.cpp 3 warnings generated. [ 72%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeIntegrator.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMDrude_EXPORTS -I/<>/plugins/drude/src -I/<>/plugins/drude/serialization/include -I/<>/plugins/drude/openmmapi/include -I/<>/plugins/drude/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeIntegrator.cpp.o -MF CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeIntegrator.cpp.o.d -o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeIntegrator.cpp.o -c /<>/plugins/drude/openmmapi/src/DrudeIntegrator.cpp [ 72%] Linking CXX shared library ../../libOpenMMRPMD.so cd /<>/obj-x86_64-linux-gnu/plugins/rpmd && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMRPMD.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt -Wl,-z,relro -Wl,--as-needed -Wl,-z,relro -Wl,--as-needed -shared -Wl,-soname,libOpenMMRPMD.so -o ../../libOpenMMRPMD.so CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDIntegrator.cpp.o CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDMonteCarloBarostat.cpp.o CMakeFiles/OpenMMRPMD.dir/openmmapi/src/RPMDMonteCarloBarostatImpl.cpp.o -Wl,-rpath,/<>/obj-x86_64-linux-gnu: /usr/lib/x86_64-linux-gnu/libdl.so ../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 72%] Built target OpenMMRPMD make -f serialization/tests/CMakeFiles/TestSerializeTabulatedFunctions.dir/build.make serialization/tests/CMakeFiles/TestSerializeTabulatedFunctions.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/serialization/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/serialization/tests /<>/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeTabulatedFunctions.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeTabulatedFunctions.dir/build.make serialization/tests/CMakeFiles/TestSerializeTabulatedFunctions.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 72%] Building CXX object serialization/tests/CMakeFiles/TestSerializeTabulatedFunctions.dir/TestSerializeTabulatedFunctions.cpp.o cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeTabulatedFunctions.dir/TestSerializeTabulatedFunctions.cpp.o -MF CMakeFiles/TestSerializeTabulatedFunctions.dir/TestSerializeTabulatedFunctions.cpp.o.d -o CMakeFiles/TestSerializeTabulatedFunctions.dir/TestSerializeTabulatedFunctions.cpp.o -c /<>/serialization/tests/TestSerializeTabulatedFunctions.cpp [ 72%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeLangevinIntegrator.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMDrude_EXPORTS -I/<>/plugins/drude/src -I/<>/plugins/drude/serialization/include -I/<>/plugins/drude/openmmapi/include -I/<>/plugins/drude/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeLangevinIntegrator.cpp.o -MF CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeLangevinIntegrator.cpp.o.d -o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeLangevinIntegrator.cpp.o -c /<>/plugins/drude/openmmapi/src/DrudeLangevinIntegrator.cpp [ 72%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomManyParticleForce.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMCPU_EXPORTS -I/<>/platforms/cpu/src -I/<>/platforms/cpu/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -MD -MT platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomManyParticleForce.cpp.o -MF CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomManyParticleForce.cpp.o.d -o CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomManyParticleForce.cpp.o -c /<>/platforms/cpu/src/CpuCustomManyParticleForce.cpp [ 72%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeNoseHooverIntegrator.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMDrude_EXPORTS -I/<>/plugins/drude/src -I/<>/plugins/drude/serialization/include -I/<>/plugins/drude/openmmapi/include -I/<>/plugins/drude/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeNoseHooverIntegrator.cpp.o -MF CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeNoseHooverIntegrator.cpp.o.d -o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeNoseHooverIntegrator.cpp.o -c /<>/plugins/drude/openmmapi/src/DrudeNoseHooverIntegrator.cpp [ 72%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaTorsionTorsionForceImpl.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMAmoeba_EXPORTS -I/<>/plugins/amoeba/src -I/<>/plugins/amoeba/serialization/include -I/<>/plugins/amoeba/openmmapi/include -I/<>/plugins/amoeba/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaTorsionTorsionForceImpl.cpp.o -MF CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaTorsionTorsionForceImpl.cpp.o.d -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaTorsionTorsionForceImpl.cpp.o -c /<>/plugins/amoeba/openmmapi/src/AmoebaTorsionTorsionForceImpl.cpp [ 74%] Linking CXX executable ../../TestSerializeTabulatedFunctions cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeTabulatedFunctions.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeTabulatedFunctions.dir/TestSerializeTabulatedFunctions.cpp.o -o ../../TestSerializeTabulatedFunctions -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 74%] Built target TestSerializeTabulatedFunctions make -f serialization/tests/CMakeFiles/TestSerializeCustomHbondForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomHbondForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/serialization/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/serialization/tests /<>/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomHbondForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCustomHbondForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomHbondForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 74%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomHbondForce.dir/TestSerializeCustomHbondForce.cpp.o cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeCustomHbondForce.dir/TestSerializeCustomHbondForce.cpp.o -MF CMakeFiles/TestSerializeCustomHbondForce.dir/TestSerializeCustomHbondForce.cpp.o.d -o CMakeFiles/TestSerializeCustomHbondForce.dir/TestSerializeCustomHbondForce.cpp.o -c /<>/serialization/tests/TestSerializeCustomHbondForce.cpp [ 74%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeSCFIntegrator.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMDrude_EXPORTS -I/<>/plugins/drude/src -I/<>/plugins/drude/serialization/include -I/<>/plugins/drude/openmmapi/include -I/<>/plugins/drude/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/drude/CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeSCFIntegrator.cpp.o -MF CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeSCFIntegrator.cpp.o.d -o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeSCFIntegrator.cpp.o -c /<>/plugins/drude/openmmapi/src/DrudeSCFIntegrator.cpp [ 76%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaVdwForce.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMAmoeba_EXPORTS -I/<>/plugins/amoeba/src -I/<>/plugins/amoeba/serialization/include -I/<>/plugins/amoeba/openmmapi/include -I/<>/plugins/amoeba/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaVdwForce.cpp.o -MF CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaVdwForce.cpp.o.d -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaVdwForce.cpp.o -c /<>/plugins/amoeba/openmmapi/src/AmoebaVdwForce.cpp [ 78%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeForceProxy.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMDrude_EXPORTS -I/<>/plugins/drude/src -I/<>/plugins/drude/serialization/include -I/<>/plugins/drude/openmmapi/include -I/<>/plugins/drude/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/drude/CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeForceProxy.cpp.o -MF CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeForceProxy.cpp.o.d -o CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeForceProxy.cpp.o -c /<>/plugins/drude/serialization/src/DrudeForceProxy.cpp [ 78%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeLangevinIntegratorProxy.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMDrude_EXPORTS -I/<>/plugins/drude/src -I/<>/plugins/drude/serialization/include -I/<>/plugins/drude/openmmapi/include -I/<>/plugins/drude/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/drude/CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeLangevinIntegratorProxy.cpp.o -MF CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeLangevinIntegratorProxy.cpp.o.d -o CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeLangevinIntegratorProxy.cpp.o -c /<>/plugins/drude/serialization/src/DrudeLangevinIntegratorProxy.cpp [ 78%] Linking CXX executable ../../TestSerializeCustomHbondForce cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomHbondForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomHbondForce.dir/TestSerializeCustomHbondForce.cpp.o -o ../../TestSerializeCustomHbondForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 78%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomNonbondedForce.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMCPU_EXPORTS -I/<>/platforms/cpu/src -I/<>/platforms/cpu/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -MD -MT platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomNonbondedForce.cpp.o -MF CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomNonbondedForce.cpp.o.d -o CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomNonbondedForce.cpp.o -c /<>/platforms/cpu/src/CpuCustomNonbondedForce.cpp make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 78%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaVdwForceImpl.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMAmoeba_EXPORTS -I/<>/plugins/amoeba/src -I/<>/plugins/amoeba/serialization/include -I/<>/plugins/amoeba/openmmapi/include -I/<>/plugins/amoeba/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaVdwForceImpl.cpp.o -MF CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaVdwForceImpl.cpp.o.d -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaVdwForceImpl.cpp.o -c /<>/plugins/amoeba/openmmapi/src/AmoebaVdwForceImpl.cpp [ 78%] Built target TestSerializeCustomHbondForce make -f serialization/tests/CMakeFiles/TestSerializeCustomManyParticleForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomManyParticleForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/serialization/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/serialization/tests /<>/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomManyParticleForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCustomManyParticleForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomManyParticleForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 78%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomManyParticleForce.dir/TestSerializeCustomManyParticleForce.cpp.o cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeCustomManyParticleForce.dir/TestSerializeCustomManyParticleForce.cpp.o -MF CMakeFiles/TestSerializeCustomManyParticleForce.dir/TestSerializeCustomManyParticleForce.cpp.o.d -o CMakeFiles/TestSerializeCustomManyParticleForce.dir/TestSerializeCustomManyParticleForce.cpp.o -c /<>/serialization/tests/TestSerializeCustomManyParticleForce.cpp [ 78%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeNoseHooverIntegratorProxy.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMDrude_EXPORTS -I/<>/plugins/drude/src -I/<>/plugins/drude/serialization/include -I/<>/plugins/drude/openmmapi/include -I/<>/plugins/drude/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/drude/CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeNoseHooverIntegratorProxy.cpp.o -MF CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeNoseHooverIntegratorProxy.cpp.o.d -o CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeNoseHooverIntegratorProxy.cpp.o -c /<>/plugins/drude/serialization/src/DrudeNoseHooverIntegratorProxy.cpp [ 78%] Building CXX object plugins/drude/CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeSerializationProxyRegistration.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMDrude_EXPORTS -I/<>/plugins/drude/src -I/<>/plugins/drude/serialization/include -I/<>/plugins/drude/openmmapi/include -I/<>/plugins/drude/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_DRUDE_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/drude/CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeSerializationProxyRegistration.cpp.o -MF CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeSerializationProxyRegistration.cpp.o.d -o CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeSerializationProxyRegistration.cpp.o -c /<>/plugins/drude/serialization/src/DrudeSerializationProxyRegistration.cpp [ 78%] Linking CXX executable ../../TestSerializeCustomManyParticleForce cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomManyParticleForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomManyParticleForce.dir/TestSerializeCustomManyParticleForce.cpp.o -o ../../TestSerializeCustomManyParticleForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 78%] Built target TestSerializeCustomManyParticleForce make -f serialization/tests/CMakeFiles/TestSerializeCustomCVForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomCVForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/serialization/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/serialization/tests /<>/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomCVForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCustomCVForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomCVForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 78%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomCVForce.dir/TestSerializeCustomCVForce.cpp.o cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeCustomCVForce.dir/TestSerializeCustomCVForce.cpp.o -MF CMakeFiles/TestSerializeCustomCVForce.dir/TestSerializeCustomCVForce.cpp.o.d -o CMakeFiles/TestSerializeCustomCVForce.dir/TestSerializeCustomCVForce.cpp.o -c /<>/serialization/tests/TestSerializeCustomCVForce.cpp [ 78%] Linking CXX shared library ../../libOpenMMDrude.so cd /<>/obj-x86_64-linux-gnu/plugins/drude && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMDrude.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt -Wl,-z,relro -Wl,--as-needed -Wl,-z,relro -Wl,--as-needed -shared -Wl,-soname,libOpenMMDrude.so -o ../../libOpenMMDrude.so CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeForce.cpp.o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeForceImpl.cpp.o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeHelpers.cpp.o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeIntegrator.cpp.o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeLangevinIntegrator.cpp.o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeNoseHooverIntegrator.cpp.o CMakeFiles/OpenMMDrude.dir/openmmapi/src/DrudeSCFIntegrator.cpp.o CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeForceProxy.cpp.o CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeLangevinIntegratorProxy.cpp.o CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeNoseHooverIntegratorProxy.cpp.o CMakeFiles/OpenMMDrude.dir/serialization/src/DrudeSerializationProxyRegistration.cpp.o -Wl,-rpath,/<>/obj-x86_64-linux-gnu: /usr/lib/x86_64-linux-gnu/libdl.so ../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 78%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaWcaDispersionForce.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMAmoeba_EXPORTS -I/<>/plugins/amoeba/src -I/<>/plugins/amoeba/serialization/include -I/<>/plugins/amoeba/openmmapi/include -I/<>/plugins/amoeba/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaWcaDispersionForce.cpp.o -MF CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaWcaDispersionForce.cpp.o.d -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaWcaDispersionForce.cpp.o -c /<>/plugins/amoeba/openmmapi/src/AmoebaWcaDispersionForce.cpp make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 78%] Built target OpenMMDrude make -f serialization/tests/CMakeFiles/TestSerializeCustomAngleForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomAngleForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/serialization/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/serialization/tests /<>/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomAngleForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCustomAngleForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomAngleForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 78%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomAngleForce.dir/TestSerializeCustomAngleForce.cpp.o cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeCustomAngleForce.dir/TestSerializeCustomAngleForce.cpp.o -MF CMakeFiles/TestSerializeCustomAngleForce.dir/TestSerializeCustomAngleForce.cpp.o.d -o CMakeFiles/TestSerializeCustomAngleForce.dir/TestSerializeCustomAngleForce.cpp.o -c /<>/serialization/tests/TestSerializeCustomAngleForce.cpp [ 78%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaWcaDispersionForceImpl.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMAmoeba_EXPORTS -I/<>/plugins/amoeba/src -I/<>/plugins/amoeba/serialization/include -I/<>/plugins/amoeba/openmmapi/include -I/<>/plugins/amoeba/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaWcaDispersionForceImpl.cpp.o -MF CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaWcaDispersionForceImpl.cpp.o.d -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaWcaDispersionForceImpl.cpp.o -c /<>/plugins/amoeba/openmmapi/src/AmoebaWcaDispersionForceImpl.cpp [ 78%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuGBSAOBCForce.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMCPU_EXPORTS -I/<>/platforms/cpu/src -I/<>/platforms/cpu/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -MD -MT platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuGBSAOBCForce.cpp.o -MF CMakeFiles/OpenMMCPU.dir/__/src/CpuGBSAOBCForce.cpp.o.d -o CMakeFiles/OpenMMCPU.dir/__/src/CpuGBSAOBCForce.cpp.o -c /<>/platforms/cpu/src/CpuGBSAOBCForce.cpp [ 78%] Linking CXX executable ../../TestSerializeCustomCVForce cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomCVForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomCVForce.dir/TestSerializeCustomCVForce.cpp.o -o ../../TestSerializeCustomCVForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 78%] Built target TestSerializeCustomCVForce make -f serialization/tests/CMakeFiles/TestSerializeCMMotionRemover.dir/build.make serialization/tests/CMakeFiles/TestSerializeCMMotionRemover.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/serialization/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/serialization/tests /<>/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCMMotionRemover.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCMMotionRemover.dir/build.make serialization/tests/CMakeFiles/TestSerializeCMMotionRemover.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 78%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCMMotionRemover.dir/TestSerializeCMMotionRemover.cpp.o cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeCMMotionRemover.dir/TestSerializeCMMotionRemover.cpp.o -MF CMakeFiles/TestSerializeCMMotionRemover.dir/TestSerializeCMMotionRemover.cpp.o.d -o CMakeFiles/TestSerializeCMMotionRemover.dir/TestSerializeCMMotionRemover.cpp.o -c /<>/serialization/tests/TestSerializeCMMotionRemover.cpp [ 78%] Linking CXX executable ../../TestSerializeCustomAngleForce cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomAngleForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomAngleForce.dir/TestSerializeCustomAngleForce.cpp.o -o ../../TestSerializeCustomAngleForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 78%] Built target TestSerializeCustomAngleForce make -f serialization/tests/CMakeFiles/TestSerializeSystem.dir/build.make serialization/tests/CMakeFiles/TestSerializeSystem.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/serialization/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/serialization/tests /<>/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeSystem.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeSystem.dir/build.make serialization/tests/CMakeFiles/TestSerializeSystem.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 78%] Building CXX object serialization/tests/CMakeFiles/TestSerializeSystem.dir/TestSerializeSystem.cpp.o cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeSystem.dir/TestSerializeSystem.cpp.o -MF CMakeFiles/TestSerializeSystem.dir/TestSerializeSystem.cpp.o.d -o CMakeFiles/TestSerializeSystem.dir/TestSerializeSystem.cpp.o -c /<>/serialization/tests/TestSerializeSystem.cpp [ 78%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/HippoNonbondedForce.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMAmoeba_EXPORTS -I/<>/plugins/amoeba/src -I/<>/plugins/amoeba/serialization/include -I/<>/plugins/amoeba/openmmapi/include -I/<>/plugins/amoeba/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/HippoNonbondedForce.cpp.o -MF CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/HippoNonbondedForce.cpp.o.d -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/HippoNonbondedForce.cpp.o -c /<>/plugins/amoeba/openmmapi/src/HippoNonbondedForce.cpp /<>/serialization/tests/TestSerializeSystem.cpp:104:30: warning: expression with side effects will be evaluated despite being used as an operand to 'typeid' [-Wpotentially-evaluated-expression] ASSERT(typeid(system.getForce(i)) == typeid(system2.getForce(i))) ^ /<>/serialization/tests/TestSerializeSystem.cpp:104:61: warning: expression with side effects will be evaluated despite being used as an operand to 'typeid' [-Wpotentially-evaluated-expression] ASSERT(typeid(system.getForce(i)) == typeid(system2.getForce(i))) ^ [ 78%] Linking CXX executable ../../TestSerializeCMMotionRemover cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCMMotionRemover.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCMMotionRemover.dir/TestSerializeCMMotionRemover.cpp.o -o ../../TestSerializeCMMotionRemover -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 78%] Built target TestSerializeCMMotionRemover make -f serialization/tests/CMakeFiles/TestSerializeCustomBondForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomBondForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/serialization/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/serialization/tests /<>/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomBondForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCustomBondForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomBondForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 80%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomBondForce.dir/TestSerializeCustomBondForce.cpp.o cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeCustomBondForce.dir/TestSerializeCustomBondForce.cpp.o -MF CMakeFiles/TestSerializeCustomBondForce.dir/TestSerializeCustomBondForce.cpp.o.d -o CMakeFiles/TestSerializeCustomBondForce.dir/TestSerializeCustomBondForce.cpp.o -c /<>/serialization/tests/TestSerializeCustomBondForce.cpp [ 80%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuGayBerneForce.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMCPU_EXPORTS -I/<>/platforms/cpu/src -I/<>/platforms/cpu/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -MD -MT platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuGayBerneForce.cpp.o -MF CMakeFiles/OpenMMCPU.dir/__/src/CpuGayBerneForce.cpp.o.d -o CMakeFiles/OpenMMCPU.dir/__/src/CpuGayBerneForce.cpp.o -c /<>/platforms/cpu/src/CpuGayBerneForce.cpp [ 80%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/HippoNonbondedForceImpl.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMAmoeba_EXPORTS -I/<>/plugins/amoeba/src -I/<>/plugins/amoeba/serialization/include -I/<>/plugins/amoeba/openmmapi/include -I/<>/plugins/amoeba/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/HippoNonbondedForceImpl.cpp.o -MF CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/HippoNonbondedForceImpl.cpp.o.d -o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/HippoNonbondedForceImpl.cpp.o -c /<>/plugins/amoeba/openmmapi/src/HippoNonbondedForceImpl.cpp 2 warnings generated. [ 80%] Linking CXX executable ../../TestSerializeSystem cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeSystem.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeSystem.dir/TestSerializeSystem.cpp.o -o ../../TestSerializeSystem -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 80%] Built target TestSerializeSystem make -f serialization/tests/CMakeFiles/TestSerializeGayBerneForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeGayBerneForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/serialization/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/serialization/tests /<>/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeGayBerneForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeGayBerneForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeGayBerneForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 80%] Building CXX object serialization/tests/CMakeFiles/TestSerializeGayBerneForce.dir/TestSerializeGayBerneForce.cpp.o cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeGayBerneForce.dir/TestSerializeGayBerneForce.cpp.o -MF CMakeFiles/TestSerializeGayBerneForce.dir/TestSerializeGayBerneForce.cpp.o.d -o CMakeFiles/TestSerializeGayBerneForce.dir/TestSerializeGayBerneForce.cpp.o -c /<>/serialization/tests/TestSerializeGayBerneForce.cpp [ 80%] Linking CXX executable ../../TestSerializeCustomBondForce cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomBondForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomBondForce.dir/TestSerializeCustomBondForce.cpp.o -o ../../TestSerializeCustomBondForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 80%] Built target TestSerializeCustomBondForce make -f serialization/tests/CMakeFiles/TestSerializePeriodicTorsionForce.dir/build.make serialization/tests/CMakeFiles/TestSerializePeriodicTorsionForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/serialization/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/serialization/tests /<>/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializePeriodicTorsionForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializePeriodicTorsionForce.dir/build.make serialization/tests/CMakeFiles/TestSerializePeriodicTorsionForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 80%] Building CXX object serialization/tests/CMakeFiles/TestSerializePeriodicTorsionForce.dir/TestSerializePeriodicTorsionForce.cpp.o cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializePeriodicTorsionForce.dir/TestSerializePeriodicTorsionForce.cpp.o -MF CMakeFiles/TestSerializePeriodicTorsionForce.dir/TestSerializePeriodicTorsionForce.cpp.o.d -o CMakeFiles/TestSerializePeriodicTorsionForce.dir/TestSerializePeriodicTorsionForce.cpp.o -c /<>/serialization/tests/TestSerializePeriodicTorsionForce.cpp [ 80%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaGeneralizedKirkwoodForceProxy.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMAmoeba_EXPORTS -I/<>/plugins/amoeba/src -I/<>/plugins/amoeba/serialization/include -I/<>/plugins/amoeba/openmmapi/include -I/<>/plugins/amoeba/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaGeneralizedKirkwoodForceProxy.cpp.o -MF CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaGeneralizedKirkwoodForceProxy.cpp.o.d -o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaGeneralizedKirkwoodForceProxy.cpp.o -c /<>/plugins/amoeba/serialization/src/AmoebaGeneralizedKirkwoodForceProxy.cpp [ 80%] Linking CXX executable ../../TestSerializeGayBerneForce cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeGayBerneForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeGayBerneForce.dir/TestSerializeGayBerneForce.cpp.o -o ../../TestSerializeGayBerneForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 80%] Linking CXX executable ../../TestSerializePeriodicTorsionForce cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializePeriodicTorsionForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializePeriodicTorsionForce.dir/TestSerializePeriodicTorsionForce.cpp.o -o ../../TestSerializePeriodicTorsionForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 80%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaMultipoleForceProxy.cpp.o [ 80%] Built target TestSerializeGayBerneForce cd /<>/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMAmoeba_EXPORTS -I/<>/plugins/amoeba/src -I/<>/plugins/amoeba/serialization/include -I/<>/plugins/amoeba/openmmapi/include -I/<>/plugins/amoeba/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaMultipoleForceProxy.cpp.o -MF CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaMultipoleForceProxy.cpp.o.d -o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaMultipoleForceProxy.cpp.o -c /<>/plugins/amoeba/serialization/src/AmoebaMultipoleForceProxy.cpp make -f serialization/tests/CMakeFiles/TestSerializeRBTorsionForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeRBTorsionForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/serialization/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/serialization/tests /<>/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeRBTorsionForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeRBTorsionForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeRBTorsionForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 80%] Building CXX object serialization/tests/CMakeFiles/TestSerializeRBTorsionForce.dir/TestSerializeRBTorsionForce.cpp.o cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeRBTorsionForce.dir/TestSerializeRBTorsionForce.cpp.o -MF CMakeFiles/TestSerializeRBTorsionForce.dir/TestSerializeRBTorsionForce.cpp.o.d -o CMakeFiles/TestSerializeRBTorsionForce.dir/TestSerializeRBTorsionForce.cpp.o -c /<>/serialization/tests/TestSerializeRBTorsionForce.cpp make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 80%] Built target TestSerializePeriodicTorsionForce make -f serialization/tests/CMakeFiles/TestSerializeCustomCompoundBondForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomCompoundBondForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/serialization/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/serialization/tests /<>/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomCompoundBondForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCustomCompoundBondForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomCompoundBondForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 80%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomCompoundBondForce.dir/TestSerializeCustomCompoundBondForce.cpp.o cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeCustomCompoundBondForce.dir/TestSerializeCustomCompoundBondForce.cpp.o -MF CMakeFiles/TestSerializeCustomCompoundBondForce.dir/TestSerializeCustomCompoundBondForce.cpp.o.d -o CMakeFiles/TestSerializeCustomCompoundBondForce.dir/TestSerializeCustomCompoundBondForce.cpp.o -c /<>/serialization/tests/TestSerializeCustomCompoundBondForce.cpp [ 80%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuKernelFactory.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMCPU_EXPORTS -I/<>/platforms/cpu/src -I/<>/platforms/cpu/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -MD -MT platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuKernelFactory.cpp.o -MF CMakeFiles/OpenMMCPU.dir/__/src/CpuKernelFactory.cpp.o.d -o CMakeFiles/OpenMMCPU.dir/__/src/CpuKernelFactory.cpp.o -c /<>/platforms/cpu/src/CpuKernelFactory.cpp [ 80%] Linking CXX executable ../../TestSerializeRBTorsionForce cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeRBTorsionForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeRBTorsionForce.dir/TestSerializeRBTorsionForce.cpp.o -o ../../TestSerializeRBTorsionForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 80%] Built target TestSerializeRBTorsionForce make -f serialization/tests/CMakeFiles/TestSerializeCustomCentroidBondForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomCentroidBondForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/serialization/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/serialization/tests /<>/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomCentroidBondForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCustomCentroidBondForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomCentroidBondForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 80%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomCentroidBondForce.dir/TestSerializeCustomCentroidBondForce.cpp.o cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeCustomCentroidBondForce.dir/TestSerializeCustomCentroidBondForce.cpp.o -MF CMakeFiles/TestSerializeCustomCentroidBondForce.dir/TestSerializeCustomCentroidBondForce.cpp.o.d -o CMakeFiles/TestSerializeCustomCentroidBondForce.dir/TestSerializeCustomCentroidBondForce.cpp.o -c /<>/serialization/tests/TestSerializeCustomCentroidBondForce.cpp [ 80%] Linking CXX executable ../../TestSerializeCustomCompoundBondForce cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomCompoundBondForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomCompoundBondForce.dir/TestSerializeCustomCompoundBondForce.cpp.o -o ../../TestSerializeCustomCompoundBondForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 80%] Built target TestSerializeCustomCompoundBondForce make -f serialization/tests/CMakeFiles/TestSerializeAndersenThermostat.dir/build.make serialization/tests/CMakeFiles/TestSerializeAndersenThermostat.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/serialization/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/serialization/tests /<>/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeAndersenThermostat.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeAndersenThermostat.dir/build.make serialization/tests/CMakeFiles/TestSerializeAndersenThermostat.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 80%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaSerializationProxyRegistration.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMAmoeba_EXPORTS -I/<>/plugins/amoeba/src -I/<>/plugins/amoeba/serialization/include -I/<>/plugins/amoeba/openmmapi/include -I/<>/plugins/amoeba/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaSerializationProxyRegistration.cpp.o -MF CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaSerializationProxyRegistration.cpp.o.d -o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaSerializationProxyRegistration.cpp.o -c /<>/plugins/amoeba/serialization/src/AmoebaSerializationProxyRegistration.cpp [ 80%] Building CXX object serialization/tests/CMakeFiles/TestSerializeAndersenThermostat.dir/TestSerializeAndersenThermostat.cpp.o cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeAndersenThermostat.dir/TestSerializeAndersenThermostat.cpp.o -MF CMakeFiles/TestSerializeAndersenThermostat.dir/TestSerializeAndersenThermostat.cpp.o.d -o CMakeFiles/TestSerializeAndersenThermostat.dir/TestSerializeAndersenThermostat.cpp.o -c /<>/serialization/tests/TestSerializeAndersenThermostat.cpp [ 80%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaTorsionTorsionForceProxy.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMAmoeba_EXPORTS -I/<>/plugins/amoeba/src -I/<>/plugins/amoeba/serialization/include -I/<>/plugins/amoeba/openmmapi/include -I/<>/plugins/amoeba/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaTorsionTorsionForceProxy.cpp.o -MF CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaTorsionTorsionForceProxy.cpp.o.d -o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaTorsionTorsionForceProxy.cpp.o -c /<>/plugins/amoeba/serialization/src/AmoebaTorsionTorsionForceProxy.cpp [ 80%] Linking CXX executable ../../TestSerializeAndersenThermostat cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeAndersenThermostat.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeAndersenThermostat.dir/TestSerializeAndersenThermostat.cpp.o -o ../../TestSerializeAndersenThermostat -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 80%] Built target TestSerializeAndersenThermostat make -f serialization/tests/CMakeFiles/TestSerializeHarmonicBondForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeHarmonicBondForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/serialization/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/serialization/tests /<>/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeHarmonicBondForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeHarmonicBondForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeHarmonicBondForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 80%] Building CXX object serialization/tests/CMakeFiles/TestSerializeHarmonicBondForce.dir/TestSerializeHarmonicBondForce.cpp.o cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeHarmonicBondForce.dir/TestSerializeHarmonicBondForce.cpp.o -MF CMakeFiles/TestSerializeHarmonicBondForce.dir/TestSerializeHarmonicBondForce.cpp.o.d -o CMakeFiles/TestSerializeHarmonicBondForce.dir/TestSerializeHarmonicBondForce.cpp.o -c /<>/serialization/tests/TestSerializeHarmonicBondForce.cpp [ 80%] Linking CXX executable ../../TestSerializeCustomCentroidBondForce cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomCentroidBondForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomCentroidBondForce.dir/TestSerializeCustomCentroidBondForce.cpp.o -o ../../TestSerializeCustomCentroidBondForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 80%] Built target TestSerializeCustomCentroidBondForce make -f serialization/tests/CMakeFiles/TestSerializationNode.dir/build.make serialization/tests/CMakeFiles/TestSerializationNode.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/serialization/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/serialization/tests /<>/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializationNode.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializationNode.dir/build.make serialization/tests/CMakeFiles/TestSerializationNode.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 80%] Building CXX object serialization/tests/CMakeFiles/TestSerializationNode.dir/TestSerializationNode.cpp.o cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializationNode.dir/TestSerializationNode.cpp.o -MF CMakeFiles/TestSerializationNode.dir/TestSerializationNode.cpp.o.d -o CMakeFiles/TestSerializationNode.dir/TestSerializationNode.cpp.o -c /<>/serialization/tests/TestSerializationNode.cpp [ 80%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuKernels.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMCPU_EXPORTS -I/<>/platforms/cpu/src -I/<>/platforms/cpu/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -MD -MT platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuKernels.cpp.o -MF CMakeFiles/OpenMMCPU.dir/__/src/CpuKernels.cpp.o.d -o CMakeFiles/OpenMMCPU.dir/__/src/CpuKernels.cpp.o -c /<>/platforms/cpu/src/CpuKernels.cpp [ 80%] Linking CXX executable ../../TestSerializeHarmonicBondForce cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeHarmonicBondForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeHarmonicBondForce.dir/TestSerializeHarmonicBondForce.cpp.o -o ../../TestSerializeHarmonicBondForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 80%] Built target TestSerializeHarmonicBondForce make -f serialization/tests/CMakeFiles/TestSerializeGBSAOBCForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeGBSAOBCForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/serialization/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/serialization/tests /<>/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeGBSAOBCForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeGBSAOBCForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeGBSAOBCForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 80%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaVdwForceProxy.cpp.o [ 80%] Building CXX object serialization/tests/CMakeFiles/TestSerializeGBSAOBCForce.dir/TestSerializeGBSAOBCForce.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMAmoeba_EXPORTS -I/<>/plugins/amoeba/src -I/<>/plugins/amoeba/serialization/include -I/<>/plugins/amoeba/openmmapi/include -I/<>/plugins/amoeba/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaVdwForceProxy.cpp.o -MF CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaVdwForceProxy.cpp.o.d -o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaVdwForceProxy.cpp.o -c /<>/plugins/amoeba/serialization/src/AmoebaVdwForceProxy.cpp cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeGBSAOBCForce.dir/TestSerializeGBSAOBCForce.cpp.o -MF CMakeFiles/TestSerializeGBSAOBCForce.dir/TestSerializeGBSAOBCForce.cpp.o.d -o CMakeFiles/TestSerializeGBSAOBCForce.dir/TestSerializeGBSAOBCForce.cpp.o -c /<>/serialization/tests/TestSerializeGBSAOBCForce.cpp [ 80%] Linking CXX executable ../../TestSerializationNode cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializationNode.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializationNode.dir/TestSerializationNode.cpp.o -o ../../TestSerializationNode -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 80%] Built target TestSerializationNode make -f serialization/tests/CMakeFiles/TestSerializeNonbondedForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeNonbondedForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/serialization/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/serialization/tests /<>/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeNonbondedForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeNonbondedForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeNonbondedForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 80%] Building CXX object serialization/tests/CMakeFiles/TestSerializeNonbondedForce.dir/TestSerializeNonbondedForce.cpp.o cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeNonbondedForce.dir/TestSerializeNonbondedForce.cpp.o -MF CMakeFiles/TestSerializeNonbondedForce.dir/TestSerializeNonbondedForce.cpp.o.d -o CMakeFiles/TestSerializeNonbondedForce.dir/TestSerializeNonbondedForce.cpp.o -c /<>/serialization/tests/TestSerializeNonbondedForce.cpp [ 80%] Linking CXX executable ../../TestSerializeGBSAOBCForce cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeGBSAOBCForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeGBSAOBCForce.dir/TestSerializeGBSAOBCForce.cpp.o -o ../../TestSerializeGBSAOBCForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 80%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaWcaDispersionForceProxy.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMAmoeba_EXPORTS -I/<>/plugins/amoeba/src -I/<>/plugins/amoeba/serialization/include -I/<>/plugins/amoeba/openmmapi/include -I/<>/plugins/amoeba/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaWcaDispersionForceProxy.cpp.o -MF CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaWcaDispersionForceProxy.cpp.o.d -o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaWcaDispersionForceProxy.cpp.o -c /<>/plugins/amoeba/serialization/src/AmoebaWcaDispersionForceProxy.cpp make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 80%] Built target TestSerializeGBSAOBCForce make -f serialization/tests/CMakeFiles/TestSerializeMonteCarloBarostat.dir/build.make serialization/tests/CMakeFiles/TestSerializeMonteCarloBarostat.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/serialization/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/serialization/tests /<>/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeMonteCarloBarostat.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeMonteCarloBarostat.dir/build.make serialization/tests/CMakeFiles/TestSerializeMonteCarloBarostat.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 80%] Building CXX object serialization/tests/CMakeFiles/TestSerializeMonteCarloBarostat.dir/TestSerializeMonteCarloBarostat.cpp.o cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeMonteCarloBarostat.dir/TestSerializeMonteCarloBarostat.cpp.o -MF CMakeFiles/TestSerializeMonteCarloBarostat.dir/TestSerializeMonteCarloBarostat.cpp.o.d -o CMakeFiles/TestSerializeMonteCarloBarostat.dir/TestSerializeMonteCarloBarostat.cpp.o -c /<>/serialization/tests/TestSerializeMonteCarloBarostat.cpp [ 80%] Building CXX object plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/HippoNonbondedForceProxy.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMAmoeba_EXPORTS -I/<>/plugins/amoeba/src -I/<>/plugins/amoeba/serialization/include -I/<>/plugins/amoeba/openmmapi/include -I/<>/plugins/amoeba/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_AMOEBA_BUILDING_SHARED_LIBRARY -DLEPTON_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/CMakeFiles/OpenMMAmoeba.dir/serialization/src/HippoNonbondedForceProxy.cpp.o -MF CMakeFiles/OpenMMAmoeba.dir/serialization/src/HippoNonbondedForceProxy.cpp.o.d -o CMakeFiles/OpenMMAmoeba.dir/serialization/src/HippoNonbondedForceProxy.cpp.o -c /<>/plugins/amoeba/serialization/src/HippoNonbondedForceProxy.cpp [ 80%] Linking CXX executable ../../TestSerializeMonteCarloBarostat cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeMonteCarloBarostat.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeMonteCarloBarostat.dir/TestSerializeMonteCarloBarostat.cpp.o -o ../../TestSerializeMonteCarloBarostat -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 80%] Built target TestSerializeMonteCarloBarostat make -f serialization/tests/CMakeFiles/TestSerializeCustomNonbondedForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomNonbondedForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/serialization/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/serialization/tests /<>/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomNonbondedForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCustomNonbondedForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomNonbondedForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 80%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomNonbondedForce.dir/TestSerializeCustomNonbondedForce.cpp.o cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeCustomNonbondedForce.dir/TestSerializeCustomNonbondedForce.cpp.o -MF CMakeFiles/TestSerializeCustomNonbondedForce.dir/TestSerializeCustomNonbondedForce.cpp.o.d -o CMakeFiles/TestSerializeCustomNonbondedForce.dir/TestSerializeCustomNonbondedForce.cpp.o -c /<>/serialization/tests/TestSerializeCustomNonbondedForce.cpp [ 80%] Linking CXX executable ../../TestSerializeNonbondedForce cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeNonbondedForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeNonbondedForce.dir/TestSerializeNonbondedForce.cpp.o -o ../../TestSerializeNonbondedForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 80%] Built target TestSerializeNonbondedForce make -f serialization/tests/CMakeFiles/TestSerializeCustomTorsionForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomTorsionForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/serialization/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/serialization/tests /<>/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomTorsionForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCustomTorsionForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomTorsionForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 80%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomTorsionForce.dir/TestSerializeCustomTorsionForce.cpp.o cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeCustomTorsionForce.dir/TestSerializeCustomTorsionForce.cpp.o -MF CMakeFiles/TestSerializeCustomTorsionForce.dir/TestSerializeCustomTorsionForce.cpp.o.d -o CMakeFiles/TestSerializeCustomTorsionForce.dir/TestSerializeCustomTorsionForce.cpp.o -c /<>/serialization/tests/TestSerializeCustomTorsionForce.cpp [ 80%] Linking CXX shared library ../../libOpenMMAmoeba.so cd /<>/obj-x86_64-linux-gnu/plugins/amoeba && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMAmoeba.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt -Wl,-z,relro -Wl,--as-needed -Wl,-z,relro -Wl,--as-needed -shared -Wl,-soname,libOpenMMAmoeba.so -o ../../libOpenMMAmoeba.so CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaGeneralizedKirkwoodForce.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaGeneralizedKirkwoodForceImpl.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaMultipoleForce.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaMultipoleForceImpl.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaTorsionTorsionForce.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaTorsionTorsionForceImpl.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaVdwForce.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaVdwForceImpl.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaWcaDispersionForce.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/AmoebaWcaDispersionForceImpl.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/HippoNonbondedForce.cpp.o CMakeFiles/OpenMMAmoeba.dir/openmmapi/src/HippoNonbondedForceImpl.cpp.o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaGeneralizedKirkwoodForceProxy.cpp.o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaMultipoleForceProxy.cpp.o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaSerializationProxyRegistration.cpp.o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaTorsionTorsionForceProxy.cpp.o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaVdwForceProxy.cpp.o CMakeFiles/OpenMMAmoeba.dir/serialization/src/AmoebaWcaDispersionForceProxy.cpp.o CMakeFiles/OpenMMAmoeba.dir/serialization/src/HippoNonbondedForceProxy.cpp.o -Wl,-rpath,/<>/obj-x86_64-linux-gnu: /usr/lib/x86_64-linux-gnu/libdl.so ../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 80%] Built target OpenMMAmoeba make -f serialization/tests/CMakeFiles/TestSerializeCustomGBForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomGBForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/serialization/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/serialization/tests /<>/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomGBForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCustomGBForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomGBForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 80%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomGBForce.dir/TestSerializeCustomGBForce.cpp.o cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeCustomGBForce.dir/TestSerializeCustomGBForce.cpp.o -MF CMakeFiles/TestSerializeCustomGBForce.dir/TestSerializeCustomGBForce.cpp.o.d -o CMakeFiles/TestSerializeCustomGBForce.dir/TestSerializeCustomGBForce.cpp.o -c /<>/serialization/tests/TestSerializeCustomGBForce.cpp [ 80%] Linking CXX executable ../../TestSerializeCustomTorsionForce cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomTorsionForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomTorsionForce.dir/TestSerializeCustomTorsionForce.cpp.o -o ../../TestSerializeCustomTorsionForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 80%] Built target TestSerializeCustomTorsionForce make -f serialization/tests/CMakeFiles/TestSerializeIntegrator.dir/build.make serialization/tests/CMakeFiles/TestSerializeIntegrator.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/serialization/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/serialization/tests /<>/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeIntegrator.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeIntegrator.dir/build.make serialization/tests/CMakeFiles/TestSerializeIntegrator.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 80%] Building CXX object serialization/tests/CMakeFiles/TestSerializeIntegrator.dir/TestSerializeIntegrator.cpp.o cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeIntegrator.dir/TestSerializeIntegrator.cpp.o -MF CMakeFiles/TestSerializeIntegrator.dir/TestSerializeIntegrator.cpp.o.d -o CMakeFiles/TestSerializeIntegrator.dir/TestSerializeIntegrator.cpp.o -c /<>/serialization/tests/TestSerializeIntegrator.cpp [ 82%] Linking CXX executable ../../TestSerializeCustomNonbondedForce cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomNonbondedForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomNonbondedForce.dir/TestSerializeCustomNonbondedForce.cpp.o -o ../../TestSerializeCustomNonbondedForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 82%] Built target TestSerializeCustomNonbondedForce make -f serialization/tests/CMakeFiles/TestSerializeCMAPTorsion.dir/build.make serialization/tests/CMakeFiles/TestSerializeCMAPTorsion.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/serialization/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/serialization/tests /<>/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCMAPTorsion.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCMAPTorsion.dir/build.make serialization/tests/CMakeFiles/TestSerializeCMAPTorsion.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 82%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCMAPTorsion.dir/TestSerializeCMAPTorsion.cpp.o cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeCMAPTorsion.dir/TestSerializeCMAPTorsion.cpp.o -MF CMakeFiles/TestSerializeCMAPTorsion.dir/TestSerializeCMAPTorsion.cpp.o.d -o CMakeFiles/TestSerializeCMAPTorsion.dir/TestSerializeCMAPTorsion.cpp.o -c /<>/serialization/tests/TestSerializeCMAPTorsion.cpp [ 82%] Linking CXX executable ../../TestSerializeCustomGBForce cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomGBForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomGBForce.dir/TestSerializeCustomGBForce.cpp.o -o ../../TestSerializeCustomGBForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 82%] Linking CXX executable ../../TestSerializeCMAPTorsion cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCMAPTorsion.dir/link.txt --verbose=1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCMAPTorsion.dir/TestSerializeCMAPTorsion.cpp.o -o ../../TestSerializeCMAPTorsion -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 82%] Built target TestSerializeCustomGBForce make -f serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/build.make serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/serialization/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/serialization/tests /<>/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/build.make serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 82%] Building CXX object serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/TestSerializeMonteCarloAnisotropicBarostat.cpp.o cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/TestSerializeMonteCarloAnisotropicBarostat.cpp.o -MF CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/TestSerializeMonteCarloAnisotropicBarostat.cpp.o.d -o CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/TestSerializeMonteCarloAnisotropicBarostat.cpp.o -c /<>/serialization/tests/TestSerializeMonteCarloAnisotropicBarostat.cpp make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 82%] Built target TestSerializeCMAPTorsion make -f serialization/tests/CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/build.make serialization/tests/CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/serialization/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/serialization/tests /<>/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/build.make serialization/tests/CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 85%] Building CXX object serialization/tests/CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/TestSerializeMonteCarloMembraneBarostat.cpp.o cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/TestSerializeMonteCarloMembraneBarostat.cpp.o -MF CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/TestSerializeMonteCarloMembraneBarostat.cpp.o.d -o CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/TestSerializeMonteCarloMembraneBarostat.cpp.o -c /<>/serialization/tests/TestSerializeMonteCarloMembraneBarostat.cpp [ 85%] Linking CXX executable ../../TestSerializeIntegrator cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeIntegrator.dir/TestSerializeIntegrator.cpp.o -o ../../TestSerializeIntegrator -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 85%] Built target TestSerializeIntegrator make -f serialization/tests/CMakeFiles/TestSerializeCustomExternalForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomExternalForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/serialization/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/serialization/tests /<>/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeCustomExternalForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeCustomExternalForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeCustomExternalForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 85%] Building CXX object serialization/tests/CMakeFiles/TestSerializeCustomExternalForce.dir/TestSerializeCustomExternalForce.cpp.o cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeCustomExternalForce.dir/TestSerializeCustomExternalForce.cpp.o -MF CMakeFiles/TestSerializeCustomExternalForce.dir/TestSerializeCustomExternalForce.cpp.o.d -o CMakeFiles/TestSerializeCustomExternalForce.dir/TestSerializeCustomExternalForce.cpp.o -c /<>/serialization/tests/TestSerializeCustomExternalForce.cpp [ 85%] Linking CXX executable ../../TestSerializeMonteCarloAnisotropicBarostat cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeMonteCarloAnisotropicBarostat.dir/TestSerializeMonteCarloAnisotropicBarostat.cpp.o -o ../../TestSerializeMonteCarloAnisotropicBarostat -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 85%] Linking CXX executable ../../TestSerializeMonteCarloMembraneBarostat cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeMonteCarloMembraneBarostat.dir/TestSerializeMonteCarloMembraneBarostat.cpp.o -o ../../TestSerializeMonteCarloMembraneBarostat -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 85%] Built target TestSerializeMonteCarloAnisotropicBarostat make -f serialization/tests/CMakeFiles/TestSerializeNoseHooverIntegrator.dir/build.make serialization/tests/CMakeFiles/TestSerializeNoseHooverIntegrator.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/serialization/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/serialization/tests /<>/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeNoseHooverIntegrator.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeNoseHooverIntegrator.dir/build.make serialization/tests/CMakeFiles/TestSerializeNoseHooverIntegrator.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 85%] Building CXX object serialization/tests/CMakeFiles/TestSerializeNoseHooverIntegrator.dir/TestSerializeNoseHooverIntegrator.cpp.o cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeNoseHooverIntegrator.dir/TestSerializeNoseHooverIntegrator.cpp.o -MF CMakeFiles/TestSerializeNoseHooverIntegrator.dir/TestSerializeNoseHooverIntegrator.cpp.o.d -o CMakeFiles/TestSerializeNoseHooverIntegrator.dir/TestSerializeNoseHooverIntegrator.cpp.o -c /<>/serialization/tests/TestSerializeNoseHooverIntegrator.cpp make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 85%] Built target TestSerializeMonteCarloMembraneBarostat make -f serialization/tests/CMakeFiles/TestSerializeState.dir/build.make serialization/tests/CMakeFiles/TestSerializeState.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/serialization/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/serialization/tests /<>/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeState.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeState.dir/build.make serialization/tests/CMakeFiles/TestSerializeState.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 85%] Building CXX object serialization/tests/CMakeFiles/TestSerializeState.dir/TestSerializeState.cpp.o cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeState.dir/TestSerializeState.cpp.o -MF CMakeFiles/TestSerializeState.dir/TestSerializeState.cpp.o.d -o CMakeFiles/TestSerializeState.dir/TestSerializeState.cpp.o -c /<>/serialization/tests/TestSerializeState.cpp [ 85%] Linking CXX executable ../../TestSerializeCustomExternalForce cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeCustomExternalForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeCustomExternalForce.dir/TestSerializeCustomExternalForce.cpp.o -o ../../TestSerializeCustomExternalForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 85%] Built target TestSerializeCustomExternalForce make -f serialization/tests/CMakeFiles/TestSerializeHarmonicAngleForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeHarmonicAngleForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/serialization/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/serialization/tests /<>/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeHarmonicAngleForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeHarmonicAngleForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeHarmonicAngleForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 85%] Building CXX object serialization/tests/CMakeFiles/TestSerializeHarmonicAngleForce.dir/TestSerializeHarmonicAngleForce.cpp.o cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeHarmonicAngleForce.dir/TestSerializeHarmonicAngleForce.cpp.o -MF CMakeFiles/TestSerializeHarmonicAngleForce.dir/TestSerializeHarmonicAngleForce.cpp.o.d -o CMakeFiles/TestSerializeHarmonicAngleForce.dir/TestSerializeHarmonicAngleForce.cpp.o -c /<>/serialization/tests/TestSerializeHarmonicAngleForce.cpp [ 85%] Linking CXX executable ../../TestSerializeNoseHooverIntegrator cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeNoseHooverIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeNoseHooverIntegrator.dir/TestSerializeNoseHooverIntegrator.cpp.o -o ../../TestSerializeNoseHooverIntegrator -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 85%] Built target TestSerializeNoseHooverIntegrator make -f serialization/tests/CMakeFiles/TestSerializeRMSDForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeRMSDForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/serialization/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/serialization/tests /<>/obj-x86_64-linux-gnu/serialization/tests/CMakeFiles/TestSerializeRMSDForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f serialization/tests/CMakeFiles/TestSerializeRMSDForce.dir/build.make serialization/tests/CMakeFiles/TestSerializeRMSDForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 85%] Building CXX object serialization/tests/CMakeFiles/TestSerializeRMSDForce.dir/TestSerializeRMSDForce.cpp.o cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT serialization/tests/CMakeFiles/TestSerializeRMSDForce.dir/TestSerializeRMSDForce.cpp.o -MF CMakeFiles/TestSerializeRMSDForce.dir/TestSerializeRMSDForce.cpp.o.d -o CMakeFiles/TestSerializeRMSDForce.dir/TestSerializeRMSDForce.cpp.o -c /<>/serialization/tests/TestSerializeRMSDForce.cpp [ 85%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuLangevinDynamics.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMCPU_EXPORTS -I/<>/platforms/cpu/src -I/<>/platforms/cpu/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -MD -MT platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuLangevinDynamics.cpp.o -MF CMakeFiles/OpenMMCPU.dir/__/src/CpuLangevinDynamics.cpp.o.d -o CMakeFiles/OpenMMCPU.dir/__/src/CpuLangevinDynamics.cpp.o -c /<>/platforms/cpu/src/CpuLangevinDynamics.cpp [ 85%] Linking CXX executable ../../TestSerializeState cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeState.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeState.dir/TestSerializeState.cpp.o -o ../../TestSerializeState -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 85%] Built target TestSerializeState make -f tests/CMakeFiles/TestEnforcePeriodicBox.dir/build.make tests/CMakeFiles/TestEnforcePeriodicBox.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests /<>/obj-x86_64-linux-gnu/tests/CMakeFiles/TestEnforcePeriodicBox.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/TestEnforcePeriodicBox.dir/build.make tests/CMakeFiles/TestEnforcePeriodicBox.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 85%] Building CXX object tests/CMakeFiles/TestEnforcePeriodicBox.dir/TestEnforcePeriodicBox.cpp.o cd /<>/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT tests/CMakeFiles/TestEnforcePeriodicBox.dir/TestEnforcePeriodicBox.cpp.o -MF CMakeFiles/TestEnforcePeriodicBox.dir/TestEnforcePeriodicBox.cpp.o.d -o CMakeFiles/TestEnforcePeriodicBox.dir/TestEnforcePeriodicBox.cpp.o -c /<>/tests/TestEnforcePeriodicBox.cpp [ 85%] Linking CXX executable ../../TestSerializeHarmonicAngleForce cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeHarmonicAngleForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeHarmonicAngleForce.dir/TestSerializeHarmonicAngleForce.cpp.o -o ../../TestSerializeHarmonicAngleForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 85%] Built target TestSerializeHarmonicAngleForce make -f tests/CMakeFiles/TestFindExclusions.dir/build.make tests/CMakeFiles/TestFindExclusions.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests /<>/obj-x86_64-linux-gnu/tests/CMakeFiles/TestFindExclusions.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/TestFindExclusions.dir/build.make tests/CMakeFiles/TestFindExclusions.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 85%] Building CXX object tests/CMakeFiles/TestFindExclusions.dir/TestFindExclusions.cpp.o cd /<>/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT tests/CMakeFiles/TestFindExclusions.dir/TestFindExclusions.cpp.o -MF CMakeFiles/TestFindExclusions.dir/TestFindExclusions.cpp.o.d -o CMakeFiles/TestFindExclusions.dir/TestFindExclusions.cpp.o -c /<>/tests/TestFindExclusions.cpp [ 85%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuLangevinMiddleDynamics.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMCPU_EXPORTS -I/<>/platforms/cpu/src -I/<>/platforms/cpu/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -MD -MT platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuLangevinMiddleDynamics.cpp.o -MF CMakeFiles/OpenMMCPU.dir/__/src/CpuLangevinMiddleDynamics.cpp.o.d -o CMakeFiles/OpenMMCPU.dir/__/src/CpuLangevinMiddleDynamics.cpp.o -c /<>/platforms/cpu/src/CpuLangevinMiddleDynamics.cpp [ 85%] Linking CXX executable ../../TestSerializeRMSDForce cd /<>/obj-x86_64-linux-gnu/serialization/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerializeRMSDForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSerializeRMSDForce.dir/TestSerializeRMSDForce.cpp.o -o ../../TestSerializeRMSDForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 85%] Built target TestSerializeRMSDForce make -f tests/CMakeFiles/TestFindMolecules.dir/build.make tests/CMakeFiles/TestFindMolecules.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests /<>/obj-x86_64-linux-gnu/tests/CMakeFiles/TestFindMolecules.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/TestFindMolecules.dir/build.make tests/CMakeFiles/TestFindMolecules.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 85%] Building CXX object tests/CMakeFiles/TestFindMolecules.dir/TestFindMolecules.cpp.o cd /<>/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT tests/CMakeFiles/TestFindMolecules.dir/TestFindMolecules.cpp.o -MF CMakeFiles/TestFindMolecules.dir/TestFindMolecules.cpp.o.d -o CMakeFiles/TestFindMolecules.dir/TestFindMolecules.cpp.o -c /<>/tests/TestFindMolecules.cpp [ 87%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNeighborList.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMCPU_EXPORTS -I/<>/platforms/cpu/src -I/<>/platforms/cpu/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -MD -MT platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNeighborList.cpp.o -MF CMakeFiles/OpenMMCPU.dir/__/src/CpuNeighborList.cpp.o.d -o CMakeFiles/OpenMMCPU.dir/__/src/CpuNeighborList.cpp.o -c /<>/platforms/cpu/src/CpuNeighborList.cpp [ 87%] Linking CXX executable ../TestEnforcePeriodicBox cd /<>/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestEnforcePeriodicBox.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestEnforcePeriodicBox.dir/TestEnforcePeriodicBox.cpp.o -o ../TestEnforcePeriodicBox -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target TestEnforcePeriodicBox make -f tests/CMakeFiles/TestParser.dir/build.make tests/CMakeFiles/TestParser.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests /<>/obj-x86_64-linux-gnu/tests/CMakeFiles/TestParser.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/TestParser.dir/build.make tests/CMakeFiles/TestParser.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object tests/CMakeFiles/TestParser.dir/TestParser.cpp.o cd /<>/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT tests/CMakeFiles/TestParser.dir/TestParser.cpp.o -MF CMakeFiles/TestParser.dir/TestParser.cpp.o.d -o CMakeFiles/TestParser.dir/TestParser.cpp.o -c /<>/tests/TestParser.cpp [ 87%] Linking CXX executable ../TestFindMolecules cd /<>/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestFindMolecules.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestFindMolecules.dir/TestFindMolecules.cpp.o -o ../TestFindMolecules -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target TestFindMolecules make -f tests/CMakeFiles/TestSplineFitter.dir/build.make tests/CMakeFiles/TestSplineFitter.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests /<>/obj-x86_64-linux-gnu/tests/CMakeFiles/TestSplineFitter.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/TestSplineFitter.dir/build.make tests/CMakeFiles/TestSplineFitter.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object tests/CMakeFiles/TestSplineFitter.dir/TestSplineFitter.cpp.o cd /<>/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT tests/CMakeFiles/TestSplineFitter.dir/TestSplineFitter.cpp.o -MF CMakeFiles/TestSplineFitter.dir/TestSplineFitter.cpp.o.d -o CMakeFiles/TestSplineFitter.dir/TestSplineFitter.cpp.o -c /<>/tests/TestSplineFitter.cpp [ 87%] Linking CXX executable ../TestFindExclusions cd /<>/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestFindExclusions.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestFindExclusions.dir/TestFindExclusions.cpp.o -o ../TestFindExclusions -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target TestFindExclusions make -f tests/CMakeFiles/TestVectorizeAvx.dir/build.make tests/CMakeFiles/TestVectorizeAvx.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests /<>/obj-x86_64-linux-gnu/tests/CMakeFiles/TestVectorizeAvx.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/TestVectorizeAvx.dir/build.make tests/CMakeFiles/TestVectorizeAvx.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object tests/CMakeFiles/TestVectorizeAvx.dir/TestVectorizeAvx.cpp.o cd /<>/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -mavx -std=gnu++11 -MD -MT tests/CMakeFiles/TestVectorizeAvx.dir/TestVectorizeAvx.cpp.o -MF CMakeFiles/TestVectorizeAvx.dir/TestVectorizeAvx.cpp.o.d -o CMakeFiles/TestVectorizeAvx.dir/TestVectorizeAvx.cpp.o -c /<>/tests/TestVectorizeAvx.cpp In file included from /<>/tests/TestVectorizeAvx.cpp:40: /<>/tests/TestVectorizeGeneric.h:143:34: warning: implicit conversion from 'int' to 'float' changes value from 2147483647 to 2147483648 [-Wimplicit-const-int-float-conversion] return float(rand()) / float(RAND_MAX/100.0f) - 50.0f; ^~~~~~~~~ /usr/include/stdlib.h:86:18: note: expanded from macro 'RAND_MAX' #define RAND_MAX 2147483647 ^~~~~~~~~~ [ 87%] Linking CXX executable ../TestSplineFitter cd /<>/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSplineFitter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSplineFitter.dir/TestSplineFitter.cpp.o -o ../TestSplineFitter -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target TestSplineFitter make -f tests/CMakeFiles/TestSystem.dir/build.make tests/CMakeFiles/TestSystem.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests /<>/obj-x86_64-linux-gnu/tests/CMakeFiles/TestSystem.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/TestSystem.dir/build.make tests/CMakeFiles/TestSystem.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object tests/CMakeFiles/TestSystem.dir/TestSystem.cpp.o cd /<>/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT tests/CMakeFiles/TestSystem.dir/TestSystem.cpp.o -MF CMakeFiles/TestSystem.dir/TestSystem.cpp.o.d -o CMakeFiles/TestSystem.dir/TestSystem.cpp.o -c /<>/tests/TestSystem.cpp [ 87%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForce.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMCPU_EXPORTS -I/<>/platforms/cpu/src -I/<>/platforms/cpu/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -MD -MT platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForce.cpp.o -MF CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForce.cpp.o.d -o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForce.cpp.o -c /<>/platforms/cpu/src/CpuNonbondedForce.cpp 1 warning generated. [ 87%] Linking CXX executable ../TestVectorizeAvx cd /<>/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestVectorizeAvx.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestVectorizeAvx.dir/TestVectorizeAvx.cpp.o -o ../TestVectorizeAvx -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target TestVectorizeAvx make -f tests/CMakeFiles/TestVectorExpression.dir/build.make tests/CMakeFiles/TestVectorExpression.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests /<>/obj-x86_64-linux-gnu/tests/CMakeFiles/TestVectorExpression.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/TestVectorExpression.dir/build.make tests/CMakeFiles/TestVectorExpression.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object tests/CMakeFiles/TestVectorExpression.dir/TestVectorExpression.cpp.o cd /<>/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT tests/CMakeFiles/TestVectorExpression.dir/TestVectorExpression.cpp.o -MF CMakeFiles/TestVectorExpression.dir/TestVectorExpression.cpp.o.d -o CMakeFiles/TestVectorExpression.dir/TestVectorExpression.cpp.o -c /<>/tests/TestVectorExpression.cpp [ 87%] Linking CXX executable ../TestSystem cd /<>/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSystem.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestSystem.dir/TestSystem.cpp.o -o ../TestSystem -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 87%] Linking CXX executable ../TestParser cd /<>/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestParser.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestParser.dir/TestParser.cpp.o -o ../TestParser -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target TestSystem make -f tests/CMakeFiles/TestVectorize.dir/build.make tests/CMakeFiles/TestVectorize.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests /<>/obj-x86_64-linux-gnu/tests/CMakeFiles/TestVectorize.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/TestVectorize.dir/build.make tests/CMakeFiles/TestVectorize.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object tests/CMakeFiles/TestVectorize.dir/TestVectorize.cpp.o cd /<>/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -msse4.1 -std=gnu++11 -MD -MT tests/CMakeFiles/TestVectorize.dir/TestVectorize.cpp.o -MF CMakeFiles/TestVectorize.dir/TestVectorize.cpp.o.d -o CMakeFiles/TestVectorize.dir/TestVectorize.cpp.o -c /<>/tests/TestVectorize.cpp make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target TestParser make -f tests/CMakeFiles/TestVectorizeAvx2.dir/build.make tests/CMakeFiles/TestVectorizeAvx2.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/tests /<>/obj-x86_64-linux-gnu/tests/CMakeFiles/TestVectorizeAvx2.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tests/CMakeFiles/TestVectorizeAvx2.dir/build.make tests/CMakeFiles/TestVectorizeAvx2.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object tests/CMakeFiles/TestVectorizeAvx2.dir/TestVectorizeAvx2.cpp.o cd /<>/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -mfma -mavx2 -std=gnu++11 -MD -MT tests/CMakeFiles/TestVectorizeAvx2.dir/TestVectorizeAvx2.cpp.o -MF CMakeFiles/TestVectorizeAvx2.dir/TestVectorizeAvx2.cpp.o.d -o CMakeFiles/TestVectorizeAvx2.dir/TestVectorizeAvx2.cpp.o -c /<>/tests/TestVectorizeAvx2.cpp In file included from /<>/tests/TestVectorize.cpp:39: /<>/tests/TestVectorizeGeneric.h:143:34: warning: implicit conversion from 'int' to 'float' changes value from 2147483647 to 2147483648 [-Wimplicit-const-int-float-conversion] return float(rand()) / float(RAND_MAX/100.0f) - 50.0f; ^~~~~~~~~ /usr/include/stdlib.h:86:18: note: expanded from macro 'RAND_MAX' #define RAND_MAX 2147483647 ^~~~~~~~~~ [ 87%] Linking CXX executable ../TestVectorExpression cd /<>/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestVectorExpression.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestVectorExpression.dir/TestVectorExpression.cpp.o -o ../TestVectorExpression -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target TestVectorExpression make -f examples/CMakeFiles/HelloEthane.dir/build.make examples/CMakeFiles/HelloEthane.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/examples /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/examples /<>/obj-x86_64-linux-gnu/examples/CMakeFiles/HelloEthane.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f examples/CMakeFiles/HelloEthane.dir/build.make examples/CMakeFiles/HelloEthane.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object examples/CMakeFiles/HelloEthane.dir/HelloEthane.cpp.o cd /<>/obj-x86_64-linux-gnu/examples && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT examples/CMakeFiles/HelloEthane.dir/HelloEthane.cpp.o -MF CMakeFiles/HelloEthane.dir/HelloEthane.cpp.o.d -o CMakeFiles/HelloEthane.dir/HelloEthane.cpp.o -c /<>/examples/HelloEthane.cpp In file included from /<>/tests/TestVectorizeAvx2.cpp:48: /<>/tests/TestVectorizeGeneric.h:143:34: warning: implicit conversion from 'int' to 'float' changes value from 2147483647 to 2147483648 [-Wimplicit-const-int-float-conversion] return float(rand()) / float(RAND_MAX/100.0f) - 50.0f; ^~~~~~~~~ /usr/include/stdlib.h:86:18: note: expanded from macro 'RAND_MAX' #define RAND_MAX 2147483647 ^~~~~~~~~~ [ 87%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceAvx.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMCPU_EXPORTS -I/<>/platforms/cpu/src -I/<>/platforms/cpu/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -mavx -MD -MT platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceAvx.cpp.o -MF CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceAvx.cpp.o.d -o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceAvx.cpp.o -c /<>/platforms/cpu/src/CpuNonbondedForceAvx.cpp [ 87%] Linking CXX executable ../HelloEthane cd /<>/obj-x86_64-linux-gnu/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/HelloEthane.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/HelloEthane.dir/HelloEthane.cpp.o -o ../HelloEthane -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target HelloEthane make -f examples/CMakeFiles/HelloWaterBox.dir/build.make examples/CMakeFiles/HelloWaterBox.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/examples /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/examples /<>/obj-x86_64-linux-gnu/examples/CMakeFiles/HelloWaterBox.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f examples/CMakeFiles/HelloWaterBox.dir/build.make examples/CMakeFiles/HelloWaterBox.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object examples/CMakeFiles/HelloWaterBox.dir/HelloWaterBox.cpp.o cd /<>/obj-x86_64-linux-gnu/examples && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT examples/CMakeFiles/HelloWaterBox.dir/HelloWaterBox.cpp.o -MF CMakeFiles/HelloWaterBox.dir/HelloWaterBox.cpp.o.d -o CMakeFiles/HelloWaterBox.dir/HelloWaterBox.cpp.o -c /<>/examples/HelloWaterBox.cpp 1 warning generated. [ 87%] Linking CXX executable ../TestVectorizeAvx2 cd /<>/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestVectorizeAvx2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestVectorizeAvx2.dir/TestVectorizeAvx2.cpp.o -o ../TestVectorizeAvx2 -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target TestVectorizeAvx2 make -f examples/CMakeFiles/HelloSodiumChloride.dir/build.make examples/CMakeFiles/HelloSodiumChloride.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/examples /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/examples /<>/obj-x86_64-linux-gnu/examples/CMakeFiles/HelloSodiumChloride.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f examples/CMakeFiles/HelloSodiumChloride.dir/build.make examples/CMakeFiles/HelloSodiumChloride.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 87%] Building CXX object examples/CMakeFiles/HelloSodiumChloride.dir/HelloSodiumChloride.cpp.o cd /<>/obj-x86_64-linux-gnu/examples && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT examples/CMakeFiles/HelloSodiumChloride.dir/HelloSodiumChloride.cpp.o -MF CMakeFiles/HelloSodiumChloride.dir/HelloSodiumChloride.cpp.o.d -o CMakeFiles/HelloSodiumChloride.dir/HelloSodiumChloride.cpp.o -c /<>/examples/HelloSodiumChloride.cpp 1 warning generated. [ 87%] Linking CXX executable ../TestVectorize cd /<>/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestVectorize.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestVectorize.dir/TestVectorize.cpp.o -o ../TestVectorize -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target TestVectorize make -f examples/CMakeFiles/HelloArgon.dir/build.make examples/CMakeFiles/HelloArgon.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/examples /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/examples /<>/obj-x86_64-linux-gnu/examples/CMakeFiles/HelloArgon.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f examples/CMakeFiles/HelloArgon.dir/build.make examples/CMakeFiles/HelloArgon.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 89%] Building CXX object examples/CMakeFiles/HelloArgon.dir/HelloArgon.cpp.o cd /<>/obj-x86_64-linux-gnu/examples && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT examples/CMakeFiles/HelloArgon.dir/HelloArgon.cpp.o -MF CMakeFiles/HelloArgon.dir/HelloArgon.cpp.o.d -o CMakeFiles/HelloArgon.dir/HelloArgon.cpp.o -c /<>/examples/HelloArgon.cpp [ 89%] Linking CXX executable ../HelloWaterBox cd /<>/obj-x86_64-linux-gnu/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/HelloWaterBox.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/HelloWaterBox.dir/HelloWaterBox.cpp.o -o ../HelloWaterBox -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 89%] Linking CXX executable ../HelloSodiumChloride cd /<>/obj-x86_64-linux-gnu/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/HelloSodiumChloride.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/HelloSodiumChloride.dir/HelloSodiumChloride.cpp.o -o ../HelloSodiumChloride -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 89%] Built target HelloWaterBox make -f plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/build.make plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/plugins/amoeba/platforms/reference /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference /<>/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/build.make plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 89%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/AmoebaReferenceKernelFactory.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMAmoebaReference_EXPORTS -I/<>/platforms/reference/src/SimTKReference -I/<>/platforms/reference/src -I/<>/platforms/reference/include -I/<>/plugins/amoeba/platforms/reference/src/SimTKReference -I/<>/plugins/amoeba/platforms/reference/src -I/<>/plugins/amoeba/platforms/reference/./include -I/<>/plugins/amoeba/src -I/<>/plugins/amoeba/serialization/include -I/<>/plugins/amoeba/openmmapi/include -I/<>/plugins/amoeba/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/AmoebaReferenceKernelFactory.cpp.o -MF CMakeFiles/OpenMMAmoebaReference.dir/src/AmoebaReferenceKernelFactory.cpp.o.d -o CMakeFiles/OpenMMAmoebaReference.dir/src/AmoebaReferenceKernelFactory.cpp.o -c /<>/plugins/amoeba/platforms/reference/src/AmoebaReferenceKernelFactory.cpp make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 89%] Built target HelloSodiumChloride make -f plugins/rpmd/platforms/reference/CMakeFiles/OpenMMRPMDReference.dir/build.make plugins/rpmd/platforms/reference/CMakeFiles/OpenMMRPMDReference.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/plugins/rpmd/platforms/reference /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference /<>/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/CMakeFiles/OpenMMRPMDReference.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f plugins/rpmd/platforms/reference/CMakeFiles/OpenMMRPMDReference.dir/build.make plugins/rpmd/platforms/reference/CMakeFiles/OpenMMRPMDReference.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 89%] Building CXX object plugins/rpmd/platforms/reference/CMakeFiles/OpenMMRPMDReference.dir/src/ReferenceRpmdKernelFactory.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMRPMDReference_EXPORTS -I/<>/platforms/reference/src -I/<>/platforms/reference/include -I/<>/plugins/rpmd/platforms/reference/src -I/<>/plugins/rpmd/platforms/reference/./include -I/<>/plugins/rpmd/src -I/<>/plugins/rpmd/openmmapi/include -I/<>/plugins/rpmd/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/rpmd/platforms/reference/CMakeFiles/OpenMMRPMDReference.dir/src/ReferenceRpmdKernelFactory.cpp.o -MF CMakeFiles/OpenMMRPMDReference.dir/src/ReferenceRpmdKernelFactory.cpp.o.d -o CMakeFiles/OpenMMRPMDReference.dir/src/ReferenceRpmdKernelFactory.cpp.o -c /<>/plugins/rpmd/platforms/reference/src/ReferenceRpmdKernelFactory.cpp [ 89%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceAvx2.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMCPU_EXPORTS -I/<>/platforms/cpu/src -I/<>/platforms/cpu/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -mavx2 -mfma -MD -MT platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceAvx2.cpp.o -MF CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceAvx2.cpp.o.d -o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceAvx2.cpp.o -c /<>/platforms/cpu/src/CpuNonbondedForceAvx2.cpp [ 89%] Linking CXX executable ../HelloArgon cd /<>/obj-x86_64-linux-gnu/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/HelloArgon.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/HelloArgon.dir/HelloArgon.cpp.o -o ../HelloArgon -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 89%] Building CXX object plugins/rpmd/platforms/reference/CMakeFiles/OpenMMRPMDReference.dir/src/ReferenceRpmdKernels.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMRPMDReference_EXPORTS -I/<>/platforms/reference/src -I/<>/platforms/reference/include -I/<>/plugins/rpmd/platforms/reference/src -I/<>/plugins/rpmd/platforms/reference/./include -I/<>/plugins/rpmd/src -I/<>/plugins/rpmd/openmmapi/include -I/<>/plugins/rpmd/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/rpmd/platforms/reference/CMakeFiles/OpenMMRPMDReference.dir/src/ReferenceRpmdKernels.cpp.o -MF CMakeFiles/OpenMMRPMDReference.dir/src/ReferenceRpmdKernels.cpp.o.d -o CMakeFiles/OpenMMRPMDReference.dir/src/ReferenceRpmdKernels.cpp.o -c /<>/plugins/rpmd/platforms/reference/src/ReferenceRpmdKernels.cpp [ 89%] Built target HelloArgon make -f plugins/drude/platforms/reference/CMakeFiles/OpenMMDrudeReference.dir/build.make plugins/drude/platforms/reference/CMakeFiles/OpenMMDrudeReference.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/plugins/drude/platforms/reference /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/plugins/drude/platforms/reference /<>/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/CMakeFiles/OpenMMDrudeReference.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f plugins/drude/platforms/reference/CMakeFiles/OpenMMDrudeReference.dir/build.make plugins/drude/platforms/reference/CMakeFiles/OpenMMDrudeReference.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 89%] Building CXX object plugins/drude/platforms/reference/CMakeFiles/OpenMMDrudeReference.dir/src/ReferenceDrudeKernelFactory.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/drude/platforms/reference && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMDrudeReference_EXPORTS -I/<>/platforms/reference/src -I/<>/platforms/reference/include -I/<>/plugins/drude/platforms/reference/src -I/<>/plugins/drude/platforms/reference/./include -I/<>/plugins/drude/src -I/<>/plugins/drude/serialization/include -I/<>/plugins/drude/openmmapi/include -I/<>/plugins/drude/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/drude/platforms/reference/CMakeFiles/OpenMMDrudeReference.dir/src/ReferenceDrudeKernelFactory.cpp.o -MF CMakeFiles/OpenMMDrudeReference.dir/src/ReferenceDrudeKernelFactory.cpp.o.d -o CMakeFiles/OpenMMDrudeReference.dir/src/ReferenceDrudeKernelFactory.cpp.o -c /<>/plugins/drude/platforms/reference/src/ReferenceDrudeKernelFactory.cpp [ 89%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/AmoebaReferenceKernels.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMAmoebaReference_EXPORTS -I/<>/platforms/reference/src/SimTKReference -I/<>/platforms/reference/src -I/<>/platforms/reference/include -I/<>/plugins/amoeba/platforms/reference/src/SimTKReference -I/<>/plugins/amoeba/platforms/reference/src -I/<>/plugins/amoeba/platforms/reference/./include -I/<>/plugins/amoeba/src -I/<>/plugins/amoeba/serialization/include -I/<>/plugins/amoeba/openmmapi/include -I/<>/plugins/amoeba/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/AmoebaReferenceKernels.cpp.o -MF CMakeFiles/OpenMMAmoebaReference.dir/src/AmoebaReferenceKernels.cpp.o.d -o CMakeFiles/OpenMMAmoebaReference.dir/src/AmoebaReferenceKernels.cpp.o -c /<>/plugins/amoeba/platforms/reference/src/AmoebaReferenceKernels.cpp [ 89%] Building CXX object plugins/drude/platforms/reference/CMakeFiles/OpenMMDrudeReference.dir/src/ReferenceDrudeKernels.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/drude/platforms/reference && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMDrudeReference_EXPORTS -I/<>/platforms/reference/src -I/<>/platforms/reference/include -I/<>/plugins/drude/platforms/reference/src -I/<>/plugins/drude/platforms/reference/./include -I/<>/plugins/drude/src -I/<>/plugins/drude/serialization/include -I/<>/plugins/drude/openmmapi/include -I/<>/plugins/drude/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/drude/platforms/reference/CMakeFiles/OpenMMDrudeReference.dir/src/ReferenceDrudeKernels.cpp.o -MF CMakeFiles/OpenMMDrudeReference.dir/src/ReferenceDrudeKernels.cpp.o.d -o CMakeFiles/OpenMMDrudeReference.dir/src/ReferenceDrudeKernels.cpp.o -c /<>/plugins/drude/platforms/reference/src/ReferenceDrudeKernels.cpp [ 89%] Linking CXX shared library ../../../../libOpenMMRPMDReference.so cd /<>/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMRPMDReference.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt -Wl,-z,relro -Wl,--as-needed -Wl,-z,relro -Wl,--as-needed -shared -Wl,-soname,libOpenMMRPMDReference.so -o ../../../../libOpenMMRPMDReference.so CMakeFiles/OpenMMRPMDReference.dir/src/ReferenceRpmdKernelFactory.cpp.o CMakeFiles/OpenMMRPMDReference.dir/src/ReferenceRpmdKernels.cpp.o -Wl,-rpath,/<>/obj-x86_64-linux-gnu: ../../../../libOpenMMRPMD.so ../../../../libOpenMM.so.7.6 -lpthread /usr/lib/x86_64-linux-gnu/libdl.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 89%] Built target OpenMMRPMDReference make -f plugins/rpmd/platforms/reference/tests/CMakeFiles/TestReferenceRpmd.dir/build.make plugins/rpmd/platforms/reference/tests/CMakeFiles/TestReferenceRpmd.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/plugins/rpmd/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/tests /<>/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/tests/CMakeFiles/TestReferenceRpmd.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f plugins/rpmd/platforms/reference/tests/CMakeFiles/TestReferenceRpmd.dir/build.make plugins/rpmd/platforms/reference/tests/CMakeFiles/TestReferenceRpmd.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 89%] Building CXX object plugins/rpmd/platforms/reference/tests/CMakeFiles/TestReferenceRpmd.dir/TestReferenceRpmd.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/platforms/reference/src -I/<>/platforms/reference/include -I/<>/plugins/rpmd/platforms/reference/src -I/<>/plugins/rpmd/platforms/reference/./include -I/<>/plugins/rpmd/src -I/<>/plugins/rpmd/openmmapi/include -I/<>/plugins/rpmd/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -I/<>/platforms/reference/tests -I/<>/plugins/rpmd/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT plugins/rpmd/platforms/reference/tests/CMakeFiles/TestReferenceRpmd.dir/TestReferenceRpmd.cpp.o -MF CMakeFiles/TestReferenceRpmd.dir/TestReferenceRpmd.cpp.o.d -o CMakeFiles/TestReferenceRpmd.dir/TestReferenceRpmd.cpp.o -c /<>/plugins/rpmd/platforms/reference/tests/TestReferenceRpmd.cpp [ 89%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceFvec.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMCPU_EXPORTS -I/<>/platforms/cpu/src -I/<>/platforms/cpu/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -MD -MT platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceFvec.cpp.o -MF CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceFvec.cpp.o.d -o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceFvec.cpp.o -c /<>/platforms/cpu/src/CpuNonbondedForceFvec.cpp [ 89%] Linking CXX shared library ../../../../libOpenMMDrudeReference.so cd /<>/obj-x86_64-linux-gnu/plugins/drude/platforms/reference && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMDrudeReference.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt -Wl,-z,relro -Wl,--as-needed -Wl,-z,relro -Wl,--as-needed -shared -Wl,-soname,libOpenMMDrudeReference.so -o ../../../../libOpenMMDrudeReference.so CMakeFiles/OpenMMDrudeReference.dir/src/ReferenceDrudeKernelFactory.cpp.o CMakeFiles/OpenMMDrudeReference.dir/src/ReferenceDrudeKernels.cpp.o -Wl,-rpath,/<>/obj-x86_64-linux-gnu: ../../../../libOpenMMDrude.so ../../../../libOpenMM.so.7.6 -lpthread /usr/lib/x86_64-linux-gnu/libdl.so [ 89%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceVec4.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMCPU_EXPORTS -I/<>/platforms/cpu/src -I/<>/platforms/cpu/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -MD -MT platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceVec4.cpp.o -MF CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceVec4.cpp.o.d -o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceVec4.cpp.o -c /<>/platforms/cpu/src/CpuNonbondedForceVec4.cpp make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 89%] Built target OpenMMDrudeReference make -f plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeNoseHoover.dir/build.make plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeNoseHoover.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/plugins/drude/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests /<>/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeNoseHoover.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeNoseHoover.dir/build.make plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeNoseHoover.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 89%] Building CXX object plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeNoseHoover.dir/TestReferenceDrudeNoseHoover.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/platforms/reference/src -I/<>/platforms/reference/include -I/<>/plugins/drude/platforms/reference/src -I/<>/plugins/drude/platforms/reference/./include -I/<>/plugins/drude/src -I/<>/plugins/drude/serialization/include -I/<>/plugins/drude/openmmapi/include -I/<>/plugins/drude/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -I/<>/openmmapi/include/openmm -I/<>/platforms/reference/tests -I/<>/plugins/drude/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeNoseHoover.dir/TestReferenceDrudeNoseHoover.cpp.o -MF CMakeFiles/TestReferenceDrudeNoseHoover.dir/TestReferenceDrudeNoseHoover.cpp.o.d -o CMakeFiles/TestReferenceDrudeNoseHoover.dir/TestReferenceDrudeNoseHoover.cpp.o -c /<>/plugins/drude/platforms/reference/tests/TestReferenceDrudeNoseHoover.cpp [ 89%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceForce.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMAmoebaReference_EXPORTS -I/<>/platforms/reference/src/SimTKReference -I/<>/platforms/reference/src -I/<>/platforms/reference/include -I/<>/plugins/amoeba/platforms/reference/src/SimTKReference -I/<>/plugins/amoeba/platforms/reference/src -I/<>/plugins/amoeba/platforms/reference/./include -I/<>/plugins/amoeba/src -I/<>/plugins/amoeba/serialization/include -I/<>/plugins/amoeba/openmmapi/include -I/<>/plugins/amoeba/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceForce.cpp.o -MF CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceForce.cpp.o.d -o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceForce.cpp.o -c /<>/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceForce.cpp [ 91%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceGeneralizedKirkwoodForce.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMAmoebaReference_EXPORTS -I/<>/platforms/reference/src/SimTKReference -I/<>/platforms/reference/src -I/<>/platforms/reference/include -I/<>/plugins/amoeba/platforms/reference/src/SimTKReference -I/<>/plugins/amoeba/platforms/reference/src -I/<>/plugins/amoeba/platforms/reference/./include -I/<>/plugins/amoeba/src -I/<>/plugins/amoeba/serialization/include -I/<>/plugins/amoeba/openmmapi/include -I/<>/plugins/amoeba/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceGeneralizedKirkwoodForce.cpp.o -MF CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceGeneralizedKirkwoodForce.cpp.o.d -o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceGeneralizedKirkwoodForce.cpp.o -c /<>/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceGeneralizedKirkwoodForce.cpp [ 91%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceHippoNonbondedForce.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMAmoebaReference_EXPORTS -I/<>/platforms/reference/src/SimTKReference -I/<>/platforms/reference/src -I/<>/platforms/reference/include -I/<>/plugins/amoeba/platforms/reference/src/SimTKReference -I/<>/plugins/amoeba/platforms/reference/src -I/<>/plugins/amoeba/platforms/reference/./include -I/<>/plugins/amoeba/src -I/<>/plugins/amoeba/serialization/include -I/<>/plugins/amoeba/openmmapi/include -I/<>/plugins/amoeba/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceHippoNonbondedForce.cpp.o -MF CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceHippoNonbondedForce.cpp.o.d -o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceHippoNonbondedForce.cpp.o -c /<>/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceHippoNonbondedForce.cpp [ 93%] Linking CXX executable ../../../../../TestReferenceDrudeNoseHoover cd /<>/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceDrudeNoseHoover.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceDrudeNoseHoover.dir/TestReferenceDrudeNoseHoover.cpp.o -o ../../../../../TestReferenceDrudeNoseHoover -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../../../libOpenMMDrudeReference.so ../../../../../libOpenMMDrude.so ../../../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 93%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuPlatform.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMCPU_EXPORTS -I/<>/platforms/cpu/src -I/<>/platforms/cpu/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -MD -MT platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuPlatform.cpp.o -MF CMakeFiles/OpenMMCPU.dir/__/src/CpuPlatform.cpp.o.d -o CMakeFiles/OpenMMCPU.dir/__/src/CpuPlatform.cpp.o -c /<>/platforms/cpu/src/CpuPlatform.cpp make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 93%] Built target TestReferenceDrudeNoseHoover make -f plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/build.make plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/plugins/drude/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests /<>/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/build.make plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 93%] Building CXX object plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/TestReferenceDrudeLangevinIntegrator.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/platforms/reference/src -I/<>/platforms/reference/include -I/<>/plugins/drude/platforms/reference/src -I/<>/plugins/drude/platforms/reference/./include -I/<>/plugins/drude/src -I/<>/plugins/drude/serialization/include -I/<>/plugins/drude/openmmapi/include -I/<>/plugins/drude/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -I/<>/openmmapi/include/openmm -I/<>/platforms/reference/tests -I/<>/plugins/drude/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/TestReferenceDrudeLangevinIntegrator.cpp.o -MF CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/TestReferenceDrudeLangevinIntegrator.cpp.o.d -o CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/TestReferenceDrudeLangevinIntegrator.cpp.o -c /<>/plugins/drude/platforms/reference/tests/TestReferenceDrudeLangevinIntegrator.cpp [ 93%] Linking CXX executable ../../../../../TestReferenceRpmd cd /<>/obj-x86_64-linux-gnu/plugins/rpmd/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceRpmd.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceRpmd.dir/TestReferenceRpmd.cpp.o -o ../../../../../TestReferenceRpmd -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../../../libOpenMMRPMDReference.so ../../../../../libOpenMMRPMD.so ../../../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 93%] Built target TestReferenceRpmd make -f plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/build.make plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/plugins/drude/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests /<>/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/build.make plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 93%] Building CXX object plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/TestReferenceDrudeSCFIntegrator.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/platforms/reference/src -I/<>/platforms/reference/include -I/<>/plugins/drude/platforms/reference/src -I/<>/plugins/drude/platforms/reference/./include -I/<>/plugins/drude/src -I/<>/plugins/drude/serialization/include -I/<>/plugins/drude/openmmapi/include -I/<>/plugins/drude/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -I/<>/openmmapi/include/openmm -I/<>/platforms/reference/tests -I/<>/plugins/drude/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/TestReferenceDrudeSCFIntegrator.cpp.o -MF CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/TestReferenceDrudeSCFIntegrator.cpp.o.d -o CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/TestReferenceDrudeSCFIntegrator.cpp.o -c /<>/plugins/drude/platforms/reference/tests/TestReferenceDrudeSCFIntegrator.cpp [ 93%] Linking CXX executable ../../../../../TestReferenceDrudeSCFIntegrator cd /<>/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceDrudeSCFIntegrator.dir/TestReferenceDrudeSCFIntegrator.cpp.o -o ../../../../../TestReferenceDrudeSCFIntegrator -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../../../libOpenMMDrudeReference.so ../../../../../libOpenMMDrude.so ../../../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 93%] Built target TestReferenceDrudeSCFIntegrator make -f plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeForce.dir/build.make plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/plugins/drude/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests /<>/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeForce.dir/DependInfo.cmake --color= [ 93%] Linking CXX executable ../../../../../TestReferenceDrudeLangevinIntegrator cd /<>/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceDrudeLangevinIntegrator.dir/link.txt --verbose=1 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f 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plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeForce.dir/TestReferenceDrudeForce.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/platforms/reference/src -I/<>/platforms/reference/include -I/<>/plugins/drude/platforms/reference/src -I/<>/plugins/drude/platforms/reference/./include -I/<>/plugins/drude/src -I/<>/plugins/drude/serialization/include -I/<>/plugins/drude/openmmapi/include -I/<>/plugins/drude/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -I/<>/openmmapi/include/openmm -I/<>/platforms/reference/tests -I/<>/plugins/drude/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT plugins/drude/platforms/reference/tests/CMakeFiles/TestReferenceDrudeForce.dir/TestReferenceDrudeForce.cpp.o -MF CMakeFiles/TestReferenceDrudeForce.dir/TestReferenceDrudeForce.cpp.o.d -o CMakeFiles/TestReferenceDrudeForce.dir/TestReferenceDrudeForce.cpp.o -c /<>/plugins/drude/platforms/reference/tests/TestReferenceDrudeForce.cpp make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 93%] Built target TestReferenceDrudeLangevinIntegrator [ 93%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuRandom.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMCPU_EXPORTS -I/<>/platforms/cpu/src -I/<>/platforms/cpu/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -MD -MT platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuRandom.cpp.o -MF CMakeFiles/OpenMMCPU.dir/__/src/CpuRandom.cpp.o.d -o CMakeFiles/OpenMMCPU.dir/__/src/CpuRandom.cpp.o -c /<>/platforms/cpu/src/CpuRandom.cpp [ 93%] Building CXX object platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuSETTLE.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMCPU_EXPORTS -I/<>/platforms/cpu/src -I/<>/platforms/cpu/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_CPU_BUILDING_SHARED_LIBRARY -std=gnu++11 -msse2 -DLEPTON_USE_JIT -msse4.1 -MD -MT platforms/cpu/sharedTarget/CMakeFiles/OpenMMCPU.dir/__/src/CpuSETTLE.cpp.o -MF CMakeFiles/OpenMMCPU.dir/__/src/CpuSETTLE.cpp.o.d -o CMakeFiles/OpenMMCPU.dir/__/src/CpuSETTLE.cpp.o -c /<>/platforms/cpu/src/CpuSETTLE.cpp [ 93%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceMultipoleForce.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMAmoebaReference_EXPORTS -I/<>/platforms/reference/src/SimTKReference -I/<>/platforms/reference/src -I/<>/platforms/reference/include -I/<>/plugins/amoeba/platforms/reference/src/SimTKReference -I/<>/plugins/amoeba/platforms/reference/src -I/<>/plugins/amoeba/platforms/reference/./include -I/<>/plugins/amoeba/src -I/<>/plugins/amoeba/serialization/include -I/<>/plugins/amoeba/openmmapi/include -I/<>/plugins/amoeba/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceMultipoleForce.cpp.o -MF CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceMultipoleForce.cpp.o.d -o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceMultipoleForce.cpp.o -c /<>/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceMultipoleForce.cpp [ 93%] Linking CXX shared library ../../../libOpenMMCPU.so cd /<>/obj-x86_64-linux-gnu/platforms/cpu/sharedTarget && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMCPU.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt -Wl,-z,relro -Wl,--as-needed -Wl,-z,relro -Wl,--as-needed -shared -Wl,-soname,libOpenMMCPU.so -o ../../../libOpenMMCPU.so CMakeFiles/OpenMMCPU.dir/__/src/CpuBondForce.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomGBForce.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomManyParticleForce.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuCustomNonbondedForce.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuGBSAOBCForce.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuGayBerneForce.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuKernelFactory.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuKernels.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuLangevinDynamics.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuLangevinMiddleDynamics.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuNeighborList.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForce.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceAvx.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceAvx2.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceFvec.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuNonbondedForceVec4.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuPlatform.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuRandom.cpp.o CMakeFiles/OpenMMCPU.dir/__/src/CpuSETTLE.cpp.o -Wl,-rpath,/<>/obj-x86_64-linux-gnu: ../../../libOpenMM.so.7.6 -lpthread /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 93%] Linking CXX executable ../../../../../TestReferenceDrudeForce cd /<>/obj-x86_64-linux-gnu/plugins/drude/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceDrudeForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceDrudeForce.dir/TestReferenceDrudeForce.cpp.o -o ../../../../../TestReferenceDrudeForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../../../libOpenMMDrudeReference.so ../../../../../libOpenMMDrude.so ../../../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 93%] Built target OpenMMCPU make -f platforms/cpu/tests/CMakeFiles/TestCpuSettle.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuSettle.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/cpu/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/cpu/tests /<>/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuSettle.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuSettle.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuSettle.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 93%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuSettle.dir/TestCpuSettle.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/platforms/cpu/src -I/<>/platforms/cpu/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/cpu/tests/CMakeFiles/TestCpuSettle.dir/TestCpuSettle.cpp.o -MF CMakeFiles/TestCpuSettle.dir/TestCpuSettle.cpp.o.d -o CMakeFiles/TestCpuSettle.dir/TestCpuSettle.cpp.o -c /<>/platforms/cpu/tests/TestCpuSettle.cpp [ 93%] Built target TestReferenceDrudeForce make -f platforms/cpu/tests/CMakeFiles/TestCpuNonbondedForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuNonbondedForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/cpu/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/cpu/tests /<>/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuNonbondedForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuNonbondedForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuNonbondedForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 93%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuNonbondedForce.dir/TestCpuNonbondedForce.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/platforms/cpu/src -I/<>/platforms/cpu/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/cpu/tests/CMakeFiles/TestCpuNonbondedForce.dir/TestCpuNonbondedForce.cpp.o -MF CMakeFiles/TestCpuNonbondedForce.dir/TestCpuNonbondedForce.cpp.o.d -o CMakeFiles/TestCpuNonbondedForce.dir/TestCpuNonbondedForce.cpp.o -c /<>/platforms/cpu/tests/TestCpuNonbondedForce.cpp [ 93%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceTorsionTorsionForce.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMAmoebaReference_EXPORTS -I/<>/platforms/reference/src/SimTKReference -I/<>/platforms/reference/src -I/<>/platforms/reference/include -I/<>/plugins/amoeba/platforms/reference/src/SimTKReference -I/<>/plugins/amoeba/platforms/reference/src -I/<>/plugins/amoeba/platforms/reference/./include -I/<>/plugins/amoeba/src -I/<>/plugins/amoeba/serialization/include -I/<>/plugins/amoeba/openmmapi/include -I/<>/plugins/amoeba/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceTorsionTorsionForce.cpp.o -MF CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceTorsionTorsionForce.cpp.o.d -o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceTorsionTorsionForce.cpp.o -c /<>/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceTorsionTorsionForce.cpp [ 93%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceVdwForce.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMAmoebaReference_EXPORTS -I/<>/platforms/reference/src/SimTKReference -I/<>/platforms/reference/src -I/<>/platforms/reference/include -I/<>/plugins/amoeba/platforms/reference/src/SimTKReference -I/<>/plugins/amoeba/platforms/reference/src -I/<>/plugins/amoeba/platforms/reference/./include -I/<>/plugins/amoeba/src -I/<>/plugins/amoeba/serialization/include -I/<>/plugins/amoeba/openmmapi/include -I/<>/plugins/amoeba/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceVdwForce.cpp.o -MF CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceVdwForce.cpp.o.d -o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceVdwForce.cpp.o -c /<>/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceVdwForce.cpp [ 93%] Linking CXX executable ../../../TestCpuSettle cd /<>/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuSettle.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuSettle.dir/TestCpuSettle.cpp.o -o ../../../TestCpuSettle -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 93%] Built target TestCpuSettle make -f platforms/cpu/tests/CMakeFiles/TestCpuPeriodicTorsionForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuPeriodicTorsionForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/cpu/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/cpu/tests /<>/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuPeriodicTorsionForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuPeriodicTorsionForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuPeriodicTorsionForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 93%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuPeriodicTorsionForce.dir/TestCpuPeriodicTorsionForce.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/platforms/cpu/src -I/<>/platforms/cpu/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/cpu/tests/CMakeFiles/TestCpuPeriodicTorsionForce.dir/TestCpuPeriodicTorsionForce.cpp.o -MF CMakeFiles/TestCpuPeriodicTorsionForce.dir/TestCpuPeriodicTorsionForce.cpp.o.d -o CMakeFiles/TestCpuPeriodicTorsionForce.dir/TestCpuPeriodicTorsionForce.cpp.o -c /<>/platforms/cpu/tests/TestCpuPeriodicTorsionForce.cpp [ 93%] Linking CXX executable ../../../TestCpuPeriodicTorsionForce cd /<>/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuPeriodicTorsionForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuPeriodicTorsionForce.dir/TestCpuPeriodicTorsionForce.cpp.o -o ../../../TestCpuPeriodicTorsionForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 93%] Built target TestCpuPeriodicTorsionForce make -f platforms/cpu/tests/CMakeFiles/TestCpuCheckpoints.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCheckpoints.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/cpu/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/cpu/tests /<>/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCheckpoints.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuCheckpoints.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCheckpoints.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 93%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuCheckpoints.dir/TestCpuCheckpoints.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/platforms/cpu/src -I/<>/platforms/cpu/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/cpu/tests/CMakeFiles/TestCpuCheckpoints.dir/TestCpuCheckpoints.cpp.o -MF CMakeFiles/TestCpuCheckpoints.dir/TestCpuCheckpoints.cpp.o.d -o CMakeFiles/TestCpuCheckpoints.dir/TestCpuCheckpoints.cpp.o -c /<>/platforms/cpu/tests/TestCpuCheckpoints.cpp [ 93%] Building CXX object plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceWcaDispersionForce.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -DOpenMMAmoebaReference_EXPORTS -I/<>/platforms/reference/src/SimTKReference -I/<>/platforms/reference/src -I/<>/platforms/reference/include -I/<>/plugins/amoeba/platforms/reference/src/SimTKReference -I/<>/plugins/amoeba/platforms/reference/src -I/<>/plugins/amoeba/platforms/reference/./include -I/<>/plugins/amoeba/src -I/<>/plugins/amoeba/serialization/include -I/<>/plugins/amoeba/openmmapi/include -I/<>/plugins/amoeba/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse2 -DLEPTON_USE_JIT -DOPENMM_BUILDING_SHARED_LIBRARY -std=gnu++11 -MD -MT plugins/amoeba/platforms/reference/CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceWcaDispersionForce.cpp.o -MF CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceWcaDispersionForce.cpp.o.d -o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceWcaDispersionForce.cpp.o -c /<>/plugins/amoeba/platforms/reference/src/SimTKReference/AmoebaReferenceWcaDispersionForce.cpp make -f platforms/cpu/tests/CMakeFiles/TestCpuCompoundIntegrator.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCompoundIntegrator.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/cpu/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/cpu/tests 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-I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/cpu/tests/CMakeFiles/TestCpuCompoundIntegrator.dir/TestCpuCompoundIntegrator.cpp.o -MF CMakeFiles/TestCpuCompoundIntegrator.dir/TestCpuCompoundIntegrator.cpp.o.d -o CMakeFiles/TestCpuCompoundIntegrator.dir/TestCpuCompoundIntegrator.cpp.o -c /<>/platforms/cpu/tests/TestCpuCompoundIntegrator.cpp [ 95%] Linking CXX executable ../../../TestCpuNonbondedForce cd /<>/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuNonbondedForce.dir/link.txt --verbose=1 [ 95%] Linking CXX executable ../../../TestCpuCheckpoints cd /<>/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuCheckpoints.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuNonbondedForce.dir/TestCpuNonbondedForce.cpp.o -o ../../../TestCpuNonbondedForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuCheckpoints.dir/TestCpuCheckpoints.cpp.o -o ../../../TestCpuCheckpoints -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 95%] Built target TestCpuCheckpoints make -f platforms/cpu/tests/CMakeFiles/TestCpuCustomGBForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCustomGBForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/cpu/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/cpu/tests /<>/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCustomGBForce.dir/DependInfo.cmake --color= [ 95%] Built target TestCpuNonbondedForce make -f platforms/cpu/tests/CMakeFiles/TestCpuEwald.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuEwald.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/cpu/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/cpu/tests /<>/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuEwald.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuCustomGBForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCustomGBForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuEwald.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuEwald.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 95%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuCustomGBForce.dir/TestCpuCustomGBForce.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/platforms/cpu/src -I/<>/platforms/cpu/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/cpu/tests/CMakeFiles/TestCpuCustomGBForce.dir/TestCpuCustomGBForce.cpp.o -MF CMakeFiles/TestCpuCustomGBForce.dir/TestCpuCustomGBForce.cpp.o.d -o CMakeFiles/TestCpuCustomGBForce.dir/TestCpuCustomGBForce.cpp.o -c /<>/platforms/cpu/tests/TestCpuCustomGBForce.cpp [ 95%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuEwald.dir/TestCpuEwald.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/platforms/cpu/src -I/<>/platforms/cpu/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/cpu/tests/CMakeFiles/TestCpuEwald.dir/TestCpuEwald.cpp.o -MF CMakeFiles/TestCpuEwald.dir/TestCpuEwald.cpp.o.d -o CMakeFiles/TestCpuEwald.dir/TestCpuEwald.cpp.o -c /<>/platforms/cpu/tests/TestCpuEwald.cpp [ 95%] Linking CXX executable ../../../TestCpuCompoundIntegrator cd /<>/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuCompoundIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuCompoundIntegrator.dir/TestCpuCompoundIntegrator.cpp.o -o ../../../TestCpuCompoundIntegrator -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 95%] Built target TestCpuCompoundIntegrator make -f platforms/cpu/tests/CMakeFiles/TestCpuGayBerneForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuGayBerneForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/cpu/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/cpu/tests /<>/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuGayBerneForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuGayBerneForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuGayBerneForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 95%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuGayBerneForce.dir/TestCpuGayBerneForce.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/platforms/cpu/src -I/<>/platforms/cpu/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/cpu/tests/CMakeFiles/TestCpuGayBerneForce.dir/TestCpuGayBerneForce.cpp.o -MF CMakeFiles/TestCpuGayBerneForce.dir/TestCpuGayBerneForce.cpp.o.d -o CMakeFiles/TestCpuGayBerneForce.dir/TestCpuGayBerneForce.cpp.o -c /<>/platforms/cpu/tests/TestCpuGayBerneForce.cpp [ 95%] Linking CXX shared library ../../../../libOpenMMAmoebaReference.so cd /<>/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMAmoebaReference.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt -Wl,-z,relro -Wl,--as-needed -Wl,-z,relro -Wl,--as-needed -shared -Wl,-soname,libOpenMMAmoebaReference.so -o ../../../../libOpenMMAmoebaReference.so CMakeFiles/OpenMMAmoebaReference.dir/src/AmoebaReferenceKernelFactory.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/AmoebaReferenceKernels.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceForce.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceGeneralizedKirkwoodForce.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceHippoNonbondedForce.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceMultipoleForce.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceTorsionTorsionForce.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceVdwForce.cpp.o CMakeFiles/OpenMMAmoebaReference.dir/src/SimTKReference/AmoebaReferenceWcaDispersionForce.cpp.o -Wl,-rpath,/<>/obj-x86_64-linux-gnu: ../../../../libOpenMMAmoeba.so ../../../../libOpenMM.so.7.6 -lpthread /usr/lib/x86_64-linux-gnu/libdl.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 95%] Built target OpenMMAmoebaReference make -f platforms/cpu/tests/CMakeFiles/TestCpuHarmonicAngleForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuHarmonicAngleForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/cpu/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/cpu/tests /<>/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuHarmonicAngleForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuHarmonicAngleForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuHarmonicAngleForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 95%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuHarmonicAngleForce.dir/TestCpuHarmonicAngleForce.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/platforms/cpu/src -I/<>/platforms/cpu/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/cpu/tests/CMakeFiles/TestCpuHarmonicAngleForce.dir/TestCpuHarmonicAngleForce.cpp.o -MF CMakeFiles/TestCpuHarmonicAngleForce.dir/TestCpuHarmonicAngleForce.cpp.o.d -o CMakeFiles/TestCpuHarmonicAngleForce.dir/TestCpuHarmonicAngleForce.cpp.o -c /<>/platforms/cpu/tests/TestCpuHarmonicAngleForce.cpp [ 95%] Linking CXX executable ../../../TestCpuCustomGBForce cd /<>/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuCustomGBForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuCustomGBForce.dir/TestCpuCustomGBForce.cpp.o -o ../../../TestCpuCustomGBForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [ 95%] Linking CXX executable ../../../TestCpuGayBerneForce cd /<>/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuGayBerneForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuGayBerneForce.dir/TestCpuGayBerneForce.cpp.o -o ../../../TestCpuGayBerneForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 95%] Built target TestCpuCustomGBForce make -f platforms/cpu/tests/CMakeFiles/TestCpuDispersionPME.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuDispersionPME.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/cpu/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/cpu/tests /<>/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuDispersionPME.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuDispersionPME.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuDispersionPME.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 97%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuDispersionPME.dir/TestCpuDispersionPME.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/platforms/cpu/src -I/<>/platforms/cpu/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/cpu/tests/CMakeFiles/TestCpuDispersionPME.dir/TestCpuDispersionPME.cpp.o -MF CMakeFiles/TestCpuDispersionPME.dir/TestCpuDispersionPME.cpp.o.d -o CMakeFiles/TestCpuDispersionPME.dir/TestCpuDispersionPME.cpp.o -c /<>/platforms/cpu/tests/TestCpuDispersionPME.cpp make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 97%] Built target TestCpuGayBerneForce make -f platforms/cpu/tests/CMakeFiles/TestCpuLangevinIntegrator.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuLangevinIntegrator.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/cpu/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/cpu/tests /<>/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuLangevinIntegrator.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuLangevinIntegrator.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuLangevinIntegrator.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 97%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuLangevinIntegrator.dir/TestCpuLangevinIntegrator.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/platforms/cpu/src -I/<>/platforms/cpu/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/cpu/tests/CMakeFiles/TestCpuLangevinIntegrator.dir/TestCpuLangevinIntegrator.cpp.o -MF CMakeFiles/TestCpuLangevinIntegrator.dir/TestCpuLangevinIntegrator.cpp.o.d -o CMakeFiles/TestCpuLangevinIntegrator.dir/TestCpuLangevinIntegrator.cpp.o -c /<>/platforms/cpu/tests/TestCpuLangevinIntegrator.cpp [ 97%] Linking CXX executable ../../../TestCpuHarmonicAngleForce cd /<>/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuHarmonicAngleForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuHarmonicAngleForce.dir/TestCpuHarmonicAngleForce.cpp.o -o ../../../TestCpuHarmonicAngleForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 97%] Built target TestCpuHarmonicAngleForce make -f platforms/cpu/tests/CMakeFiles/TestCpuRBTorsionForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuRBTorsionForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/cpu/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/cpu/tests /<>/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuRBTorsionForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuRBTorsionForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuRBTorsionForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 97%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuRBTorsionForce.dir/TestCpuRBTorsionForce.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/platforms/cpu/src -I/<>/platforms/cpu/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/cpu/tests/CMakeFiles/TestCpuRBTorsionForce.dir/TestCpuRBTorsionForce.cpp.o -MF CMakeFiles/TestCpuRBTorsionForce.dir/TestCpuRBTorsionForce.cpp.o.d -o CMakeFiles/TestCpuRBTorsionForce.dir/TestCpuRBTorsionForce.cpp.o -c /<>/platforms/cpu/tests/TestCpuRBTorsionForce.cpp [ 97%] Linking CXX executable ../../../TestCpuLangevinIntegrator cd /<>/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuLangevinIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuLangevinIntegrator.dir/TestCpuLangevinIntegrator.cpp.o -o ../../../TestCpuLangevinIntegrator -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 97%] Built target TestCpuLangevinIntegrator make -f platforms/cpu/tests/CMakeFiles/TestCpuCustomManyParticleForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCustomManyParticleForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/cpu/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/cpu/tests /<>/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCustomManyParticleForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuCustomManyParticleForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCustomManyParticleForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 97%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuCustomManyParticleForce.dir/TestCpuCustomManyParticleForce.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/platforms/cpu/src -I/<>/platforms/cpu/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/cpu/tests/CMakeFiles/TestCpuCustomManyParticleForce.dir/TestCpuCustomManyParticleForce.cpp.o -MF CMakeFiles/TestCpuCustomManyParticleForce.dir/TestCpuCustomManyParticleForce.cpp.o.d -o CMakeFiles/TestCpuCustomManyParticleForce.dir/TestCpuCustomManyParticleForce.cpp.o -c /<>/platforms/cpu/tests/TestCpuCustomManyParticleForce.cpp [ 97%] Linking CXX executable ../../../TestCpuEwald cd /<>/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuEwald.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuEwald.dir/TestCpuEwald.cpp.o -o ../../../TestCpuEwald -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 97%] Built target TestCpuEwald make -f platforms/cpu/tests/CMakeFiles/TestCpuCustomNonbondedForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCustomNonbondedForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/cpu/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/cpu/tests /<>/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuCustomNonbondedForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuCustomNonbondedForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuCustomNonbondedForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 97%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuCustomNonbondedForce.dir/TestCpuCustomNonbondedForce.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/platforms/cpu/src -I/<>/platforms/cpu/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/cpu/tests/CMakeFiles/TestCpuCustomNonbondedForce.dir/TestCpuCustomNonbondedForce.cpp.o -MF CMakeFiles/TestCpuCustomNonbondedForce.dir/TestCpuCustomNonbondedForce.cpp.o.d -o CMakeFiles/TestCpuCustomNonbondedForce.dir/TestCpuCustomNonbondedForce.cpp.o -c /<>/platforms/cpu/tests/TestCpuCustomNonbondedForce.cpp [ 97%] Linking CXX executable ../../../TestCpuRBTorsionForce cd /<>/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuRBTorsionForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuRBTorsionForce.dir/TestCpuRBTorsionForce.cpp.o -o ../../../TestCpuRBTorsionForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 97%] Built target TestCpuRBTorsionForce make -f platforms/cpu/tests/CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/cpu/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/cpu/tests /<>/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 97%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/TestCpuLangevinMiddleIntegrator.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/platforms/cpu/src -I/<>/platforms/cpu/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/cpu/tests/CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/TestCpuLangevinMiddleIntegrator.cpp.o -MF CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/TestCpuLangevinMiddleIntegrator.cpp.o.d -o CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/TestCpuLangevinMiddleIntegrator.cpp.o -c /<>/platforms/cpu/tests/TestCpuLangevinMiddleIntegrator.cpp [ 97%] Linking CXX executable ../../../TestCpuDispersionPME cd /<>/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuDispersionPME.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuDispersionPME.dir/TestCpuDispersionPME.cpp.o -o ../../../TestCpuDispersionPME -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 97%] Built target TestCpuDispersionPME make -f platforms/cpu/tests/CMakeFiles/TestCpuGBSAOBCForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuGBSAOBCForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/cpu/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/cpu/tests /<>/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuGBSAOBCForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuGBSAOBCForce.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuGBSAOBCForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 97%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuGBSAOBCForce.dir/TestCpuGBSAOBCForce.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/platforms/cpu/src -I/<>/platforms/cpu/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/cpu/tests/CMakeFiles/TestCpuGBSAOBCForce.dir/TestCpuGBSAOBCForce.cpp.o -MF CMakeFiles/TestCpuGBSAOBCForce.dir/TestCpuGBSAOBCForce.cpp.o.d -o CMakeFiles/TestCpuGBSAOBCForce.dir/TestCpuGBSAOBCForce.cpp.o -c /<>/platforms/cpu/tests/TestCpuGBSAOBCForce.cpp [ 97%] Linking CXX executable ../../../TestCpuLangevinMiddleIntegrator cd /<>/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuLangevinMiddleIntegrator.dir/TestCpuLangevinMiddleIntegrator.cpp.o -o ../../../TestCpuLangevinMiddleIntegrator -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 97%] Built target TestCpuLangevinMiddleIntegrator make -f platforms/cpu/tests/CMakeFiles/TestCpuNeighborList.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuNeighborList.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/platforms/cpu/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/platforms/cpu/tests /<>/obj-x86_64-linux-gnu/platforms/cpu/tests/CMakeFiles/TestCpuNeighborList.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f platforms/cpu/tests/CMakeFiles/TestCpuNeighborList.dir/build.make platforms/cpu/tests/CMakeFiles/TestCpuNeighborList.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 97%] Building CXX object platforms/cpu/tests/CMakeFiles/TestCpuNeighborList.dir/TestCpuNeighborList.cpp.o cd /<>/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/c++ -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/platforms/cpu/src -I/<>/platforms/cpu/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/platforms/reference/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT platforms/cpu/tests/CMakeFiles/TestCpuNeighborList.dir/TestCpuNeighborList.cpp.o -MF CMakeFiles/TestCpuNeighborList.dir/TestCpuNeighborList.cpp.o.d -o CMakeFiles/TestCpuNeighborList.dir/TestCpuNeighborList.cpp.o -c /<>/platforms/cpu/tests/TestCpuNeighborList.cpp [ 97%] Linking CXX executable ../../../TestCpuCustomManyParticleForce cd /<>/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuCustomManyParticleForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuCustomManyParticleForce.dir/TestCpuCustomManyParticleForce.cpp.o -o ../../../TestCpuCustomManyParticleForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 97%] Built target TestCpuCustomManyParticleForce make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/plugins/amoeba/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /<>/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [100%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/TestReferenceAmoebaGeneralizedKirkwoodForce.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/platforms/reference/src/SimTKReference -I/<>/platforms/reference/src -I/<>/platforms/reference/include -I/<>/plugins/amoeba/platforms/reference/src/SimTKReference -I/<>/plugins/amoeba/platforms/reference/src -I/<>/plugins/amoeba/platforms/reference/./include -I/<>/plugins/amoeba/src -I/<>/plugins/amoeba/serialization/include -I/<>/plugins/amoeba/openmmapi/include -I/<>/plugins/amoeba/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -I/<>/plugins/amoeba/tests -I/<>/platforms/reference/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/TestReferenceAmoebaGeneralizedKirkwoodForce.cpp.o -MF CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/TestReferenceAmoebaGeneralizedKirkwoodForce.cpp.o.d -o CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/TestReferenceAmoebaGeneralizedKirkwoodForce.cpp.o -c /<>/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaGeneralizedKirkwoodForce.cpp [100%] Linking CXX executable ../../../TestCpuGBSAOBCForce cd /<>/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuGBSAOBCForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuGBSAOBCForce.dir/TestCpuGBSAOBCForce.cpp.o -o ../../../TestCpuGBSAOBCForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target TestCpuGBSAOBCForce make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/plugins/amoeba/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /<>/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [100%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/TestReferenceAmoebaMultipoleForce.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/platforms/reference/src/SimTKReference -I/<>/platforms/reference/src -I/<>/platforms/reference/include -I/<>/plugins/amoeba/platforms/reference/src/SimTKReference -I/<>/plugins/amoeba/platforms/reference/src -I/<>/plugins/amoeba/platforms/reference/./include -I/<>/plugins/amoeba/src -I/<>/plugins/amoeba/serialization/include -I/<>/plugins/amoeba/openmmapi/include -I/<>/plugins/amoeba/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -I/<>/plugins/amoeba/tests -I/<>/platforms/reference/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/TestReferenceAmoebaMultipoleForce.cpp.o -MF CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/TestReferenceAmoebaMultipoleForce.cpp.o.d -o CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/TestReferenceAmoebaMultipoleForce.cpp.o -c /<>/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaMultipoleForce.cpp [100%] Linking CXX executable ../../../TestCpuNeighborList cd /<>/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuNeighborList.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuNeighborList.dir/TestCpuNeighborList.cpp.o -o ../../../TestCpuNeighborList -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target TestCpuNeighborList make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/plugins/amoeba/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /<>/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [100%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/TestReferenceAmoebaTorsionTorsionForce.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/platforms/reference/src/SimTKReference -I/<>/platforms/reference/src -I/<>/platforms/reference/include -I/<>/plugins/amoeba/platforms/reference/src/SimTKReference -I/<>/plugins/amoeba/platforms/reference/src -I/<>/plugins/amoeba/platforms/reference/./include -I/<>/plugins/amoeba/src -I/<>/plugins/amoeba/serialization/include -I/<>/plugins/amoeba/openmmapi/include -I/<>/plugins/amoeba/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -I/<>/plugins/amoeba/tests -I/<>/platforms/reference/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/TestReferenceAmoebaTorsionTorsionForce.cpp.o -MF CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/TestReferenceAmoebaTorsionTorsionForce.cpp.o.d -o CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/TestReferenceAmoebaTorsionTorsionForce.cpp.o -c /<>/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaTorsionTorsionForce.cpp [100%] Linking CXX executable ../../../../../TestReferenceAmoebaGeneralizedKirkwoodForce cd /<>/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaGeneralizedKirkwoodForce.dir/TestReferenceAmoebaGeneralizedKirkwoodForce.cpp.o -o ../../../../../TestReferenceAmoebaGeneralizedKirkwoodForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target TestReferenceAmoebaGeneralizedKirkwoodForce make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaVdwForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaVdwForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/plugins/amoeba/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /<>/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaVdwForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaVdwForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaVdwForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [100%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaVdwForce.dir/TestReferenceAmoebaVdwForce.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/platforms/reference/src/SimTKReference -I/<>/platforms/reference/src -I/<>/platforms/reference/include -I/<>/plugins/amoeba/platforms/reference/src/SimTKReference -I/<>/plugins/amoeba/platforms/reference/src -I/<>/plugins/amoeba/platforms/reference/./include -I/<>/plugins/amoeba/src -I/<>/plugins/amoeba/serialization/include -I/<>/plugins/amoeba/openmmapi/include -I/<>/plugins/amoeba/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -I/<>/plugins/amoeba/tests -I/<>/platforms/reference/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaVdwForce.dir/TestReferenceAmoebaVdwForce.cpp.o -MF CMakeFiles/TestReferenceAmoebaVdwForce.dir/TestReferenceAmoebaVdwForce.cpp.o.d -o CMakeFiles/TestReferenceAmoebaVdwForce.dir/TestReferenceAmoebaVdwForce.cpp.o -c /<>/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaVdwForce.cpp [100%] Linking CXX executable ../../../../../TestReferenceAmoebaTorsionTorsionForce cd /<>/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaTorsionTorsionForce.dir/TestReferenceAmoebaTorsionTorsionForce.cpp.o -o ../../../../../TestReferenceAmoebaTorsionTorsionForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target TestReferenceAmoebaTorsionTorsionForce make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceHippoNonbondedForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceHippoNonbondedForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/plugins/amoeba/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /<>/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceHippoNonbondedForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceHippoNonbondedForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceHippoNonbondedForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [100%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceHippoNonbondedForce.dir/TestReferenceHippoNonbondedForce.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/platforms/reference/src/SimTKReference -I/<>/platforms/reference/src -I/<>/platforms/reference/include -I/<>/plugins/amoeba/platforms/reference/src/SimTKReference -I/<>/plugins/amoeba/platforms/reference/src -I/<>/plugins/amoeba/platforms/reference/./include -I/<>/plugins/amoeba/src -I/<>/plugins/amoeba/serialization/include -I/<>/plugins/amoeba/openmmapi/include -I/<>/plugins/amoeba/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -I/<>/plugins/amoeba/tests -I/<>/platforms/reference/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceHippoNonbondedForce.dir/TestReferenceHippoNonbondedForce.cpp.o -MF CMakeFiles/TestReferenceHippoNonbondedForce.dir/TestReferenceHippoNonbondedForce.cpp.o.d -o CMakeFiles/TestReferenceHippoNonbondedForce.dir/TestReferenceHippoNonbondedForce.cpp.o -c /<>/plugins/amoeba/platforms/reference/tests/TestReferenceHippoNonbondedForce.cpp [100%] Linking CXX executable ../../../TestCpuCustomNonbondedForce cd /<>/obj-x86_64-linux-gnu/platforms/cpu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCpuCustomNonbondedForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestCpuCustomNonbondedForce.dir/TestCpuCustomNonbondedForce.cpp.o -o ../../../TestCpuCustomNonbondedForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../libOpenMMCPU.so ../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target TestCpuCustomNonbondedForce make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceWcaDispersionForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceWcaDispersionForce.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/plugins/amoeba/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /<>/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceWcaDispersionForce.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceWcaDispersionForce.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceWcaDispersionForce.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [100%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceWcaDispersionForce.dir/TestReferenceWcaDispersionForce.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/platforms/reference/src/SimTKReference -I/<>/platforms/reference/src -I/<>/platforms/reference/include -I/<>/plugins/amoeba/platforms/reference/src/SimTKReference -I/<>/plugins/amoeba/platforms/reference/src -I/<>/plugins/amoeba/platforms/reference/./include -I/<>/plugins/amoeba/src -I/<>/plugins/amoeba/serialization/include -I/<>/plugins/amoeba/openmmapi/include -I/<>/plugins/amoeba/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -I/<>/plugins/amoeba/tests -I/<>/platforms/reference/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceWcaDispersionForce.dir/TestReferenceWcaDispersionForce.cpp.o -MF CMakeFiles/TestReferenceWcaDispersionForce.dir/TestReferenceWcaDispersionForce.cpp.o.d -o CMakeFiles/TestReferenceWcaDispersionForce.dir/TestReferenceWcaDispersionForce.cpp.o -c /<>/plugins/amoeba/platforms/reference/tests/TestReferenceWcaDispersionForce.cpp [100%] Linking CXX executable ../../../../../TestReferenceWcaDispersionForce cd /<>/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceWcaDispersionForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceWcaDispersionForce.dir/TestReferenceWcaDispersionForce.cpp.o -o ../../../../../TestReferenceWcaDispersionForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target TestReferenceWcaDispersionForce make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/plugins/amoeba/platforms/reference/tests /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests /<>/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/build.make plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [100%] Building CXX object plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/TestReferenceAmoebaExtrapolatedPolarization.cpp.o cd /<>/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/c++ -DOPENMM_AMOEBA_BUILD_VERSION=0 -DOPENMM_AMOEBA_LIBRARY_NAME=OpenMMAmoeba -DOPENMM_AMOEBA_MAJOR_VERSION=1 -DOPENMM_AMOEBA_MINOR_VERSION=0 -DOPENMM_BUILD_VERSION=0 -DOPENMM_LIBRARY_NAME=OpenMM -DOPENMM_MAJOR_VERSION=7 -DOPENMM_MINOR_VERSION=6 -I/<>/platforms/reference/src/SimTKReference -I/<>/platforms/reference/src -I/<>/platforms/reference/include -I/<>/plugins/amoeba/platforms/reference/src/SimTKReference -I/<>/plugins/amoeba/platforms/reference/src -I/<>/plugins/amoeba/platforms/reference/./include -I/<>/plugins/amoeba/src -I/<>/plugins/amoeba/serialization/include -I/<>/plugins/amoeba/openmmapi/include -I/<>/plugins/amoeba/./include -I/<>/src -I/<>/libraries/asmjit -I/<>/libraries/vecmath/include -I/<>/libraries/irrxml/include -I/<>/serialization/include -I/<>/libraries/csha1/include -I/<>/libraries/hilbert/include -I/<>/libraries/lbfgs/include -I/<>/libraries/sfmt/include -I/<>/libraries/lepton/include -I/<>/libraries/quern/include -I/<>/libraries/jama/include -I/<>/olla/include -I/<>/openmmapi/include -I/<>/./include -I/<>/tests -I/<>/plugins/amoeba/tests -I/<>/platforms/reference/tests -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -DLEPTON_USE_JIT -std=gnu++11 -MD -MT plugins/amoeba/platforms/reference/tests/CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/TestReferenceAmoebaExtrapolatedPolarization.cpp.o -MF CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/TestReferenceAmoebaExtrapolatedPolarization.cpp.o.d -o CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/TestReferenceAmoebaExtrapolatedPolarization.cpp.o -c /<>/plugins/amoeba/platforms/reference/tests/TestReferenceAmoebaExtrapolatedPolarization.cpp [100%] Linking CXX executable ../../../../../TestReferenceHippoNonbondedForce cd /<>/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceHippoNonbondedForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceHippoNonbondedForce.dir/TestReferenceHippoNonbondedForce.cpp.o -o ../../../../../TestReferenceHippoNonbondedForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target TestReferenceHippoNonbondedForce [100%] Linking CXX executable ../../../../../TestReferenceAmoebaMultipoleForce cd /<>/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaMultipoleForce.dir/TestReferenceAmoebaMultipoleForce.cpp.o -o ../../../../../TestReferenceAmoebaMultipoleForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target TestReferenceAmoebaMultipoleForce [100%] Linking CXX executable ../../../../../TestReferenceAmoebaVdwForce cd /<>/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaVdwForce.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaVdwForce.dir/TestReferenceAmoebaVdwForce.cpp.o -o ../../../../../TestReferenceAmoebaVdwForce -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread [100%] Linking CXX executable ../../../../../TestReferenceAmoebaExtrapolatedPolarization cd /<>/obj-x86_64-linux-gnu/plugins/amoeba/platforms/reference/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -msse2 -DLEPTON_USE_JIT -Wl,--no-as-needed -lrt CMakeFiles/TestReferenceAmoebaExtrapolatedPolarization.dir/TestReferenceAmoebaExtrapolatedPolarization.cpp.o -o ../../../../../TestReferenceAmoebaExtrapolatedPolarization -Wl,-rpath,/<>/obj-x86_64-linux-gnu ../../../../../libOpenMMAmoebaReference.so ../../../../../libOpenMMAmoeba.so ../../../../../libOpenMM.so.7.6 /usr/lib/x86_64-linux-gnu/libdl.so -lpthread make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target TestReferenceAmoebaVdwForce make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target TestReferenceAmoebaExtrapolatedPolarization make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd obj-*/python && python3 setup.py build Compiling openmm/app/internal/compiled.pyx because it changed. [1/1] Cythonizing openmm/app/internal/compiled.pyx author Peter Eastman data_files [] description Python wrapper for OpenMM (a C++ MD package) download_url https://openmm.org ext_modules[, ] license Python Software Foundation License (BSD-like) long_descriptionOpenMM is a toolkit for molecular simulation. It can be used either as a stand-alone application for running simulations, or as a library you call from your own code. It provides a combination of extreme flexibility (through custom forces and integrators), openness, and high performance (especially on recent GPUs) that make it truly unique among simulation codes. name OpenMM package_data{'openmm': [], 'openmm.app': ['data/*.xml', 'data/*.pdb', 'data/amber14/*.xml', 'data/charmm36/*.xml'], 'openmm.app.internal': []} packages['simtk', 'simtk.unit', 'simtk.openmm', 'simtk.openmm.app', 'openmm', 'openmm.unit', 'openmm', 'openmm.app', 'openmm.app.internal', 'openmm.app.internal.charmm', 'openmm.app.internal.pdbx', 'openmm.app.internal.pdbx.reader', 'openmm.app.internal.pdbx.writer'] platforms ['Linux', 'Mac OS X', 'Windows'] url https://openmm.org version 7.6.0 running build running build_py creating build creating build/lib.linux-x86_64-3.9 creating build/lib.linux-x86_64-3.9/simtk copying simtk/__init__.py -> build/lib.linux-x86_64-3.9/simtk creating build/lib.linux-x86_64-3.9/simtk/unit copying simtk/unit/__init__.py -> build/lib.linux-x86_64-3.9/simtk/unit creating build/lib.linux-x86_64-3.9/simtk/openmm copying simtk/openmm/__init__.py -> build/lib.linux-x86_64-3.9/simtk/openmm creating build/lib.linux-x86_64-3.9/simtk/openmm/app copying simtk/openmm/app/__init__.py -> build/lib.linux-x86_64-3.9/simtk/openmm/app creating build/lib.linux-x86_64-3.9/openmm copying openmm/vec3.py -> build/lib.linux-x86_64-3.9/openmm copying openmm/testInstallation.py -> build/lib.linux-x86_64-3.9/openmm copying openmm/__init__.py -> build/lib.linux-x86_64-3.9/openmm copying openmm/openmm.py -> build/lib.linux-x86_64-3.9/openmm copying openmm/mtsintegrator.py -> build/lib.linux-x86_64-3.9/openmm copying openmm/amd.py -> build/lib.linux-x86_64-3.9/openmm copying openmm/version.py -> build/lib.linux-x86_64-3.9/openmm creating build/lib.linux-x86_64-3.9/openmm/unit copying openmm/unit/__init__.py -> build/lib.linux-x86_64-3.9/openmm/unit copying openmm/unit/unit_definitions.py -> build/lib.linux-x86_64-3.9/openmm/unit copying openmm/unit/standard_dimensions.py -> build/lib.linux-x86_64-3.9/openmm/unit copying openmm/unit/unit.py -> build/lib.linux-x86_64-3.9/openmm/unit copying openmm/unit/mymatrix.py -> build/lib.linux-x86_64-3.9/openmm/unit copying openmm/unit/doctests.py -> build/lib.linux-x86_64-3.9/openmm/unit copying openmm/unit/unit_operators.py -> build/lib.linux-x86_64-3.9/openmm/unit copying openmm/unit/quantity.py -> build/lib.linux-x86_64-3.9/openmm/unit copying openmm/unit/constants.py -> build/lib.linux-x86_64-3.9/openmm/unit copying openmm/unit/basedimension.py -> build/lib.linux-x86_64-3.9/openmm/unit copying openmm/unit/prefix.py -> build/lib.linux-x86_64-3.9/openmm/unit copying openmm/unit/unit_math.py -> build/lib.linux-x86_64-3.9/openmm/unit copying openmm/unit/baseunit.py -> build/lib.linux-x86_64-3.9/openmm/unit creating build/lib.linux-x86_64-3.9/openmm/app copying openmm/app/forcefield.py -> build/lib.linux-x86_64-3.9/openmm/app copying openmm/app/metadynamics.py -> build/lib.linux-x86_64-3.9/openmm/app copying openmm/app/__init__.py -> build/lib.linux-x86_64-3.9/openmm/app copying openmm/app/pdbxfile.py -> build/lib.linux-x86_64-3.9/openmm/app copying openmm/app/simulatedtempering.py -> build/lib.linux-x86_64-3.9/openmm/app copying openmm/app/checkpointreporter.py -> build/lib.linux-x86_64-3.9/openmm/app copying openmm/app/desmonddmsfile.py -> build/lib.linux-x86_64-3.9/openmm/app copying openmm/app/dcdfile.py -> build/lib.linux-x86_64-3.9/openmm/app copying openmm/app/pdbfile.py -> build/lib.linux-x86_64-3.9/openmm/app copying openmm/app/charmmparameterset.py -> build/lib.linux-x86_64-3.9/openmm/app copying openmm/app/modeller.py -> build/lib.linux-x86_64-3.9/openmm/app copying openmm/app/pdbreporter.py -> build/lib.linux-x86_64-3.9/openmm/app copying openmm/app/dcdreporter.py -> build/lib.linux-x86_64-3.9/openmm/app copying openmm/app/simulation.py -> build/lib.linux-x86_64-3.9/openmm/app copying openmm/app/amberprmtopfile.py -> build/lib.linux-x86_64-3.9/openmm/app copying openmm/app/gromacstopfile.py -> build/lib.linux-x86_64-3.9/openmm/app copying openmm/app/amberinpcrdfile.py -> build/lib.linux-x86_64-3.9/openmm/app copying openmm/app/charmmpsffile.py -> build/lib.linux-x86_64-3.9/openmm/app copying openmm/app/gromacsgrofile.py -> build/lib.linux-x86_64-3.9/openmm/app copying openmm/app/element.py -> build/lib.linux-x86_64-3.9/openmm/app copying openmm/app/charmmcrdfiles.py -> build/lib.linux-x86_64-3.9/openmm/app copying openmm/app/statedatareporter.py -> build/lib.linux-x86_64-3.9/openmm/app copying openmm/app/topology.py -> build/lib.linux-x86_64-3.9/openmm/app creating build/lib.linux-x86_64-3.9/openmm/app/internal copying openmm/app/internal/unitcell.py -> build/lib.linux-x86_64-3.9/openmm/app/internal copying openmm/app/internal/__init__.py -> build/lib.linux-x86_64-3.9/openmm/app/internal copying openmm/app/internal/pdbstructure.py -> build/lib.linux-x86_64-3.9/openmm/app/internal copying openmm/app/internal/singleton.py -> build/lib.linux-x86_64-3.9/openmm/app/internal copying openmm/app/internal/amber_file_parser.py -> build/lib.linux-x86_64-3.9/openmm/app/internal copying openmm/app/internal/customgbforces.py -> build/lib.linux-x86_64-3.9/openmm/app/internal creating build/lib.linux-x86_64-3.9/openmm/app/internal/charmm copying openmm/app/internal/charmm/__init__.py -> build/lib.linux-x86_64-3.9/openmm/app/internal/charmm copying openmm/app/internal/charmm/topologyobjects.py -> build/lib.linux-x86_64-3.9/openmm/app/internal/charmm copying openmm/app/internal/charmm/exceptions.py -> build/lib.linux-x86_64-3.9/openmm/app/internal/charmm copying openmm/app/internal/charmm/_charmmfile.py -> build/lib.linux-x86_64-3.9/openmm/app/internal/charmm creating build/lib.linux-x86_64-3.9/openmm/app/internal/pdbx copying openmm/app/internal/pdbx/__init__.py -> build/lib.linux-x86_64-3.9/openmm/app/internal/pdbx creating build/lib.linux-x86_64-3.9/openmm/app/internal/pdbx/reader copying openmm/app/internal/pdbx/reader/PdbxReadWriteTests.py -> build/lib.linux-x86_64-3.9/openmm/app/internal/pdbx/reader copying openmm/app/internal/pdbx/reader/__init__.py -> build/lib.linux-x86_64-3.9/openmm/app/internal/pdbx/reader copying openmm/app/internal/pdbx/reader/PdbxReader.py -> build/lib.linux-x86_64-3.9/openmm/app/internal/pdbx/reader copying openmm/app/internal/pdbx/reader/PdbxContainers.py -> build/lib.linux-x86_64-3.9/openmm/app/internal/pdbx/reader copying openmm/app/internal/pdbx/reader/PdbxReaderTests.py -> build/lib.linux-x86_64-3.9/openmm/app/internal/pdbx/reader copying openmm/app/internal/pdbx/reader/PdbxParser.py -> build/lib.linux-x86_64-3.9/openmm/app/internal/pdbx/reader creating build/lib.linux-x86_64-3.9/openmm/app/internal/pdbx/writer copying openmm/app/internal/pdbx/writer/PdbxWriter.py -> build/lib.linux-x86_64-3.9/openmm/app/internal/pdbx/writer copying openmm/app/internal/pdbx/writer/__init__.py -> build/lib.linux-x86_64-3.9/openmm/app/internal/pdbx/writer copying openmm/app/internal/pdbx/writer/PdbxWriterTests.py -> build/lib.linux-x86_64-3.9/openmm/app/internal/pdbx/writer creating build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/amber03_obc.xml -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/amoeba2009_gk.xml -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/amber99sbildn.xml -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/amber99_obc.xml -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/charmm_polar_2013.xml -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/amber10_obc.xml -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/amber10.xml -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/tip5p.xml -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/amber03.xml -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/charmm36.xml -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/tip3pfb.xml -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/amber96_obc.xml -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/amoeba2009.xml -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/amber99Test.xml -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/residues.xml -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/tip4pfb.xml -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/amoeba2013.xml -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/amber14-all.xml -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/tip4pew.xml -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/spce.xml -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/charmm_polar_2019.xml -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/amber99sb.xml -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/amberfb15.xml -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/amber99sbnmr.xml -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/iamoeba.xml -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/tip3p.xml -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/absinth.xml -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/hydrogens.xml -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/amber96.xml -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/swm4ndp.xml -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/pdbNames.xml -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/amoeba2013_gk.xml -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/tip5p.pdb -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/DPPC.pdb -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/DLPE.pdb -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/POPC.pdb -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/POPE.pdb -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/spce.pdb -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/DLPC.pdb -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/test.pdb -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/DOPC.pdb -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/DMPC.pdb -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/tip4pew.pdb -> build/lib.linux-x86_64-3.9/openmm/app/data copying openmm/app/data/tip3p.pdb -> build/lib.linux-x86_64-3.9/openmm/app/data creating build/lib.linux-x86_64-3.9/openmm/app/data/amber14 copying openmm/app/data/amber14/lipid17.xml -> build/lib.linux-x86_64-3.9/openmm/app/data/amber14 copying openmm/app/data/amber14/DNA.OL15.xml -> build/lib.linux-x86_64-3.9/openmm/app/data/amber14 copying openmm/app/data/amber14/tip3pfb.xml -> build/lib.linux-x86_64-3.9/openmm/app/data/amber14 copying openmm/app/data/amber14/protein.ff15ipq.xml -> build/lib.linux-x86_64-3.9/openmm/app/data/amber14 copying openmm/app/data/amber14/tip4pfb.xml -> build/lib.linux-x86_64-3.9/openmm/app/data/amber14 copying openmm/app/data/amber14/tip4pew.xml -> build/lib.linux-x86_64-3.9/openmm/app/data/amber14 copying openmm/app/data/amber14/spce.xml -> build/lib.linux-x86_64-3.9/openmm/app/data/amber14 copying openmm/app/data/amber14/protein.ff14SB.xml -> build/lib.linux-x86_64-3.9/openmm/app/data/amber14 copying openmm/app/data/amber14/DNA.bsc1.xml -> build/lib.linux-x86_64-3.9/openmm/app/data/amber14 copying openmm/app/data/amber14/tip3p.xml -> build/lib.linux-x86_64-3.9/openmm/app/data/amber14 copying openmm/app/data/amber14/RNA.OL3.xml -> build/lib.linux-x86_64-3.9/openmm/app/data/amber14 creating build/lib.linux-x86_64-3.9/openmm/app/data/charmm36 copying openmm/app/data/charmm36/tip4p2005.xml -> build/lib.linux-x86_64-3.9/openmm/app/data/charmm36 copying openmm/app/data/charmm36/water.xml -> build/lib.linux-x86_64-3.9/openmm/app/data/charmm36 copying openmm/app/data/charmm36/tip3p-pme-f.xml -> build/lib.linux-x86_64-3.9/openmm/app/data/charmm36 copying openmm/app/data/charmm36/tip5p.xml -> build/lib.linux-x86_64-3.9/openmm/app/data/charmm36 copying openmm/app/data/charmm36/tip3p-pme-b.xml -> build/lib.linux-x86_64-3.9/openmm/app/data/charmm36 copying openmm/app/data/charmm36/tip5pew.xml -> build/lib.linux-x86_64-3.9/openmm/app/data/charmm36 copying openmm/app/data/charmm36/tip4pew.xml -> build/lib.linux-x86_64-3.9/openmm/app/data/charmm36 copying openmm/app/data/charmm36/spce.xml -> build/lib.linux-x86_64-3.9/openmm/app/data/charmm36 running build_ext building 'openmm._openmm' extension creating build/temp.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/src creating build/temp.linux-x86_64-3.9/src/swig_doxygen x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DMAJOR_VERSION=7 -DMINOR_VERSION=6 -I/<>/openmmapi/include -I/<>/olla/include -I/<>/serialization/include -I/<>/plugins/amoeba/openmmapi/include -I/<>/plugins/rpmd/openmmapi/include -I/<>/plugins/drude/openmmapi/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c src/swig_doxygen/OpenMMSwig.cxx -o build/temp.linux-x86_64-3.9/src/swig_doxygen/OpenMMSwig.o -std=c++11 src/swig_doxygen/OpenMMSwig.cxx:3126:65: warning: implicit conversion from 'long' to 'double' changes value from 9223372036854775807 to 9223372036854775808 [-Wimplicit-const-int-float-conversion] if (SWIG_IsOK(res) && SWIG_CanCastAsInteger(&d, LONG_MIN, LONG_MAX)) { ~~~~~~~~~~~~~~~~~~~~~ ^~~~~~~~ /usr/lib/llvm-13/lib/clang/13.0.0/include/limits.h:47:19: note: expanded from macro 'LONG_MAX' #define LONG_MAX __LONG_MAX__ ^~~~~~~~~~~~ :71:22: note: expanded from here #define __LONG_MAX__ 9223372036854775807L ^~~~~~~~~~~~~~~~~~~~ src/swig_doxygen/OpenMMSwig.cxx:3232:58: warning: implicit conversion from 'unsigned long' to 'double' changes value from 18446744073709551615 to 18446744073709551616 [-Wimplicit-const-int-float-conversion] if (SWIG_IsOK(res) && SWIG_CanCastAsInteger(&d, 0, ULONG_MAX)) { ~~~~~~~~~~~~~~~~~~~~~ ^~~~~~~~~ /usr/lib/llvm-13/lib/clang/13.0.0/include/limits.h:57:37: note: expanded from macro 'ULONG_MAX' #define ULONG_MAX (__LONG_MAX__ *2UL+1UL) ~~~~~~~~~~~~~~~~~^~~~ In file included from src/swig_doxygen/OpenMMSwig.cxx:6576: In file included from /<>/openmmapi/include/OpenMM.h:53: /<>/openmmapi/include/openmm/GayBerneForce.h:292:23: warning: field 'epsilon' will be initialized after field 'xparticle' [-Wreorder-ctor] sigma(sigma), epsilon(epsilon), xparticle(xparticle), yparticle(yparticle), sx(sx), sy(sy), sz(sz), ex(ex), ey(ey), ez(ez) { ~~~~~~~~~~~~ ^~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~ xparticle(xparticle) yparticle(yparticle) sigma(sigma)epsilon(epsilon) In file included from src/swig_doxygen/OpenMMSwig.cxx:6576: In file included from /<>/openmmapi/include/OpenMM.h:64: /<>/openmmapi/include/openmm/NonbondedForce.h:693:9: warning: field 'parameter' will be initialized after field 'particle' [-Wreorder-ctor] parameter(parameter), particle(particle), chargeScale(chargeScale), sigmaScale(sigmaScale), epsilonScale(epsilonScale) { ^~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~ particle(particle) parameter(parameter) /<>/openmmapi/include/openmm/NonbondedForce.h:710:9: warning: field 'parameter' will be initialized after field 'exception' [-Wreorder-ctor] parameter(parameter), exception(exception), chargeProdScale(chargeProdScale), sigmaScale(sigmaScale), epsilonScale(epsilonScale) { ^~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~ exception(exception) parameter(parameter) In file included from src/swig_doxygen/OpenMMSwig.cxx:6577: In file included from /<>/plugins/amoeba/openmmapi/include/OpenMMAmoeba.h:38: /<>/plugins/amoeba/openmmapi/include/openmm/AmoebaVdwForce.h:502:83: warning: field 'epsilon' will be initialized after field 'typeIndex' [-Wreorder-ctor] parentIndex(parentIndex), reductionFactor(reductionFactor), sigma(sigma), epsilon(epsilon), typeIndex(typeIndex), isAlchemical(isAlchemical) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~ ^~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~ typeIndex(typeIndex) reductionFactor(reductionFactor) sigma(sigma) epsilon(epsilon) In file included from src/swig_doxygen/OpenMMSwig.cxx:6577: In file included from /<>/plugins/amoeba/openmmapi/include/OpenMMAmoeba.h:40: /<>/plugins/amoeba/openmmapi/include/openmm/HippoNonbondedForce.h:417:41: warning: initializer order does not match the declaration order [-Wreorder-ctor] charge(charge), dipole(dipole), quadrupole(quadrupole), coreCharge(coreCharge), alpha(alpha), epsilon(epsilon), ~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~ ^~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~ axisType(axisType) multipoleAtomZ(multipoleAtomZ) multipoleAtomX(multipoleAtomX) multipoleAtomY(multipoleAtomY) charge(charge) coreCharge(coreCharge) /<>/plugins/amoeba/openmmapi/include/openmm/HippoNonbondedForce.h:417:41: note: field 'quadrupole' will be initialized after field 'coreCharge' charge(charge), dipole(dipole), quadrupole(quadrupole), coreCharge(coreCharge), alpha(alpha), epsilon(epsilon), ^~~~~~~~~~~~~~~~~~~~~~ /<>/plugins/amoeba/openmmapi/include/openmm/HippoNonbondedForce.h:418:91: note: field 'polarizability' will be initialized after field 'axisType' damping(damping), c6(c6), pauliK(pauliK), pauliQ(pauliQ), pauliAlpha(pauliAlpha), polarizability(polarizability), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/swig_doxygen/OpenMMSwig.cxx:6590: In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " \ ^ In file included from src/swig_doxygen/OpenMMSwig.cxx:6576: In file included from /<>/openmmapi/include/OpenMM.h:36: In file included from /<>/openmmapi/include/openmm/BrownianIntegrator.h:35: In file included from /<>/openmmapi/include/openmm/Integrator.h:35: In file included from /<>/openmmapi/include/openmm/State.h:35: /<>/openmmapi/include/openmm/Vec3.h:160:13: warning: unused function 'operator*' [-Wunused-function] static Vec3 operator*(double lhs, Vec3 rhs) { ^ 9 warnings generated. x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,--as-needed -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/src/swig_doxygen/OpenMMSwig.o -L/<>/obj-x86_64-linux-gnu -Wl,--enable-new-dtags,-R/<>/obj-x86_64-linux-gnu -lOpenMM -lOpenMMAmoeba -lOpenMMRPMD -lOpenMMDrude -o build/lib.linux-x86_64-3.9/openmm/_openmm.cpython-39-x86_64-linux-gnu.so building 'openmm.app.internal.compiled' extension creating build/temp.linux-x86_64-3.9/openmm creating build/temp.linux-x86_64-3.9/openmm/app creating build/temp.linux-x86_64-3.9/openmm/app/internal x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c openmm/app/internal/compiled.cpp -o build/temp.linux-x86_64-3.9/openmm/app/internal/compiled.o x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,--as-needed -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/openmm/app/internal/compiled.o -o build/lib.linux-x86_64-3.9/openmm/app/internal/compiled.cpython-39-x86_64-linux-gnu.so make[1]: Leaving directory '/<>' debian/rules override_dh_auto_test make[1]: Entering directory '/<>' dh_auto_test cd obj-x86_64-linux-gnu && make -j4 test ARGS\+=--verbose ARGS\+=-j4 make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j4 UpdateCTestConfiguration from :/<>/obj-x86_64-linux-gnu/DartConfiguration.tcl Parse Config file:/<>/obj-x86_64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/<>/obj-x86_64-linux-gnu/DartConfiguration.tcl Parse Config file:/<>/obj-x86_64-linux-gnu/DartConfiguration.tcl Test project /<>/obj-x86_64-linux-gnu Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: TestReferenceAndersenThermostat 1: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceAndersenThermostat 1: Test timeout computed to be: 1500 test 2 Start 2: TestReferenceBrownianIntegrator 2: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceBrownianIntegrator 2: Test timeout computed to be: 1500 test 3 Start 3: TestReferenceCMAPTorsionForce 3: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceCMAPTorsionForce 3: Test timeout computed to be: 1500 test 4 Start 4: TestReferenceCMMotionRemover 4: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceCMMotionRemover 4: Test timeout computed to be: 1500 4: Done 1/113 Test #4: TestReferenceCMMotionRemover .................. Passed 0.01 sec test 5 Start 5: TestReferenceCheckpoints 5: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceCheckpoints 5: Test timeout computed to be: 1500 3: Done 2/113 Test #3: TestReferenceCMAPTorsionForce ................. Passed 0.02 sec test 6 Start 6: TestReferenceCompoundIntegrator 6: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceCompoundIntegrator 6: Test timeout computed to be: 1500 6: Done 3/113 Test #6: TestReferenceCompoundIntegrator ............... Passed 0.02 sec test 7 Start 7: TestReferenceCustomAngleForce 7: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceCustomAngleForce 7: Test timeout computed to be: 1500 7: Done 4/113 Test #7: TestReferenceCustomAngleForce ................. Passed 0.01 sec test 8 Start 8: TestReferenceCustomBondForce 8: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceCustomBondForce 8: Test timeout computed to be: 1500 8: Done 5/113 Test #8: TestReferenceCustomBondForce .................. Passed 0.01 sec test 9 Start 9: TestReferenceCustomCVForce 9: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceCustomCVForce 9: Test timeout computed to be: 1500 9: Done 6/113 Test #9: TestReferenceCustomCVForce .................... Passed 0.01 sec test 10 Start 10: TestReferenceCustomCentroidBondForce 10: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceCustomCentroidBondForce 10: Test timeout computed to be: 1500 10: Done 7/113 Test #10: TestReferenceCustomCentroidBondForce .......... Passed 0.06 sec test 11 Start 11: TestReferenceCustomCompoundBondForce 11: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceCustomCompoundBondForce 11: Test timeout computed to be: 1500 2: Done 8/113 Test #2: TestReferenceBrownianIntegrator ............... Passed 0.16 sec test 12 Start 12: TestReferenceCustomExternalForce 12: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceCustomExternalForce 12: Test timeout computed to be: 1500 12: Done 9/113 Test #12: TestReferenceCustomExternalForce .............. Passed 0.01 sec test 13 Start 13: TestReferenceCustomGBForce 13: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceCustomGBForce 13: Test timeout computed to be: 1500 5: Done 10/113 Test #5: TestReferenceCheckpoints ...................... Passed 0.19 sec test 14 Start 14: TestReferenceCustomHbondForce 14: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceCustomHbondForce 14: Test timeout computed to be: 1500 14: Done 11/113 Test #14: TestReferenceCustomHbondForce ................. Passed 0.01 sec test 15 Start 15: TestReferenceCustomIntegrator 15: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceCustomIntegrator 15: Test timeout computed to be: 1500 11: Done 12/113 Test #11: TestReferenceCustomCompoundBondForce .......... Passed 0.11 sec test 16 Start 16: TestReferenceCustomManyParticleForce 16: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceCustomManyParticleForce 16: Test timeout computed to be: 1500 1: Done 13/113 Test #1: TestReferenceAndersenThermostat ............... Passed 0.27 sec test 17 Start 17: TestReferenceCustomNonbondedForce 17: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceCustomNonbondedForce 17: Test timeout computed to be: 1500 13: Done 14/113 Test #13: TestReferenceCustomGBForce .................... Passed 0.25 sec test 18 Start 18: TestReferenceCustomTorsionForce 18: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceCustomTorsionForce 18: Test timeout computed to be: 1500 18: Done 15/113 Test #18: TestReferenceCustomTorsionForce ............... Passed 0.01 sec test 19 Start 19: TestReferenceDispersionPME 19: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceDispersionPME 19: Test timeout computed to be: 1500 15: Done 16/113 Test #15: TestReferenceCustomIntegrator ................. Passed 1.58 sec test 20 Start 20: TestReferenceEwald 20: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceEwald 20: Test timeout computed to be: 1500 20: Done 17/113 Test #20: TestReferenceEwald ............................ Passed 2.11 sec test 21 Start 21: TestReferenceGBSAOBCForce 21: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceGBSAOBCForce 21: Test timeout computed to be: 1500 19: Done 18/113 Test #19: TestReferenceDispersionPME .................... Passed 4.01 sec test 22 Start 22: TestReferenceGayBerneForce 22: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceGayBerneForce 22: Test timeout computed to be: 1500 22: Done 19/113 Test #22: TestReferenceGayBerneForce .................... Passed 0.04 sec test 23 Start 23: TestReferenceHarmonicAngleForce 23: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceHarmonicAngleForce 23: Test timeout computed to be: 1500 23: Done 20/113 Test #23: TestReferenceHarmonicAngleForce ............... Passed 0.00 sec test 24 Start 24: TestReferenceHarmonicBondForce 24: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceHarmonicBondForce 24: Test timeout computed to be: 1500 24: Done 21/113 Test #24: TestReferenceHarmonicBondForce ................ Passed 0.00 sec test 25 Start 25: TestReferenceKineticEnergy 25: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceKineticEnergy 25: Test timeout computed to be: 1500 25: Done 22/113 Test #25: TestReferenceKineticEnergy .................... Passed 0.00 sec test 26 Start 26: TestReferenceLangevinIntegrator 26: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceLangevinIntegrator 26: Test timeout computed to be: 1500 26: Done 23/113 Test #26: TestReferenceLangevinIntegrator ............... Passed 0.10 sec test 27 Start 27: TestReferenceLangevinMiddleIntegrator 27: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceLangevinMiddleIntegrator 27: Test timeout computed to be: 1500 21: Done 24/113 Test #21: TestReferenceGBSAOBCForce ..................... Passed 1.93 sec test 28 Start 28: TestReferenceLocalEnergyMinimizer 28: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceLocalEnergyMinimizer 28: Test timeout computed to be: 1500 27: Done 25/113 Test #27: TestReferenceLangevinMiddleIntegrator ......... Passed 1.50 sec test 29 Start 29: TestReferenceMonteCarloAnisotropicBarostat 29: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceMonteCarloAnisotropicBarostat 29: Test timeout computed to be: 1500 28: Done 26/113 Test #28: TestReferenceLocalEnergyMinimizer ............. Passed 2.44 sec test 30 Start 30: TestReferenceMonteCarloBarostat 30: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceMonteCarloBarostat 30: Test timeout computed to be: 1500 29: Done 27/113 Test #29: TestReferenceMonteCarloAnisotropicBarostat .... Passed 2.34 sec test 31 Start 31: TestReferenceMonteCarloMembraneBarostat 31: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceMonteCarloMembraneBarostat 31: Test timeout computed to be: 1500 30: Done 28/113 Test #30: TestReferenceMonteCarloBarostat ............... Passed 0.55 sec test 32 Start 32: TestReferenceNeighborList 32: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceNeighborList 32: Test timeout computed to be: 1500 32: Done 29/113 Test #32: TestReferenceNeighborList ..................... Passed 0.05 sec test 33 Start 33: TestReferenceNonbondedForce 33: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceNonbondedForce 33: Test timeout computed to be: 1500 33: Done 30/113 Test #33: TestReferenceNonbondedForce ................... Passed 0.69 sec test 34 Start 34: TestReferenceNoseHooverIntegrator 34: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceNoseHooverIntegrator 34: Test timeout computed to be: 1500 31: Done 31/113 Test #31: TestReferenceMonteCarloMembraneBarostat ....... Passed 1.57 sec test 35 Start 35: TestReferencePeriodicTorsionForce 35: Test command: /<>/obj-x86_64-linux-gnu/TestReferencePeriodicTorsionForce 35: Test timeout computed to be: 1500 35: Done 32/113 Test #35: TestReferencePeriodicTorsionForce ............. Passed 0.00 sec test 36 Start 36: TestReferenceRBTorsionForce 36: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceRBTorsionForce 36: Test timeout computed to be: 1500 36: Done 33/113 Test #36: TestReferenceRBTorsionForce ................... Passed 0.00 sec test 37 Start 37: TestReferenceRMSDForce 37: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceRMSDForce 37: Test timeout computed to be: 1500 37: Done 34/113 Test #37: TestReferenceRMSDForce ........................ Passed 0.00 sec test 38 Start 38: TestReferenceRandom 38: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceRandom 38: Test timeout computed to be: 1500 38: Done 35/113 Test #38: TestReferenceRandom ........................... Passed 0.94 sec test 39 Start 39: TestReferenceSettle 39: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceSettle 39: Test timeout computed to be: 1500 39: Done 36/113 Test #39: TestReferenceSettle ........................... Passed 0.05 sec test 40 Start 40: TestReferenceVariableLangevinIntegrator 40: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceVariableLangevinIntegrator 40: Test timeout computed to be: 1500 34: Done 37/113 Test #34: TestReferenceNoseHooverIntegrator ............. Passed 6.06 sec test 41 Start 41: TestReferenceVariableVerletIntegrator 41: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceVariableVerletIntegrator 41: Test timeout computed to be: 1500 41: Done 38/113 Test #41: TestReferenceVariableVerletIntegrator ......... Passed 5.90 sec test 42 Start 42: TestReferenceVerletIntegrator 42: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceVerletIntegrator 42: Test timeout computed to be: 1500 42: Done 39/113 Test #42: TestReferenceVerletIntegrator ................. Passed 0.84 sec test 43 Start 43: TestReferenceVirtualSites 43: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceVirtualSites 43: Test timeout computed to be: 1500 43: Done 40/113 Test #43: TestReferenceVirtualSites ..................... Passed 0.04 sec test 44 Start 44: TestCpuCheckpoints 44: Test command: /<>/obj-x86_64-linux-gnu/TestCpuCheckpoints "single" 44: Test timeout computed to be: 1500 44: Done 41/113 Test #44: TestCpuCheckpoints ............................ Passed 0.04 sec test 45 Start 45: TestCpuCompoundIntegrator 45: Test command: /<>/obj-x86_64-linux-gnu/TestCpuCompoundIntegrator "single" 45: Test timeout computed to be: 1500 45: Done 42/113 Test #45: TestCpuCompoundIntegrator ..................... Passed 2.88 sec test 46 Start 46: TestCpuCustomGBForce 46: Test command: /<>/obj-x86_64-linux-gnu/TestCpuCustomGBForce "single" 46: Test timeout computed to be: 1500 46: Done 43/113 Test #46: TestCpuCustomGBForce .......................... Passed 0.24 sec test 47 Start 47: TestCpuCustomManyParticleForce 47: Test command: /<>/obj-x86_64-linux-gnu/TestCpuCustomManyParticleForce "single" 47: Test timeout computed to be: 1500 16: Done 44/113 Test #16: TestReferenceCustomManyParticleForce .......... Passed 37.80 sec test 48 Start 48: TestCpuCustomNonbondedForce 48: Test command: /<>/obj-x86_64-linux-gnu/TestCpuCustomNonbondedForce "single" 48: Test timeout computed to be: 1500 48: Done 45/113 Test #48: TestCpuCustomNonbondedForce ................... Passed 1.30 sec test 49 Start 49: TestCpuDispersionPME 49: Test command: /<>/obj-x86_64-linux-gnu/TestCpuDispersionPME "single" 49: Test timeout computed to be: 1500 40: Done 46/113 Test #40: TestReferenceVariableLangevinIntegrator ....... Passed 28.81 sec test 50 Start 50: TestCpuEwald 50: Test command: /<>/obj-x86_64-linux-gnu/TestCpuEwald "single" 50: Test timeout computed to be: 1500 50: Done 47/113 Test #50: TestCpuEwald .................................. Passed 1.88 sec test 51 Start 51: TestCpuGBSAOBCForce 51: Test command: /<>/obj-x86_64-linux-gnu/TestCpuGBSAOBCForce "single" 51: Test timeout computed to be: 1500 51: Done 48/113 Test #51: TestCpuGBSAOBCForce ........................... Passed 1.05 sec test 52 Start 52: TestCpuGayBerneForce 52: Test command: /<>/obj-x86_64-linux-gnu/TestCpuGayBerneForce "single" 52: Test timeout computed to be: 1500 52: Done 49/113 Test #52: TestCpuGayBerneForce .......................... Passed 0.15 sec test 53 Start 53: TestCpuHarmonicAngleForce 53: Test command: /<>/obj-x86_64-linux-gnu/TestCpuHarmonicAngleForce "single" 53: Test timeout computed to be: 1500 53: Done 50/113 Test #53: TestCpuHarmonicAngleForce ..................... Passed 0.01 sec test 54 Start 54: TestCpuLangevinIntegrator 54: Test command: /<>/obj-x86_64-linux-gnu/TestCpuLangevinIntegrator "single" 54: Test timeout computed to be: 1500 49: Done 51/113 Test #49: TestCpuDispersionPME .......................... Passed 3.79 sec test 55 Start 55: TestCpuLangevinMiddleIntegrator 55: Test command: /<>/obj-x86_64-linux-gnu/TestCpuLangevinMiddleIntegrator "single" 55: Test timeout computed to be: 1500 47: Done 52/113 Test #47: TestCpuCustomManyParticleForce ................ Passed 22.26 sec test 56 Start 56: TestCpuNeighborList 56: Test command: /<>/obj-x86_64-linux-gnu/TestCpuNeighborList "single" 56: Test timeout computed to be: 1500 56: Done 53/113 Test #56: TestCpuNeighborList ........................... Passed 0.14 sec test 57 Start 57: TestCpuNonbondedForce 57: Test command: /<>/obj-x86_64-linux-gnu/TestCpuNonbondedForce "single" 57: Test timeout computed to be: 1500 57: Done 54/113 Test #57: TestCpuNonbondedForce ......................... Passed 0.89 sec test 58 Start 58: TestCpuPeriodicTorsionForce 58: Test command: /<>/obj-x86_64-linux-gnu/TestCpuPeriodicTorsionForce "single" 58: Test timeout computed to be: 1500 58: Done 55/113 Test #58: TestCpuPeriodicTorsionForce ................... Passed 0.01 sec test 59 Start 59: TestCpuRBTorsionForce 59: Test command: /<>/obj-x86_64-linux-gnu/TestCpuRBTorsionForce "single" 59: Test timeout computed to be: 1500 59: Done 56/113 Test #59: TestCpuRBTorsionForce ......................... Passed 0.04 sec test 60 Start 60: TestCpuSettle 60: Test command: /<>/obj-x86_64-linux-gnu/TestCpuSettle "single" 60: Test timeout computed to be: 1500 55: Done 57/113 Test #55: TestCpuLangevinMiddleIntegrator ............... Passed 6.03 sec test 61 Start 61: TestReferenceAmoebaExtrapolatedPolarization 61: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceAmoebaExtrapolatedPolarization 61: Test timeout computed to be: 1500 60: Done 58/113 Test #60: TestCpuSettle ................................. Passed 0.57 sec test 62 Start 62: TestReferenceAmoebaGeneralizedKirkwoodForce 62: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceAmoebaGeneralizedKirkwoodForce 62: Test timeout computed to be: 1500 54: Done 59/113 Test #54: TestCpuLangevinIntegrator ..................... Passed 6.90 sec test 63 Start 63: TestReferenceAmoebaMultipoleForce 63: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceAmoebaMultipoleForce 63: Test timeout computed to be: 1500 61: Done 60/113 Test #61: TestReferenceAmoebaExtrapolatedPolarization ... Passed 1.39 sec test 64 Start 64: TestReferenceAmoebaTorsionTorsionForce 64: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceAmoebaTorsionTorsionForce 64: Test timeout computed to be: 1500 64: Done 61/113 Test #64: TestReferenceAmoebaTorsionTorsionForce ........ Passed 0.01 sec test 65 Start 65: TestReferenceAmoebaVdwForce 65: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceAmoebaVdwForce 65: Test timeout computed to be: 1500 65: Done 62/113 Test #65: TestReferenceAmoebaVdwForce ................... Passed 0.14 sec test 66 Start 66: TestReferenceHippoNonbondedForce 66: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceHippoNonbondedForce 66: Test timeout computed to be: 1500 66: Done 63/113 Test #66: TestReferenceHippoNonbondedForce .............. Passed 0.62 sec test 67 Start 67: TestReferenceWcaDispersionForce 67: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceWcaDispersionForce 67: Test timeout computed to be: 1500 67: Done 64/113 Test #67: TestReferenceWcaDispersionForce ............... Passed 0.00 sec test 68 Start 68: TestReferenceRpmd 68: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceRpmd 68: Test timeout computed to be: 1500 63: Done 65/113 Test #63: TestReferenceAmoebaMultipoleForce ............. Passed 1.59 sec test 69 Start 69: TestReferenceDrudeForce 69: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceDrudeForce 69: Test timeout computed to be: 1500 69: Done 66/113 Test #69: TestReferenceDrudeForce ....................... Passed 0.01 sec test 70 Start 70: TestReferenceDrudeLangevinIntegrator 70: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceDrudeLangevinIntegrator 70: Test timeout computed to be: 1500 17: Done 67/113 Test #17: TestReferenceCustomNonbondedForce ............. Passed 53.96 sec test 71 Start 71: TestReferenceDrudeNoseHoover 71: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceDrudeNoseHoover 71: Test timeout computed to be: 1500 62: Done 68/113 Test #62: TestReferenceAmoebaGeneralizedKirkwoodForce ... Passed 8.03 sec test 72 Start 72: TestReferenceDrudeSCFIntegrator 72: Test command: /<>/obj-x86_64-linux-gnu/TestReferenceDrudeSCFIntegrator 72: Test timeout computed to be: 1500 71: Done 69/113 Test #71: TestReferenceDrudeNoseHoover .................. Passed 7.34 sec test 73 Start 73: TestSerializationNode 73: Test command: /<>/obj-x86_64-linux-gnu/TestSerializationNode 73: Test timeout computed to be: 1500 73: Done 70/113 Test #73: TestSerializationNode ......................... Passed 0.00 sec test 74 Start 74: TestSerializeAndersenThermostat 74: Test command: /<>/obj-x86_64-linux-gnu/TestSerializeAndersenThermostat 74: Test timeout computed to be: 1500 74: Done 71/113 Test #74: TestSerializeAndersenThermostat ............... Passed 0.00 sec test 75 Start 75: TestSerializeCMAPTorsion 75: Test command: /<>/obj-x86_64-linux-gnu/TestSerializeCMAPTorsion 75: Test timeout computed to be: 1500 75: Done 72/113 Test #75: TestSerializeCMAPTorsion ...................... Passed 0.00 sec test 76 Start 76: TestSerializeCMMotionRemover 76: Test command: /<>/obj-x86_64-linux-gnu/TestSerializeCMMotionRemover 76: Test timeout computed to be: 1500 76: Done 73/113 Test #76: TestSerializeCMMotionRemover .................. Passed 0.00 sec test 77 Start 77: TestSerializeCustomAngleForce 77: Test command: /<>/obj-x86_64-linux-gnu/TestSerializeCustomAngleForce 77: Test timeout computed to be: 1500 77: Done 74/113 Test #77: TestSerializeCustomAngleForce ................. Passed 0.00 sec test 78 Start 78: TestSerializeCustomBondForce 78: Test command: /<>/obj-x86_64-linux-gnu/TestSerializeCustomBondForce 78: Test timeout computed to be: 1500 78: Done 75/113 Test #78: TestSerializeCustomBondForce .................. Passed 0.00 sec test 79 Start 79: TestSerializeCustomCVForce 79: Test command: /<>/obj-x86_64-linux-gnu/TestSerializeCustomCVForce 79: Test timeout computed to be: 1500 79: Done 76/113 Test #79: TestSerializeCustomCVForce .................... Passed 0.00 sec test 80 Start 80: TestSerializeCustomCentroidBondForce 80: Test command: /<>/obj-x86_64-linux-gnu/TestSerializeCustomCentroidBondForce 80: Test timeout computed to be: 1500 80: Done 77/113 Test #80: TestSerializeCustomCentroidBondForce .......... Passed 0.00 sec test 81 Start 81: TestSerializeCustomCompoundBondForce 81: Test command: /<>/obj-x86_64-linux-gnu/TestSerializeCustomCompoundBondForce 81: Test timeout computed to be: 1500 81: Done 78/113 Test #81: TestSerializeCustomCompoundBondForce .......... Passed 0.00 sec test 82 Start 82: TestSerializeCustomExternalForce 82: Test command: /<>/obj-x86_64-linux-gnu/TestSerializeCustomExternalForce 82: Test timeout computed to be: 1500 82: Done 79/113 Test #82: TestSerializeCustomExternalForce .............. Passed 0.00 sec test 83 Start 83: TestSerializeCustomGBForce 83: Test command: /<>/obj-x86_64-linux-gnu/TestSerializeCustomGBForce 83: Test timeout computed to be: 1500 83: Done 80/113 Test #83: TestSerializeCustomGBForce .................... Passed 0.00 sec test 84 Start 84: TestSerializeCustomHbondForce 84: Test command: /<>/obj-x86_64-linux-gnu/TestSerializeCustomHbondForce 84: Test timeout computed to be: 1500 84: Done 81/113 Test #84: TestSerializeCustomHbondForce ................. Passed 0.00 sec test 85 Start 85: TestSerializeCustomManyParticleForce 85: Test command: /<>/obj-x86_64-linux-gnu/TestSerializeCustomManyParticleForce 85: Test timeout computed to be: 1500 85: Done 82/113 Test #85: TestSerializeCustomManyParticleForce .......... Passed 0.00 sec test 86 Start 86: TestSerializeCustomNonbondedForce 86: Test command: /<>/obj-x86_64-linux-gnu/TestSerializeCustomNonbondedForce 86: Test timeout computed to be: 1500 86: Done 83/113 Test #86: TestSerializeCustomNonbondedForce ............. Passed 0.00 sec test 87 Start 87: TestSerializeCustomTorsionForce 87: Test command: /<>/obj-x86_64-linux-gnu/TestSerializeCustomTorsionForce 87: Test timeout computed to be: 1500 87: Done 84/113 Test #87: TestSerializeCustomTorsionForce ............... Passed 0.00 sec test 88 Start 88: TestSerializeGBSAOBCForce 88: Test command: /<>/obj-x86_64-linux-gnu/TestSerializeGBSAOBCForce 88: Test timeout computed to be: 1500 88: Done 85/113 Test #88: TestSerializeGBSAOBCForce ..................... Passed 0.00 sec test 89 Start 89: TestSerializeGayBerneForce 89: Test command: /<>/obj-x86_64-linux-gnu/TestSerializeGayBerneForce 89: Test timeout computed to be: 1500 89: Done 86/113 Test #89: TestSerializeGayBerneForce .................... Passed 0.00 sec test 90 Start 90: TestSerializeHarmonicAngleForce 90: Test command: /<>/obj-x86_64-linux-gnu/TestSerializeHarmonicAngleForce 90: Test timeout computed to be: 1500 90: Done 87/113 Test #90: TestSerializeHarmonicAngleForce ............... Passed 0.00 sec test 91 Start 91: TestSerializeHarmonicBondForce 91: Test command: /<>/obj-x86_64-linux-gnu/TestSerializeHarmonicBondForce 91: Test timeout computed to be: 1500 91: Done 88/113 Test #91: TestSerializeHarmonicBondForce ................ Passed 0.00 sec test 92 Start 92: TestSerializeIntegrator 92: Test command: /<>/obj-x86_64-linux-gnu/TestSerializeIntegrator 92: Test timeout computed to be: 1500 92: Done 89/113 Test #92: TestSerializeIntegrator ....................... Passed 0.01 sec test 93 Start 93: TestSerializeMonteCarloAnisotropicBarostat 93: Test command: /<>/obj-x86_64-linux-gnu/TestSerializeMonteCarloAnisotropicBarostat 93: Test timeout computed to be: 1500 93: Done 90/113 Test #93: TestSerializeMonteCarloAnisotropicBarostat .... Passed 0.00 sec test 94 Start 94: TestSerializeMonteCarloBarostat 94: Test command: /<>/obj-x86_64-linux-gnu/TestSerializeMonteCarloBarostat 94: Test timeout computed to be: 1500 94: Done 91/113 Test #94: TestSerializeMonteCarloBarostat ............... Passed 0.00 sec test 95 Start 95: TestSerializeMonteCarloMembraneBarostat 95: Test command: /<>/obj-x86_64-linux-gnu/TestSerializeMonteCarloMembraneBarostat 95: Test timeout computed to be: 1500 95: Done 92/113 Test #95: TestSerializeMonteCarloMembraneBarostat ....... Passed 0.00 sec test 96 Start 96: TestSerializeNonbondedForce 96: Test command: /<>/obj-x86_64-linux-gnu/TestSerializeNonbondedForce 96: Test timeout computed to be: 1500 96: Done 93/113 Test #96: TestSerializeNonbondedForce ................... Passed 0.00 sec test 97 Start 97: TestSerializeNoseHooverIntegrator 97: Test command: /<>/obj-x86_64-linux-gnu/TestSerializeNoseHooverIntegrator 97: Test timeout computed to be: 1500 94/113 Test #97: TestSerializeNoseHooverIntegrator .............***Exception: SegFault 0.03 sec test 98 Start 98: TestSerializePeriodicTorsionForce 98: Test command: /<>/obj-x86_64-linux-gnu/TestSerializePeriodicTorsionForce 98: Test timeout computed to be: 1500 98: Done 95/113 Test #98: TestSerializePeriodicTorsionForce ............. Passed 0.00 sec test 99 Start 99: TestSerializeRBTorsionForce 99: Test command: /<>/obj-x86_64-linux-gnu/TestSerializeRBTorsionForce 99: Test timeout computed to be: 1500 99: Done 96/113 Test #99: TestSerializeRBTorsionForce ................... Passed 0.00 sec test 100 Start 100: TestSerializeRMSDForce 100: Test command: /<>/obj-x86_64-linux-gnu/TestSerializeRMSDForce 100: Test timeout computed to be: 1500 100: Done 97/113 Test #100: TestSerializeRMSDForce ........................ Passed 0.00 sec test 101 Start 101: TestSerializeState 101: Test command: /<>/obj-x86_64-linux-gnu/TestSerializeState 101: Test timeout computed to be: 1500 98/113 Test #101: TestSerializeState ............................***Exception: SegFault 0.03 sec test 102 Start 102: TestSerializeSystem 102: Test command: /<>/obj-x86_64-linux-gnu/TestSerializeSystem 102: Test timeout computed to be: 1500 102: Done 99/113 Test #102: TestSerializeSystem ........................... Passed 0.00 sec test 103 Start 103: TestSerializeTabulatedFunctions 103: Test command: /<>/obj-x86_64-linux-gnu/TestSerializeTabulatedFunctions 103: Test timeout computed to be: 1500 103: Done 100/113 Test #103: TestSerializeTabulatedFunctions ............... Passed 0.01 sec test 104 Start 104: TestEnforcePeriodicBox 104: Test command: /<>/obj-x86_64-linux-gnu/TestEnforcePeriodicBox 104: Test timeout computed to be: 1500 104: Done 101/113 Test #104: TestEnforcePeriodicBox ........................ Passed 0.01 sec test 105 Start 105: TestFindExclusions 105: Test command: /<>/obj-x86_64-linux-gnu/TestFindExclusions 105: Test timeout computed to be: 1500 105: Done 102/113 Test #105: TestFindExclusions ............................ Passed 0.00 sec test 106 Start 106: TestFindMolecules 106: Test command: /<>/obj-x86_64-linux-gnu/TestFindMolecules 106: Test timeout computed to be: 1500 106: Done 103/113 Test #106: TestFindMolecules ............................. Passed 0.01 sec test 107 Start 107: TestParser 107: Test command: /<>/obj-x86_64-linux-gnu/TestParser 107: Test timeout computed to be: 1500 107: square(x) 107: cube(x) 107: cube(x) 107: 6*(x) 107: recip(1+(x)) 107: sqrt(x) 107: 1 107: Done 104/113 Test #107: TestParser .................................... Passed 0.02 sec test 108 Start 108: TestSplineFitter 108: Test command: /<>/obj-x86_64-linux-gnu/TestSplineFitter 108: Test timeout computed to be: 1500 108: Done 105/113 Test #108: TestSplineFitter .............................. Passed 0.01 sec test 109 Start 109: TestSystem 109: Test command: /<>/obj-x86_64-linux-gnu/TestSystem 109: Test timeout computed to be: 1500 109: Done 106/113 Test #109: TestSystem .................................... Passed 0.00 sec test 110 Start 110: TestVectorExpression 110: Test command: /<>/obj-x86_64-linux-gnu/TestVectorExpression 110: Test timeout computed to be: 1500 110: Done 107/113 Test #110: TestVectorExpression .......................... Passed 0.00 sec test 111 Start 111: TestVectorize 111: Test command: /<>/obj-x86_64-linux-gnu/TestVectorize 111: Test timeout computed to be: 1500 111: Done 108/113 Test #111: TestVectorize ................................. Passed 0.00 sec test 112 Start 112: TestVectorizeAvx 112: Test command: /<>/obj-x86_64-linux-gnu/TestVectorizeAvx 112: Test timeout computed to be: 1500 112: Done 109/113 Test #112: TestVectorizeAvx .............................. Passed 0.00 sec test 113 Start 113: TestVectorizeAvx2 113: Test command: /<>/obj-x86_64-linux-gnu/TestVectorizeAvx2 113: Test timeout computed to be: 1500 113: Done 110/113 Test #113: TestVectorizeAvx2 ............................. Passed 0.00 sec 70: Done 111/113 Test #70: TestReferenceDrudeLangevinIntegrator .......... Passed 15.02 sec 72: Done 112/113 Test #72: TestReferenceDrudeSCFIntegrator ............... Passed 13.26 sec 68: Done 113/113 Test #68: TestReferenceRpmd ............................. Passed 28.43 sec 98% tests passed, 2 tests failed out of 113 Total Test time (real) = 79.74 sec The following tests FAILED: 97 - TestSerializeNoseHooverIntegrator (SEGFAULT) 101 - TestSerializeState (SEGFAULT) Errors while running CTest make[2]: *** [Makefile:117: test] Error 8 make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' dh_auto_test: error: cd obj-x86_64-linux-gnu && make -j4 test ARGS\+=--verbose ARGS\+=-j4 returned exit code 2 make[1]: *** [debian/rules:36: override_dh_auto_test] Error 25 make[1]: Leaving directory '/<>' make: *** [debian/rules:25: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2021-10-26T20:30:56Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 548756 Build-Time: 293 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 27 Job: openmm_7.6.0+dfsg-1 Machine Architecture: amd64 Package: openmm Package-Time: 343 Source-Version: 7.6.0+dfsg-1 Space: 548756 Status: attempted Version: 7.6.0+dfsg-1 -------------------------------------------------------------------------------- Finished at 2021-10-26T20:30:56Z Build needed 00:05:43, 548756k disk space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 343.89932844s DC-Time-Estimation: 343.89932844 versus expected 1396 (r/m: 3.0593274966035877 ; m: 343.89932844)